Wall clock time and date at job start Tue Mar 31 2020 06:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99963 * 2 1 4 4 H 1.48498 * 109.47375 * 270.00761 * 3 2 1 5 5 H 1.48508 * 109.47196 * 30.00757 * 3 2 1 6 6 H 1.48504 * 109.47051 * 150.00381 * 3 2 1 7 7 C 1.37876 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99588 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 179.97438 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 O 1.45199 * 109.47075 * 179.97438 * 11 10 9 13 13 C 1.34230 * 116.99614 * 179.97438 * 12 11 10 14 14 O 1.20824 * 120.00179 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99717 * 179.97438 * 13 12 11 16 16 H 1.08995 * 109.29991 * 300.41819 * 15 13 12 17 17 C 1.52856 * 109.30085 * 181.03731 * 15 13 12 18 18 C 1.53436 * 108.84569 * 188.35185 * 17 15 13 19 19 N 1.46921 * 107.79051 * 63.19900 * 18 17 15 20 20 C 1.39916 * 118.92511 * 315.33306 * 19 18 17 21 21 C 1.39080 * 119.13509 * 193.30794 * 20 19 18 22 22 C 1.38020 * 120.03184 * 180.41911 * 21 20 19 23 23 C 1.38309 * 119.91271 * 359.94983 * 22 21 20 24 24 C 1.38133 * 120.15852 * 359.90681 * 23 22 21 25 25 C 1.38500 * 120.30625 * 0.06841 * 24 23 22 26 26 H 0.97008 * 120.00167 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 28 28 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 29 29 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 30 30 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 31 31 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 32 32 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 33 33 H 1.09000 * 109.57384 * 308.15804 * 17 15 13 34 34 H 1.08998 * 109.57344 * 68.54172 * 17 15 13 35 35 H 1.09006 * 109.79957 * 303.62594 * 18 17 15 36 36 H 1.08996 * 109.83650 * 182.79838 * 18 17 15 37 37 H 0.97000 * 120.53491 * 135.34388 * 19 18 17 38 38 H 1.07998 * 119.98336 * 0.36074 * 21 20 19 39 39 H 1.08003 * 120.04671 * 179.97438 * 22 21 20 40 40 H 1.08001 * 119.92203 * 179.97438 * 23 22 21 41 41 H 1.08004 * 119.84453 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6365 -0.0022 12 8 6.0355 -4.0055 -0.0015 13 6 7.3662 -4.1813 -0.0030 14 8 8.1022 -3.2231 -0.0043 15 6 7.9422 -5.5740 -0.0017 16 1 7.5997 -6.1047 0.8865 17 6 9.4682 -5.4895 0.0223 18 6 10.0458 -6.8954 -0.1875 19 7 9.6395 -7.3530 -1.5232 20 6 8.3160 -7.1562 -1.9323 21 6 7.8499 -7.8224 -3.0607 22 6 6.5502 -7.6352 -3.4858 23 6 5.7119 -6.7851 -2.7876 24 6 6.1717 -6.1247 -1.6649 25 6 7.4743 -6.3072 -1.2311 26 1 -0.4851 0.8401 0.0004 27 1 3.8752 -0.6804 0.8888 28 1 3.8744 -0.6801 -0.8912 29 1 3.6578 -3.1506 -0.8907 30 1 3.6585 -3.1501 0.8892 31 1 5.9156 -2.1223 0.8873 32 1 5.9141 -2.1230 -0.8927 33 1 9.8102 -4.8313 -0.7765 34 1 9.7972 -5.0995 0.9855 35 1 9.6524 -7.5731 0.5704 36 1 11.1334 -6.8618 -0.1238 37 1 10.2783 -7.7846 -2.1118 38 1 8.5056 -8.4858 -3.6051 39 1 6.1882 -8.1521 -4.3623 40 1 4.6950 -6.6382 -3.1204 41 1 5.5125 -5.4624 -1.1233 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850029909.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:50 Heat of formation + Delta-G solvation = -90.282483 kcal Electronic energy + Delta-G solvation = -22493.647767 eV Core-core repulsion = 19143.888343 eV Total energy + Delta-G solvation = -3349.759424 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.06839 -40.50296 -38.12443 -37.05476 -35.96155 -34.64198 -33.80770 -31.36613 -30.46063 -29.52623 -26.94499 -24.97137 -24.06524 -23.56740 -22.28553 -21.95294 -20.48371 -19.08301 -18.82261 -18.37290 -17.77824 -17.38282 -16.97728 -16.77387 -16.29727 -15.67468 -15.19814 -14.84735 -14.77559 -14.61606 -14.55279 -14.24948 -13.99988 -13.75938 -13.68063 -13.30703 -12.88629 -12.86398 -12.65109 -12.26781 -12.13095 -12.05098 -11.89782 -11.77396 -11.69542 -11.45424 -11.36713 -11.33948 -10.92659 -10.78464 -9.67909 -8.31350 -8.30999 -6.35949 0.41688 0.68175 1.10713 1.35961 1.37228 1.49045 1.61527 2.34790 2.57620 2.93535 3.04087 3.41078 3.61694 3.76325 3.97734 3.99607 4.02778 4.19636 4.25730 4.33767 4.36370 4.56095 4.58436 4.65031 4.68921 4.72441 4.78669 4.80058 4.94771 4.98716 5.17296 5.19186 5.31081 5.38393 5.47353 5.48983 5.59994 5.62002 5.78334 5.94218 6.25004 6.39337 6.63515 6.72098 6.93385 7.28534 8.85587 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024199 B = 0.003346 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.791578 B = 8365.339536 C = 9221.122259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.247 1.247 7 C -0.534 4.534 8 H 0.036 0.964 9 C -0.009 4.009 10 C -0.091 4.091 11 C 0.071 3.929 12 O -0.351 6.351 13 C 0.468 3.532 14 O -0.535 6.535 15 C -0.025 4.025 16 H 0.130 0.870 17 C -0.121 4.121 18 C 0.128 3.872 19 N -0.748 5.748 20 C 0.221 3.779 21 C -0.197 4.197 22 C -0.074 4.074 23 C -0.190 4.190 24 C -0.093 4.093 25 C -0.179 4.179 26 H 0.267 0.733 27 H 0.025 0.975 28 H 0.022 0.978 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.116 0.884 37 H 0.414 0.586 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.123 0.877 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.014 -18.268 -2.973 30.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.772 3.228 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.170 1.170 7 C -0.572 4.572 8 H 0.054 0.946 9 C -0.046 4.046 10 C -0.129 4.129 11 C -0.002 4.002 12 O -0.268 6.268 13 C 0.312 3.688 14 O -0.425 6.425 15 C -0.043 4.043 16 H 0.148 0.852 17 C -0.160 4.160 18 C 0.004 3.996 19 N -0.380 5.380 20 C 0.117 3.883 21 C -0.219 4.219 22 C -0.092 4.092 23 C -0.210 4.210 24 C -0.111 4.111 25 C -0.184 4.184 26 H 0.076 0.924 27 H 0.044 0.956 28 H 0.041 0.959 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.134 0.866 37 H 0.251 0.749 38 H 0.164 0.836 39 H 0.162 0.838 40 H 0.141 0.859 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 24.118 -17.785 -2.776 30.095 hybrid contribution -0.420 1.063 -0.220 1.164 sum 23.698 -16.722 -2.996 29.158 Atomic orbital electron populations 1.70058 1.08260 1.28259 1.52388 1.25991 0.95631 1.03477 0.94029 0.85676 0.79531 0.78293 0.79284 1.19128 1.20789 1.17013 1.21395 0.91649 0.93383 1.50723 0.94577 1.19443 0.94357 0.93737 0.97097 1.21313 0.90609 0.98370 1.02590 1.23197 0.95273 0.79403 1.02323 1.86529 1.24433 1.32738 1.83103 1.24152 0.80561 0.93067 0.71010 1.90626 1.60945 1.44143 1.46743 1.19923 0.97366 0.87520 0.99533 0.85244 1.21839 0.90669 0.99249 1.04224 1.21678 1.01373 0.92395 0.84143 1.44741 1.07484 1.67470 1.18299 1.17601 0.85406 0.92246 0.93025 1.20954 0.97376 1.04549 0.99065 1.21250 0.93135 0.95976 0.98884 1.21125 1.01077 1.01208 0.97590 1.21608 0.94931 0.98102 0.96463 1.18883 0.95393 1.03676 1.00426 0.92373 0.95641 0.95928 0.91895 0.91707 0.91050 0.91560 0.92008 0.88517 0.90849 0.86635 0.74892 0.83590 0.83812 0.85916 0.85231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16 2 C 0.01 0.34 5.47 84.65 0.46 0.80 16 3 Si 0.95 44.53 27.47 68.60 1.88 46.41 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.25 -10.75 6.54 99.48 0.65 -10.10 16 7 C -0.53 -31.03 9.66 25.60 0.25 -30.78 16 8 H 0.04 2.30 7.99 -2.91 -0.02 2.27 16 9 C -0.01 -0.42 4.04 29.84 0.12 -0.30 16 10 C -0.09 -3.62 5.53 30.59 0.17 -3.45 16 11 C 0.07 2.46 5.47 71.98 0.39 2.85 16 12 O -0.35 -11.18 7.26 -51.42 -0.37 -11.55 16 13 C 0.47 13.79 7.01 71.24 0.50 14.29 16 14 O -0.53 -18.30 15.58 21.97 0.34 -17.96 16 15 C -0.02 -0.54 2.77 -12.36 -0.03 -0.57 16 16 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 17 C -0.12 -2.04 4.80 30.69 0.15 -1.89 16 18 C 0.13 1.31 7.11 86.45 0.61 1.92 16 19 N -0.75 -9.57 5.80 -337.68 -1.96 -11.53 16 20 C 0.22 4.26 6.47 38.14 0.25 4.51 16 21 C -0.20 -3.43 9.88 22.42 0.22 -3.21 16 22 C -0.07 -1.41 10.05 22.23 0.22 -1.19 16 23 C -0.19 -4.53 10.04 22.26 0.22 -4.31 16 24 C -0.09 -2.47 9.04 22.31 0.20 -2.26 16 25 C -0.18 -4.21 5.47 -19.75 -0.11 -4.32 16 26 H 0.27 15.70 8.31 -92.70 -0.77 14.93 16 27 H 0.03 1.16 7.20 -2.39 -0.02 1.15 16 28 H 0.02 1.02 7.57 -2.39 -0.02 1.01 16 29 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.07 2.39 8.13 -2.39 -0.02 2.37 16 32 H 0.07 2.29 8.13 -2.39 -0.02 2.27 16 33 H 0.06 1.31 7.82 -2.39 -0.02 1.29 16 34 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.07 0.64 8.14 -2.38 -0.02 0.63 16 36 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.41 3.28 8.86 -92.71 -0.82 2.46 16 38 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 39 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 40 H 0.12 2.76 8.06 -2.91 -0.02 2.74 16 41 H 0.13 3.82 5.14 -2.91 -0.01 3.81 16 Total: -1.00 -72.00 335.79 3.98 -68.02 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.15 Total: 14.13 kcal Atomic # 6 Polarization: -31.53 SS G_CDS: 3.63 Total: -27.90 kcal Atomic # 7 Polarization: -69.50 SS G_CDS: -1.66 Total: -71.16 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -0.03 Total: -29.51 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.41 kcal Total: -72.00 3.98 -68.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850029909.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.258 kcal (2) G-P(sol) polarization free energy of solvation -72.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds