Wall clock time and date at job start Tue Mar 31 2020 06:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.46868 * 2 1 4 4 C 1.35548 * 116.99885 * 179.97438 * 3 2 1 5 5 C 1.38917 * 120.46336 * 180.25353 * 4 3 2 6 6 C 1.39272 * 118.28032 * 180.22048 * 5 4 3 7 7 N 1.38611 * 120.49839 * 179.80261 * 6 5 4 8 8 C 1.40557 * 119.99993 * 185.60235 * 7 6 5 9 9 C 1.40671 * 126.08045 * 353.94826 * 8 7 6 10 10 N 1.30917 * 108.39103 * 179.97438 * 9 8 7 11 11 N 1.40067 * 108.40758 * 0.02562 * 10 9 8 12 12 C 1.37310 * 126.06961 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99952 * 180.02562 * 12 11 10 14 14 C 1.38979 * 119.99958 * 0.02562 * 12 11 10 15 15 N 1.31299 * 120.00245 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99905 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47207 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.47061 * 119.99956 * 16 14 12 19 19 H 1.48499 * 109.47190 * 240.00147 * 16 14 12 20 20 C 1.35675 * 126.08218 * 174.26494 * 8 7 6 21 21 N 1.33186 * 119.00081 * 359.52912 * 6 5 4 22 22 C 1.31710 * 120.82990 * 0.24904 * 21 6 5 23 23 C 1.50699 * 119.05171 * 180.02562 * 22 21 6 24 24 N 1.31779 * 121.89711 * 359.97438 * 22 21 6 25 25 H 1.08997 * 109.47779 * 300.00534 * 1 2 3 26 26 H 1.09003 * 109.47279 * 60.00195 * 1 2 3 27 27 H 1.09004 * 109.47074 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47194 * 240.00205 * 2 1 3 29 29 H 1.08995 * 109.46878 * 119.99304 * 2 1 3 30 30 H 1.08006 * 120.85933 * 0.02562 * 5 4 3 31 31 H 0.96997 * 119.99454 * 5.60121 * 7 6 5 32 32 H 1.08001 * 125.80787 * 0.02887 * 9 8 7 33 33 H 0.96997 * 120.00266 * 179.97438 * 15 14 12 34 34 H 1.07995 * 126.24995 * 359.97438 * 20 8 7 35 35 H 1.09000 * 109.46966 * 89.99721 * 23 22 21 36 36 H 1.08997 * 109.46944 * 210.00688 * 23 22 21 37 37 H 1.09009 * 109.46776 * 330.00457 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3501 1.5250 0.0005 5 6 3.8914 2.8043 0.0059 6 6 5.2780 2.9341 0.0015 7 7 5.8671 4.1888 0.0024 8 6 7.2620 4.3104 -0.1209 9 6 8.1881 3.2516 -0.1324 10 7 9.3894 3.7550 -0.2637 11 7 9.2788 5.1492 -0.3404 12 6 10.3175 6.0360 -0.4822 13 1 10.1193 7.0966 -0.5305 14 6 11.6239 5.5688 -0.5637 15 7 11.8649 4.2794 -0.5044 16 14 13.0370 6.7753 -0.7559 17 1 12.5034 8.1605 -0.7948 18 1 13.9670 6.6356 0.3934 19 1 13.7641 6.4888 -2.0187 20 6 7.9552 5.4702 -0.2439 21 7 6.0295 1.8345 0.0020 22 6 5.4766 0.6391 0.0016 23 6 6.3651 -0.5781 0.0028 24 7 4.1689 0.4768 0.0012 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 3.2534 3.6758 0.0101 31 1 5.3167 4.9829 0.0881 32 1 7.9487 2.2018 -0.0482 33 1 12.7767 3.9533 -0.5616 34 1 7.5363 6.4653 -0.2652 35 1 6.5783 -0.8713 1.0307 36 1 5.8611 -1.3963 -0.5116 37 1 7.2988 -0.3469 -0.5101 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853242696.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:30 Heat of formation + Delta-G solvation = 100.320176 kcal Electronic energy + Delta-G solvation = -21918.833963 eV Core-core repulsion = 18506.092098 eV Total energy + Delta-G solvation = -3412.741865 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.85827 -39.49329 -38.46441 -35.79357 -33.41810 -32.82026 -31.46501 -31.05054 -30.17848 -28.34044 -27.32405 -24.93440 -23.62189 -22.67341 -22.23532 -20.39692 -19.70503 -18.43589 -17.81664 -16.58249 -16.34772 -15.86099 -15.52757 -15.05852 -14.77825 -14.65336 -14.26295 -13.75346 -13.50332 -13.23330 -13.13121 -12.88292 -12.66800 -12.51266 -12.16173 -11.72897 -11.67220 -11.49871 -11.32043 -11.19670 -10.91429 -10.70762 -10.51111 -10.23162 -9.52493 -9.02189 -8.84036 -8.70487 -8.55118 -8.02235 -6.56230 -6.53008 -4.20653 1.40591 1.73929 2.89291 2.95536 3.05374 3.10740 3.58060 3.59654 3.86108 4.14652 4.26008 4.48377 4.58438 4.86823 4.90771 4.98124 5.02195 5.20670 5.35263 5.49299 5.57200 5.66954 5.70834 5.76710 5.78235 5.89303 6.07457 6.26986 6.39311 6.46505 6.86313 6.98107 7.16908 7.21848 7.40085 7.72673 7.91534 8.08696 8.31377 8.66791 8.77244 9.38286 9.68363 10.39971 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.043167 B = 0.003121 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.491406 B = 8968.369996 C = 9578.796500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.067 3.933 3 O -0.306 6.306 4 C 0.387 3.613 5 C -0.333 4.333 6 C 0.464 3.536 7 N -0.595 5.595 8 C -0.057 4.057 9 C -0.030 4.030 10 N -0.262 5.262 11 N -0.144 5.144 12 C -0.322 4.322 13 H 0.116 0.884 14 C 0.046 3.954 15 N -0.770 5.770 16 Si 0.934 3.066 17 H -0.263 1.263 18 H -0.274 1.274 19 H -0.274 1.274 20 C -0.085 4.085 21 N -0.572 5.572 22 C 0.390 3.610 23 C -0.085 4.085 24 N -0.625 5.625 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.139 0.861 31 H 0.411 0.589 32 H 0.188 0.812 33 H 0.274 0.726 34 H 0.144 0.856 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.727 -5.719 0.885 15.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.008 4.008 3 O -0.212 6.212 4 C 0.205 3.795 5 C -0.363 4.363 6 C 0.220 3.780 7 N -0.214 5.214 8 C -0.163 4.163 9 C -0.206 4.206 10 N -0.092 5.092 11 N 0.089 4.911 12 C -0.454 4.454 13 H 0.133 0.867 14 C -0.171 4.171 15 N -0.397 5.397 16 Si 0.758 3.242 17 H -0.187 1.187 18 H -0.199 1.199 19 H -0.199 1.199 20 C -0.237 4.237 21 N -0.301 5.301 22 C 0.121 3.879 23 C -0.143 4.143 24 N -0.362 5.362 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.157 0.843 31 H 0.247 0.753 32 H 0.205 0.795 33 H 0.084 0.916 34 H 0.162 0.838 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.789 -6.630 0.769 14.426 hybrid contribution -1.147 1.790 0.030 2.126 sum -13.936 -4.840 0.799 14.774 Atomic orbital electron populations 1.21823 0.93275 1.02724 1.03196 1.22576 0.94382 0.81221 1.02667 1.86181 1.17049 1.30584 1.87409 1.19419 0.83634 0.89351 0.87122 1.20664 0.94083 0.96975 1.24531 1.18016 0.86926 0.86320 0.86747 1.41079 1.05540 1.03320 1.71467 1.17295 0.81379 0.94286 1.23388 1.24439 0.89043 1.00010 1.07121 1.78253 1.18729 0.86796 1.25438 1.44558 1.02817 1.04863 1.38895 1.19902 0.84137 0.88924 1.52447 0.86681 1.25627 0.99126 0.96740 0.95596 1.70222 1.21384 1.12502 1.35547 0.85777 0.80057 0.79897 0.78491 1.18733 1.19922 1.19918 1.21220 0.85663 0.96955 1.19828 1.68036 1.38850 0.97550 1.25683 1.22654 0.86692 0.92419 0.86134 1.20571 0.98005 0.91978 1.03762 1.67868 1.05981 1.33499 1.28862 0.91757 0.91743 0.90411 0.91564 0.91573 0.84295 0.75344 0.79548 0.91557 0.83834 0.89689 0.90044 0.89214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 37.16 0.38 -0.79 16 2 C 0.07 0.72 6.06 37.16 0.23 0.94 16 3 O -0.31 -4.26 10.13 -18.34 -0.19 -4.45 16 4 C 0.39 6.16 7.52 -16.79 -0.13 6.03 16 5 C -0.33 -5.31 9.99 -38.95 -0.39 -5.70 16 6 C 0.46 8.47 7.47 -154.67 -1.16 7.31 16 7 N -0.59 -10.93 5.60 -10.01 -0.06 -10.98 16 8 C -0.06 -1.31 6.91 -83.85 -0.58 -1.89 16 9 C -0.03 -0.75 10.86 -17.02 -0.18 -0.93 16 10 N -0.26 -7.44 10.40 30.81 0.32 -7.12 16 11 N -0.14 -3.93 3.74 -11.41 -0.04 -3.97 16 12 C -0.32 -8.49 10.25 -14.82 -0.15 -8.64 16 13 H 0.12 2.73 7.83 -52.48 -0.41 2.32 16 14 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 15 N -0.77 -21.26 11.81 55.49 0.66 -20.60 16 16 Si 0.93 18.85 29.55 -169.99 -5.02 13.83 16 17 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 18 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 19 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 20 C -0.09 -2.01 11.50 -16.37 -0.19 -2.20 16 21 N -0.57 -10.88 6.56 -10.01 -0.07 -10.95 16 22 C 0.39 6.47 7.64 -157.28 -1.20 5.27 16 23 C -0.08 -1.08 10.32 36.01 0.37 -0.70 16 24 N -0.63 -10.03 9.27 -10.86 -0.10 -10.13 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.72 8.12 -51.93 -0.42 0.29 16 29 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 30 H 0.14 1.87 8.06 -52.48 -0.42 1.45 16 31 H 0.41 6.07 8.84 -40.82 -0.36 5.71 16 32 H 0.19 4.45 5.64 -52.49 -0.30 4.15 16 33 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.14 2.85 8.06 -52.49 -0.42 2.43 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.09 1.16 8.14 -51.92 -0.42 0.74 16 LS Contribution 324.50 15.07 4.89 4.89 Total: -1.00 -32.33 324.50 -7.13 -39.46 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -4.43 Total: 10.24 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -3.10 Total: -0.21 kcal Atomic # 7 Polarization: -64.47 SS G_CDS: 0.71 Total: -63.76 kcal Atomic # 8 Polarization: -4.26 SS G_CDS: -0.19 Total: -4.45 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.02 Total: 13.83 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.33 -7.13 -39.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853242696.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.781 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds