Wall clock time and date at job start Tue Mar 31 2020 06:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47465 * 2 1 4 4 N 1.39928 * 125.75771 * 269.98089 * 3 2 1 5 5 C 1.30453 * 108.90151 * 179.75370 * 4 3 2 6 6 C 1.41298 * 108.02266 * 0.40469 * 5 4 3 7 7 C 1.47423 * 126.41428 * 179.85482 * 6 5 4 8 8 O 1.21624 * 119.99596 * 179.69155 * 7 6 5 9 9 N 1.34773 * 120.00015 * 359.68768 * 7 6 5 10 10 C 1.40566 * 120.00060 * 180.02562 * 9 7 6 11 11 C 1.40657 * 126.07931 * 359.97438 * 10 9 7 12 12 N 1.30913 * 108.38554 * 179.77343 * 11 10 9 13 13 N 1.40071 * 108.41017 * 0.38728 * 12 11 10 14 14 C 1.37314 * 126.07199 * 179.87347 * 13 12 11 15 15 H 1.07998 * 120.00425 * 185.44900 * 14 13 12 16 16 C 1.38989 * 119.99795 * 5.17680 * 14 13 12 17 17 N 1.31295 * 120.00227 * 354.31110 * 16 14 13 18 18 Si 1.86803 * 120.00145 * 174.31102 * 16 14 13 19 19 H 1.48494 * 109.47248 * 94.97708 * 18 16 14 20 20 H 1.48500 * 109.47261 * 214.98192 * 18 16 14 21 21 H 1.48506 * 109.46671 * 334.98298 * 18 16 14 22 22 C 1.35681 * 126.08607 * 179.97438 * 10 9 7 23 23 C 1.34281 * 125.75211 * 89.99558 * 3 2 1 24 24 C 1.50694 * 126.29259 * 359.97438 * 23 3 2 25 25 H 1.08998 * 109.47437 * 59.99741 * 1 2 3 26 26 H 1.08996 * 109.47404 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47399 * 299.99934 * 1 2 3 28 28 H 1.09003 * 109.47365 * 240.00541 * 2 1 3 29 29 H 1.08998 * 109.47437 * 120.00259 * 2 1 3 30 30 H 1.07997 * 125.99506 * 180.24107 * 5 4 3 31 31 H 0.97005 * 120.00026 * 0.02562 * 9 7 6 32 32 H 1.07997 * 125.81137 * 0.02562 * 11 10 9 33 33 H 0.96997 * 120.00133 * 179.97438 * 17 16 14 34 34 H 1.08007 * 126.24684 * 0.02562 * 22 10 9 35 35 H 1.09003 * 109.47552 * 269.97005 * 24 23 3 36 36 H 1.08999 * 109.47386 * 29.97757 * 24 23 3 37 37 H 1.09005 * 109.47171 * 149.97051 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2913 2.1519 -1.1355 5 6 2.7025 3.3308 -0.7572 6 6 2.7171 3.3562 0.6554 7 6 3.1182 4.4914 1.5062 8 8 3.0805 4.3866 2.7173 9 7 3.5267 5.6451 0.9419 10 6 3.9097 6.7273 1.7531 11 6 3.9158 6.7468 3.1595 12 7 4.3370 7.9218 3.5543 13 7 4.6069 8.6988 2.4206 14 6 5.0657 9.9931 2.4180 15 1 5.1578 10.5315 1.4864 16 6 5.4060 10.6121 3.6150 17 7 5.1846 10.0015 4.7560 18 14 6.1786 12.3128 3.6004 19 1 5.1203 13.3388 3.7803 20 1 7.1638 12.4186 4.7065 21 1 6.8659 12.5330 2.3025 22 6 4.3391 7.9388 1.3188 23 6 2.2799 2.1209 1.0898 24 6 2.1244 1.6831 2.5233 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.9849 4.1440 -1.4094 31 1 3.5565 5.7286 -0.0241 32 1 3.6264 5.9300 3.8041 33 1 5.4225 10.4334 5.5914 34 1 4.4482 8.2463 0.2892 35 1 1.1183 1.9210 2.8688 36 1 2.2884 0.6079 2.5947 37 1 2.8541 2.2039 3.1434 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865058082.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:41 Heat of formation + Delta-G solvation = 96.156156 kcal Electronic energy + Delta-G solvation = -21942.620040 eV Core-core repulsion = 18529.697610 eV Total energy + Delta-G solvation = -3412.922431 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.48684 -41.52112 -39.74394 -35.90357 -35.57959 -34.83568 -33.10057 -32.21114 -30.84923 -29.51513 -28.19981 -26.71066 -24.86042 -23.72234 -22.75186 -21.75786 -20.99441 -20.42845 -19.26673 -18.31559 -17.40507 -17.08572 -16.65022 -16.42482 -15.88783 -15.75460 -15.58733 -14.93994 -14.83956 -14.79503 -14.57747 -14.06414 -13.88886 -13.46968 -13.33890 -13.22834 -13.19889 -12.88929 -12.86294 -12.76417 -12.22805 -12.06033 -11.79918 -11.75714 -10.96180 -10.77951 -10.58482 -10.37264 -10.05006 -9.65743 -8.44387 -8.42705 -6.19288 0.50838 1.12919 1.35552 1.38853 1.42253 1.59864 1.79646 2.11533 2.24895 2.43703 2.80964 3.00097 3.12211 3.52949 3.62177 3.98448 4.03605 4.07623 4.25264 4.36475 4.46634 4.53901 4.66409 4.67727 4.76604 4.84005 4.97368 5.05373 5.12804 5.20261 5.22943 5.34345 5.45710 5.57339 5.94608 6.00816 6.38394 6.54863 6.78630 6.88277 7.49194 7.53865 7.74272 8.56076 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.051098 B = 0.002969 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.834917 B = 9428.257595 C = 9867.328213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.113 3.887 3 N -0.356 5.356 4 N -0.318 5.318 5 C 0.086 3.914 6 C -0.315 4.315 7 C 0.580 3.420 8 O -0.578 6.578 9 N -0.615 5.615 10 C -0.038 4.038 11 C -0.059 4.059 12 N -0.311 5.311 13 N -0.170 5.170 14 C -0.354 4.354 15 H 0.140 0.860 16 C -0.007 4.007 17 N -0.826 5.826 18 Si 1.019 2.981 19 H -0.265 1.265 20 H -0.277 1.277 21 H -0.244 1.244 22 C -0.082 4.082 23 C 0.157 3.843 24 C -0.096 4.096 25 H 0.049 0.951 26 H 0.106 0.894 27 H 0.056 0.944 28 H 0.109 0.891 29 H 0.121 0.879 30 H 0.215 0.785 31 H 0.416 0.584 32 H 0.170 0.830 33 H 0.276 0.724 34 H 0.188 0.812 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.317 -16.962 -11.419 21.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.006 4.006 3 N -0.136 5.136 4 N -0.137 5.137 5 C -0.102 4.102 6 C -0.330 4.330 7 C 0.370 3.630 8 O -0.460 6.460 9 N -0.259 5.259 10 C -0.145 4.145 11 C -0.234 4.234 12 N -0.143 5.143 13 N 0.060 4.940 14 C -0.485 4.485 15 H 0.157 0.843 16 C -0.219 4.219 17 N -0.454 5.454 18 Si 0.837 3.163 19 H -0.190 1.190 20 H -0.202 1.202 21 H -0.167 1.167 22 C -0.232 4.232 23 C 0.023 3.977 24 C -0.154 4.154 25 H 0.068 0.932 26 H 0.125 0.875 27 H 0.076 0.924 28 H 0.127 0.873 29 H 0.139 0.861 30 H 0.232 0.768 31 H 0.253 0.747 32 H 0.187 0.813 33 H 0.085 0.915 34 H 0.205 0.795 35 H 0.111 0.889 36 H 0.122 0.878 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.387 -17.217 -10.394 21.101 hybrid contribution 0.259 0.828 -0.190 0.888 sum -6.128 -16.389 -10.584 20.449 Atomic orbital electron populations 1.22158 0.93194 1.04652 1.02313 1.22207 0.96119 0.75724 1.06554 1.48875 1.49115 1.13206 1.02443 1.77087 1.23353 1.04705 1.08520 1.24418 0.96275 0.96163 0.93311 1.19880 1.22814 0.96163 0.94103 1.17552 0.76837 0.81715 0.86924 1.90596 1.56797 1.82765 1.15811 1.42171 1.64249 1.10208 1.09250 1.17320 1.16872 0.90041 0.90222 1.24195 1.07646 0.97328 0.94266 1.78126 1.24183 1.03110 1.08881 1.44816 1.36880 1.09602 1.02655 1.20589 1.44544 0.86065 0.97337 0.84281 1.26876 0.96217 1.04987 0.93771 1.70406 1.37386 1.38924 0.98644 0.84592 0.77920 0.74234 0.79519 1.18984 1.20231 1.16696 1.21987 1.15043 0.92168 0.93979 1.21767 0.93324 0.90426 0.92208 1.20702 1.04691 1.03139 0.86866 0.93158 0.87544 0.92446 0.87302 0.86078 0.76812 0.74714 0.81320 0.91468 0.79549 0.88933 0.87846 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 10.24 71.98 0.74 -0.88 16 2 C 0.11 1.28 6.93 86.38 0.60 1.88 16 3 N -0.36 -7.44 3.58 -332.99 -1.19 -8.63 16 4 N -0.32 -7.69 12.50 -56.27 -0.70 -8.39 16 5 C 0.09 2.04 11.50 85.65 0.99 3.03 16 6 C -0.31 -9.18 6.13 -20.15 -0.12 -9.30 16 7 C 0.58 21.62 7.78 86.66 0.67 22.29 16 8 O -0.58 -25.62 11.99 -4.11 -0.05 -25.67 16 9 N -0.61 -22.46 5.46 -306.86 -1.67 -24.13 16 10 C -0.04 -1.82 6.90 37.74 0.26 -1.56 16 11 C -0.06 -3.29 10.85 85.42 0.93 -2.36 16 12 N -0.31 -19.12 10.42 -56.46 -0.59 -19.71 16 13 N -0.17 -9.64 3.74 -190.01 -0.71 -10.35 16 14 C -0.35 -19.09 10.24 84.01 0.86 -18.23 16 15 H 0.14 6.50 7.84 -2.91 -0.02 6.47 16 16 C -0.01 -0.38 5.50 84.95 0.47 0.09 16 17 N -0.83 -48.41 11.84 21.66 0.26 -48.15 16 18 Si 1.02 39.20 29.56 68.60 2.03 41.23 16 19 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 20 H -0.28 -10.59 7.11 99.48 0.71 -9.88 16 21 H -0.24 -8.51 7.11 99.48 0.71 -7.80 16 22 C -0.08 -3.86 11.49 83.37 0.96 -2.90 16 23 C 0.16 3.87 7.01 42.14 0.30 4.17 16 24 C -0.10 -1.97 9.57 71.23 0.68 -1.29 16 25 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.12 0.76 7.02 -2.39 -0.02 0.74 16 30 H 0.22 3.54 7.50 -2.91 -0.02 3.52 16 31 H 0.42 11.32 7.78 -92.70 -0.72 10.60 16 32 H 0.17 9.44 5.91 -2.91 -0.02 9.42 16 33 H 0.28 14.83 8.31 -92.71 -0.77 14.06 16 34 H 0.19 6.95 8.06 -2.91 -0.02 6.93 16 35 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.10 1.30 7.05 -2.39 -0.02 1.28 16 37 H 0.08 2.23 6.50 -2.38 -0.02 2.21 16 Total: -1.00 -81.01 321.20 5.09 -75.92 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: 0.40 Total: 32.95 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: 7.32 Total: -5.07 kcal Atomic # 7 Polarization: -114.75 SS G_CDS: -4.61 Total: -119.36 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.05 Total: -25.67 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Total: -81.01 5.09 -75.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865058082.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.077 kcal (2) G-P(sol) polarization free energy of solvation -81.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds