Wall clock time and date at job start Tue Mar 31 2020 06:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47465 * 2 1 4 4 N 1.39928 * 125.75771 * 269.98089 * 3 2 1 5 5 C 1.30453 * 108.90151 * 179.75370 * 4 3 2 6 6 C 1.41298 * 108.02266 * 0.40469 * 5 4 3 7 7 C 1.47423 * 126.41428 * 179.85482 * 6 5 4 8 8 O 1.21624 * 119.99596 * 179.69155 * 7 6 5 9 9 N 1.34773 * 120.00015 * 359.68768 * 7 6 5 10 10 C 1.40566 * 120.00060 * 180.02562 * 9 7 6 11 11 C 1.40657 * 126.07931 * 359.97438 * 10 9 7 12 12 N 1.30913 * 108.38554 * 179.77343 * 11 10 9 13 13 N 1.40071 * 108.41017 * 0.38728 * 12 11 10 14 14 C 1.37314 * 126.07199 * 179.87347 * 13 12 11 15 15 H 1.07998 * 120.00425 * 185.44900 * 14 13 12 16 16 C 1.38989 * 119.99795 * 5.17680 * 14 13 12 17 17 N 1.31295 * 120.00227 * 354.31110 * 16 14 13 18 18 Si 1.86803 * 120.00145 * 174.31102 * 16 14 13 19 19 H 1.48494 * 109.47248 * 94.97708 * 18 16 14 20 20 H 1.48500 * 109.47261 * 214.98192 * 18 16 14 21 21 H 1.48506 * 109.46671 * 334.98298 * 18 16 14 22 22 C 1.35681 * 126.08607 * 179.97438 * 10 9 7 23 23 C 1.34281 * 125.75211 * 89.99558 * 3 2 1 24 24 C 1.50694 * 126.29259 * 359.97438 * 23 3 2 25 25 H 1.08998 * 109.47437 * 59.99741 * 1 2 3 26 26 H 1.08996 * 109.47404 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47399 * 299.99934 * 1 2 3 28 28 H 1.09003 * 109.47365 * 240.00541 * 2 1 3 29 29 H 1.08998 * 109.47437 * 120.00259 * 2 1 3 30 30 H 1.07997 * 125.99506 * 180.24107 * 5 4 3 31 31 H 0.97005 * 120.00026 * 0.02562 * 9 7 6 32 32 H 1.07997 * 125.81137 * 0.02562 * 11 10 9 33 33 H 0.96997 * 120.00133 * 179.97438 * 17 16 14 34 34 H 1.08007 * 126.24684 * 0.02562 * 22 10 9 35 35 H 1.09003 * 109.47552 * 269.97005 * 24 23 3 36 36 H 1.08999 * 109.47386 * 29.97757 * 24 23 3 37 37 H 1.09005 * 109.47171 * 149.97051 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2913 2.1519 -1.1355 5 6 2.7025 3.3308 -0.7572 6 6 2.7171 3.3562 0.6554 7 6 3.1182 4.4914 1.5062 8 8 3.0805 4.3866 2.7173 9 7 3.5267 5.6451 0.9419 10 6 3.9097 6.7273 1.7531 11 6 3.9158 6.7468 3.1595 12 7 4.3370 7.9218 3.5543 13 7 4.6069 8.6988 2.4206 14 6 5.0657 9.9931 2.4180 15 1 5.1578 10.5315 1.4864 16 6 5.4060 10.6121 3.6150 17 7 5.1846 10.0015 4.7560 18 14 6.1786 12.3128 3.6004 19 1 5.1203 13.3388 3.7803 20 1 7.1638 12.4186 4.7065 21 1 6.8659 12.5330 2.3025 22 6 4.3391 7.9388 1.3188 23 6 2.2799 2.1209 1.0898 24 6 2.1244 1.6831 2.5233 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.9849 4.1440 -1.4094 31 1 3.5565 5.7286 -0.0241 32 1 3.6264 5.9300 3.8041 33 1 5.4225 10.4334 5.5914 34 1 4.4482 8.2463 0.2892 35 1 1.1183 1.9210 2.8688 36 1 2.2884 0.6079 2.5947 37 1 2.8541 2.2039 3.1434 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865058082.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:41 Heat of formation + Delta-G solvation = 121.108773 kcal Electronic energy + Delta-G solvation = -21941.538013 eV Core-core repulsion = 18529.697610 eV Total energy + Delta-G solvation = -3411.840404 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.46445 -39.66077 -38.14299 -34.84054 -34.10770 -33.05464 -32.12738 -30.28063 -29.78143 -27.96832 -26.95813 -24.88311 -24.04397 -22.47999 -20.88649 -20.46440 -19.33031 -19.22070 -17.61927 -16.93115 -15.99404 -15.55704 -15.38153 -15.02770 -14.86979 -14.23369 -14.08373 -13.95888 -13.32277 -13.21469 -13.10877 -12.93570 -12.82657 -12.60692 -12.43675 -12.09196 -11.65654 -11.62506 -11.33480 -11.21873 -10.90296 -10.78820 -10.48972 -10.04554 -9.47107 -9.09578 -9.05591 -8.72468 -8.56385 -7.97430 -6.58562 -6.50346 -4.15614 1.57620 2.22842 2.25519 2.99621 3.08906 3.14056 3.51902 3.75727 3.94980 3.97461 4.27433 4.52209 4.57858 4.61148 4.73518 4.80476 4.92429 5.00961 5.07326 5.20009 5.28382 5.41703 5.52746 5.59490 5.67859 5.88984 6.11571 6.32520 6.39038 6.59507 6.82337 6.99941 7.06400 7.23586 7.34090 7.54070 7.93468 8.30886 8.40334 8.72592 9.02597 9.45760 9.75199 10.46087 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.051098 B = 0.002969 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.834917 B = 9428.257595 C = 9867.328213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.125 3.875 3 N -0.364 5.364 4 N -0.303 5.303 5 C 0.080 3.920 6 C -0.283 4.283 7 C 0.580 3.420 8 O -0.544 6.544 9 N -0.621 5.621 10 C -0.053 4.053 11 C -0.033 4.033 12 N -0.262 5.262 13 N -0.145 5.145 14 C -0.324 4.324 15 H 0.115 0.885 16 C 0.046 3.954 17 N -0.771 5.771 18 Si 0.933 3.067 19 H -0.272 1.272 20 H -0.276 1.276 21 H -0.264 1.264 22 C -0.084 4.084 23 C 0.152 3.848 24 C -0.098 4.098 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.188 0.812 31 H 0.395 0.605 32 H 0.177 0.823 33 H 0.274 0.726 34 H 0.145 0.855 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.171 -16.112 -9.116 19.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.004 3.996 3 N -0.145 5.145 4 N -0.122 5.122 5 C -0.108 4.108 6 C -0.298 4.298 7 C 0.367 3.633 8 O -0.423 6.423 9 N -0.262 5.262 10 C -0.159 4.159 11 C -0.209 4.209 12 N -0.093 5.093 13 N 0.087 4.913 14 C -0.456 4.456 15 H 0.133 0.867 16 C -0.171 4.171 17 N -0.398 5.398 18 Si 0.757 3.243 19 H -0.197 1.197 20 H -0.201 1.201 21 H -0.188 1.188 22 C -0.235 4.235 23 C 0.021 3.979 24 C -0.156 4.156 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.082 0.918 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.205 0.795 31 H 0.228 0.772 32 H 0.194 0.806 33 H 0.084 0.916 34 H 0.163 0.837 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.216 -16.310 -8.014 19.207 hybrid contribution 0.318 0.813 -0.836 1.208 sum -5.898 -15.498 -8.850 18.796 Atomic orbital electron populations 1.22186 0.94050 1.03146 1.03499 1.21724 0.95431 0.77804 1.04601 1.48501 1.50429 1.12174 1.03412 1.77109 1.22981 1.04468 1.07633 1.24024 0.97206 0.95503 0.94061 1.20093 1.19837 0.96487 0.93370 1.16995 0.78108 0.81215 0.86935 1.90611 1.55600 1.82132 1.13992 1.42256 1.64117 1.11319 1.08541 1.17254 1.18829 0.88866 0.90949 1.24123 1.06591 0.97790 0.92400 1.78231 1.22476 1.01820 1.06756 1.44519 1.35684 1.08854 1.02240 1.19840 1.44064 0.85819 0.95844 0.86708 1.25626 0.96411 1.00359 0.94655 1.70225 1.35453 1.36406 0.97680 0.85844 0.79065 0.80513 0.78904 1.19728 1.20100 1.18788 1.21263 1.16731 0.92625 0.92874 1.21480 0.94696 0.90753 0.91014 1.20683 1.05192 1.01132 0.88613 0.91518 0.90383 0.91777 0.88507 0.88707 0.79485 0.77234 0.80642 0.91571 0.83746 0.89670 0.91556 0.87183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.07 10.24 37.16 0.38 -0.69 16 2 C 0.13 0.91 6.93 -4.04 -0.03 0.88 16 3 N -0.36 -4.22 3.58 -56.60 -0.20 -4.42 16 4 N -0.30 -3.99 12.50 30.86 0.39 -3.60 16 5 C 0.08 1.03 11.50 -16.97 -0.20 0.83 16 6 C -0.28 -4.26 6.13 -105.06 -0.64 -4.91 16 7 C 0.58 10.78 7.78 -12.52 -0.10 10.69 16 8 O -0.54 -11.67 11.99 5.26 0.06 -11.60 16 9 N -0.62 -11.54 5.46 -10.97 -0.06 -11.60 16 10 C -0.05 -1.26 6.90 -83.85 -0.58 -1.84 16 11 C -0.03 -0.89 10.85 -17.03 -0.18 -1.08 16 12 N -0.26 -7.72 10.42 30.80 0.32 -7.40 16 13 N -0.14 -4.04 3.74 -11.41 -0.04 -4.08 16 14 C -0.32 -8.68 10.24 -14.82 -0.15 -8.83 16 15 H 0.12 2.76 7.84 -52.49 -0.41 2.34 16 16 C 0.05 1.21 5.50 -17.50 -0.10 1.12 16 17 N -0.77 -21.81 11.84 55.50 0.66 -21.15 16 18 Si 0.93 19.17 29.56 -169.99 -5.02 14.14 16 19 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 20 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.26 -5.19 7.11 56.52 0.40 -4.78 16 22 C -0.08 -2.02 11.49 -16.39 -0.19 -2.20 16 23 C 0.15 1.99 7.01 -81.59 -0.57 1.42 16 24 C -0.10 -1.07 9.57 36.00 0.34 -0.73 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 0.49 7.02 -51.93 -0.36 0.13 16 30 H 0.19 1.80 7.50 -52.49 -0.39 1.40 16 31 H 0.39 5.74 7.78 -40.82 -0.32 5.42 16 32 H 0.18 4.62 5.91 -52.49 -0.31 4.31 16 33 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.15 2.88 8.06 -52.48 -0.42 2.46 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.51 7.05 -51.93 -0.37 0.15 16 37 H 0.11 1.47 6.50 -51.93 -0.34 1.14 16 LS Contribution 321.20 15.07 4.84 4.84 Total: -1.00 -35.38 321.20 -5.25 -40.63 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -4.17 Total: 9.60 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -2.01 Total: -5.34 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 1.06 Total: -52.26 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.06 Total: -11.60 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.14 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -35.38 -5.25 -40.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865058082.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.734 kcal (2) G-P(sol) polarization free energy of solvation -35.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds