Wall clock time and date at job start Tue Mar 31 2020 06:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.46868 * 2 1 4 4 C 1.35548 * 116.99885 * 179.97438 * 3 2 1 5 5 C 1.38917 * 120.46336 * 180.25353 * 4 3 2 6 6 C 1.39272 * 118.28032 * 180.22048 * 5 4 3 7 7 N 1.38611 * 120.49839 * 179.80261 * 6 5 4 8 8 C 1.40557 * 119.99993 * 185.60235 * 7 6 5 9 9 C 1.40671 * 126.08045 * 353.94826 * 8 7 6 10 10 N 1.30917 * 108.39103 * 179.97438 * 9 8 7 11 11 N 1.40067 * 108.40758 * 0.02562 * 10 9 8 12 12 C 1.37310 * 126.06961 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99952 * 180.02562 * 12 11 10 14 14 C 1.38979 * 119.99958 * 0.02562 * 12 11 10 15 15 N 1.31299 * 120.00245 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99905 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47207 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.47061 * 119.99956 * 16 14 12 19 19 H 1.48499 * 109.47190 * 240.00147 * 16 14 12 20 20 C 1.35675 * 126.08218 * 174.26494 * 8 7 6 21 21 N 1.33186 * 119.00081 * 359.52912 * 6 5 4 22 22 C 1.31710 * 120.82990 * 0.24904 * 21 6 5 23 23 C 1.50699 * 119.05171 * 180.02562 * 22 21 6 24 24 N 1.31779 * 121.89711 * 359.97438 * 22 21 6 25 25 H 1.08997 * 109.47779 * 300.00534 * 1 2 3 26 26 H 1.09003 * 109.47279 * 60.00195 * 1 2 3 27 27 H 1.09004 * 109.47074 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47194 * 240.00205 * 2 1 3 29 29 H 1.08995 * 109.46878 * 119.99304 * 2 1 3 30 30 H 1.08006 * 120.85933 * 0.02562 * 5 4 3 31 31 H 0.96997 * 119.99454 * 5.60121 * 7 6 5 32 32 H 1.08001 * 125.80787 * 0.02887 * 9 8 7 33 33 H 0.96997 * 120.00266 * 179.97438 * 15 14 12 34 34 H 1.07995 * 126.24995 * 359.97438 * 20 8 7 35 35 H 1.09000 * 109.46966 * 89.99721 * 23 22 21 36 36 H 1.08997 * 109.46944 * 210.00688 * 23 22 21 37 37 H 1.09009 * 109.46776 * 330.00457 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3501 1.5250 0.0005 5 6 3.8914 2.8043 0.0059 6 6 5.2780 2.9341 0.0015 7 7 5.8671 4.1888 0.0024 8 6 7.2620 4.3104 -0.1209 9 6 8.1881 3.2516 -0.1324 10 7 9.3894 3.7550 -0.2637 11 7 9.2788 5.1492 -0.3404 12 6 10.3175 6.0360 -0.4822 13 1 10.1193 7.0966 -0.5305 14 6 11.6239 5.5688 -0.5637 15 7 11.8649 4.2794 -0.5044 16 14 13.0370 6.7753 -0.7559 17 1 12.5034 8.1605 -0.7948 18 1 13.9670 6.6356 0.3934 19 1 13.7641 6.4888 -2.0187 20 6 7.9552 5.4702 -0.2439 21 7 6.0295 1.8345 0.0020 22 6 5.4766 0.6391 0.0016 23 6 6.3651 -0.5781 0.0028 24 7 4.1689 0.4768 0.0012 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 3.2534 3.6758 0.0101 31 1 5.3167 4.9829 0.0881 32 1 7.9487 2.2018 -0.0482 33 1 12.7767 3.9533 -0.5616 34 1 7.5363 6.4653 -0.2652 35 1 6.5783 -0.8713 1.0307 36 1 5.8611 -1.3963 -0.5116 37 1 7.2988 -0.3469 -0.5101 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853242696.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:30 Heat of formation + Delta-G solvation = 79.222602 kcal Electronic energy + Delta-G solvation = -21919.748823 eV Core-core repulsion = 18506.092098 eV Total energy + Delta-G solvation = -3413.656725 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.18395 -41.29457 -39.64166 -37.26354 -35.25138 -33.92767 -32.90643 -32.20790 -31.87731 -29.70207 -28.91308 -26.74662 -24.76847 -23.95931 -23.42076 -22.17052 -21.44487 -19.82530 -19.32090 -18.12257 -17.40578 -17.36810 -17.29112 -16.40405 -16.15769 -15.98657 -15.48296 -15.28746 -15.25530 -14.71127 -14.33801 -14.01829 -13.84129 -13.48434 -13.35578 -13.21751 -13.08532 -12.90601 -12.75864 -12.53573 -12.47439 -12.03114 -11.75614 -11.51431 -11.25766 -10.75275 -10.46465 -10.11654 -10.06241 -9.87677 -8.43733 -8.24995 -6.17209 0.11610 0.38693 1.33005 1.40797 1.58926 1.72305 1.80868 2.12668 2.34772 2.47513 2.90486 2.94370 3.09589 3.12195 3.52497 4.06377 4.11386 4.17017 4.31558 4.46605 4.48885 4.55707 4.64516 4.70744 4.78519 4.84964 4.96081 4.97638 5.06290 5.16290 5.22560 5.34138 5.36132 5.86056 5.92409 6.09255 6.27963 6.49320 6.68670 6.87732 7.39104 7.51362 7.75609 8.55864 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.043167 B = 0.003121 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.491406 B = 8968.369996 C = 9578.796500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.060 3.940 3 O -0.308 6.308 4 C 0.381 3.619 5 C -0.325 4.325 6 C 0.449 3.551 7 N -0.594 5.594 8 C -0.040 4.040 9 C -0.048 4.048 10 N -0.310 5.310 11 N -0.173 5.173 12 C -0.354 4.354 13 H 0.135 0.865 14 C -0.006 4.006 15 N -0.823 5.823 16 Si 1.016 2.984 17 H -0.244 1.244 18 H -0.272 1.272 19 H -0.272 1.272 20 C -0.088 4.088 21 N -0.604 5.604 22 C 0.380 3.620 23 C -0.082 4.082 24 N -0.620 5.620 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.101 0.899 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.165 0.835 31 H 0.427 0.573 32 H 0.194 0.806 33 H 0.276 0.724 34 H 0.180 0.820 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.570 -5.196 0.904 17.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.015 4.015 3 O -0.214 6.214 4 C 0.198 3.802 5 C -0.354 4.354 6 C 0.207 3.793 7 N -0.218 5.218 8 C -0.147 4.147 9 C -0.225 4.225 10 N -0.141 5.141 11 N 0.058 4.942 12 C -0.485 4.485 13 H 0.152 0.848 14 C -0.217 4.217 15 N -0.451 5.451 16 Si 0.836 3.164 17 H -0.167 1.167 18 H -0.197 1.197 19 H -0.198 1.198 20 C -0.238 4.238 21 N -0.334 5.334 22 C 0.111 3.889 23 C -0.140 4.140 24 N -0.356 5.356 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.120 0.880 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.183 0.817 31 H 0.267 0.733 32 H 0.210 0.790 33 H 0.085 0.915 34 H 0.197 0.803 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.715 -6.121 0.793 15.957 hybrid contribution -0.886 1.450 0.046 1.700 sum -15.601 -4.671 0.838 16.307 Atomic orbital electron populations 1.21839 0.90700 1.04382 1.03382 1.22877 0.96360 0.79702 1.02571 1.86201 1.15665 1.32575 1.86910 1.19666 0.84555 0.89395 0.86626 1.20847 0.93288 0.98139 1.23161 1.18286 0.87899 0.86094 0.87032 1.40906 1.03784 1.04346 1.72758 1.17324 0.83240 0.93194 1.20894 1.24692 0.89182 1.00965 1.07632 1.78139 1.20647 0.88255 1.27029 1.44807 1.04182 1.04528 1.40636 1.20549 0.84789 0.89874 1.53302 0.84754 1.26797 1.01842 0.98598 0.94468 1.70387 1.22077 1.14997 1.37628 0.84574 0.75780 0.77916 0.78165 1.16727 1.19739 1.19751 1.21888 0.84788 0.98780 1.18366 1.67985 1.40129 0.98619 1.26654 1.23288 0.87367 0.92704 0.85536 1.20677 0.97261 0.91160 1.04884 1.67963 1.05743 1.33629 1.28269 0.91527 0.91570 0.88017 0.91696 0.91629 0.81740 0.73337 0.78982 0.91459 0.80329 0.88244 0.87888 0.89888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 10.28 71.98 0.74 -1.10 16 2 C 0.06 1.15 6.06 71.98 0.44 1.59 16 3 O -0.31 -7.91 10.13 -88.54 -0.90 -8.81 16 4 C 0.38 11.44 7.52 84.68 0.64 12.08 16 5 C -0.33 -9.78 9.99 22.68 0.23 -9.55 16 6 C 0.45 15.99 7.47 132.99 0.99 16.98 16 7 N -0.59 -21.22 5.60 -185.59 -1.04 -22.26 16 8 C -0.04 -1.82 6.91 37.74 0.26 -1.56 16 9 C -0.05 -2.50 10.86 85.42 0.93 -1.57 16 10 N -0.31 -18.26 10.40 -56.45 -0.59 -18.85 16 11 N -0.17 -9.60 3.74 -190.00 -0.71 -10.31 16 12 C -0.35 -18.91 10.25 84.01 0.86 -18.04 16 13 H 0.14 6.32 7.83 -2.91 -0.02 6.29 16 14 C -0.01 -0.29 5.50 84.95 0.47 0.18 16 15 N -0.82 -47.12 11.81 21.66 0.26 -46.87 16 16 Si 1.02 38.85 29.55 68.60 2.03 40.88 16 17 H -0.24 -8.46 7.11 99.48 0.71 -7.75 16 18 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 19 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 20 C -0.09 -4.10 11.50 83.37 0.96 -3.14 16 21 N -0.60 -22.87 6.56 -185.57 -1.22 -24.09 16 22 C 0.38 12.30 7.64 138.78 1.06 13.36 16 23 C -0.08 -2.00 10.32 71.24 0.73 -1.27 16 24 N -0.62 -19.00 9.27 -300.84 -2.79 -21.78 16 25 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.06 1.28 8.12 -2.39 -0.02 1.26 16 29 H 0.07 1.28 8.12 -2.39 -0.02 1.26 16 30 H 0.17 3.97 8.06 -2.91 -0.02 3.95 16 31 H 0.43 11.85 8.84 -92.71 -0.82 11.03 16 32 H 0.19 9.49 5.64 -2.91 -0.02 9.48 16 33 H 0.28 14.46 8.31 -92.71 -0.77 13.69 16 34 H 0.18 6.78 8.06 -2.91 -0.02 6.76 16 35 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 Total: -1.00 -72.10 324.50 3.64 -68.47 By element: Atomic # 1 Polarization: 35.38 SS G_CDS: 0.29 Total: 35.67 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 8.30 Total: 7.95 kcal Atomic # 7 Polarization: -138.07 SS G_CDS: -6.09 Total: -144.15 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: -0.90 Total: -8.81 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.88 kcal Total: -72.10 3.64 -68.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853242696.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.689 kcal (2) G-P(sol) polarization free energy of solvation -72.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds