Wall clock time and date at job start Tue Mar 31 2020 06:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 116.99756 * 2 1 4 4 O 1.20824 * 119.99922 * 0.02562 * 3 2 1 5 5 C 1.50705 * 120.00075 * 180.02562 * 3 2 1 6 6 H 1.08996 * 110.46183 * 56.59254 * 5 3 2 7 7 C 1.54380 * 110.40911 * 294.18038 * 5 3 2 8 8 C 1.54258 * 105.14954 * 217.42325 * 7 5 3 9 9 F 1.39899 * 110.32674 * 118.84207 * 8 7 5 10 10 F 1.39903 * 110.32220 * 240.95205 * 8 7 5 11 11 C 1.54382 * 105.05692 * 359.94404 * 8 7 5 12 12 N 1.48560 * 104.59921 * 23.85925 * 11 8 7 13 13 C 1.46895 * 110.99929 * 200.96038 * 12 11 8 14 14 C 1.53002 * 109.46878 * 283.80268 * 13 12 11 15 15 C 1.50693 * 115.55427 * 280.75231 * 14 13 12 16 16 H 1.08005 * 120.00245 * 148.80664 * 15 14 13 17 17 C 1.37875 * 120.00364 * 328.81144 * 15 14 13 18 18 N 1.31514 * 120.00711 * 158.00464 * 17 15 14 19 19 Si 1.86806 * 119.99653 * 338.00599 * 17 15 14 20 20 H 1.48498 * 109.47108 * 95.65411 * 19 17 15 21 21 H 1.48494 * 109.47260 * 215.65212 * 19 17 15 22 22 H 1.48499 * 109.47132 * 335.65235 * 19 17 15 23 23 C 1.53008 * 117.49345 * 135.04527 * 14 13 12 24 24 C 1.52997 * 117.49518 * 66.42792 * 14 13 12 25 25 H 1.08998 * 109.47378 * 299.99449 * 1 2 3 26 26 H 1.08997 * 109.47716 * 60.00518 * 1 2 3 27 27 H 1.09008 * 109.47030 * 179.97438 * 1 2 3 28 28 H 1.08993 * 110.32576 * 98.46980 * 7 5 3 29 29 H 1.09006 * 110.31926 * 336.36430 * 7 5 3 30 30 H 1.09004 * 110.40764 * 142.63836 * 11 8 7 31 31 H 1.09001 * 110.41303 * 265.07648 * 11 8 7 32 32 H 1.08996 * 109.47433 * 43.81141 * 13 12 11 33 33 H 1.09003 * 109.46953 * 163.81108 * 13 12 11 34 34 H 0.97001 * 120.00592 * 180.02562 * 18 17 15 35 35 H 1.08995 * 117.50106 * 0.02562 * 23 14 13 36 36 H 1.08994 * 117.49341 * 145.02291 * 23 14 13 37 37 H 1.09003 * 117.50039 * 214.97618 * 24 14 13 38 38 H 1.09000 * 117.50267 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9759 0.7336 -0.8533 7 6 4.1355 0.7111 1.3190 8 6 5.3388 1.6149 1.6579 9 9 5.1342 2.2571 2.8838 10 9 6.5170 0.8614 1.6956 11 6 5.3979 2.6496 0.5137 12 7 4.0136 2.6932 -0.0237 13 6 3.9965 3.2287 -1.3915 14 6 4.1755 4.7475 -1.3467 15 6 2.9407 5.5376 -0.9978 16 1 3.0307 6.4732 -0.4656 17 6 1.6960 5.0663 -1.3577 18 7 0.6251 5.4809 -0.7167 19 14 1.5307 3.8386 -2.7559 20 1 1.4858 2.4613 -2.2026 21 1 0.2798 4.1107 -3.5083 22 1 2.6952 3.9678 -3.6684 23 6 5.1576 5.3726 -2.3397 24 6 5.5209 5.2860 -0.8560 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 4.4630 -0.3192 1.1804 29 1 3.3862 0.7665 2.1088 30 1 5.6867 3.6272 0.8998 31 1 6.0952 2.3236 -0.2581 32 1 4.8088 2.7837 -1.9661 33 1 3.0437 2.9890 -1.8636 34 1 -0.2505 5.1491 -0.9697 35 1 5.6757 4.7018 -3.0251 36 1 4.9105 6.3554 -2.7408 37 1 5.5130 6.2120 -0.2810 38 1 6.2783 4.5583 -0.5647 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880331380.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:42 Heat of formation + Delta-G solvation = -114.696364 kcal Electronic energy + Delta-G solvation = -25204.129847 eV Core-core repulsion = 21299.082228 eV Total energy + Delta-G solvation = -3905.047619 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.84254 -46.93437 -40.36687 -38.56389 -36.32320 -35.81657 -32.05682 -31.25911 -29.64456 -27.43342 -26.51449 -24.75529 -22.95102 -21.78902 -21.10719 -20.24880 -19.09857 -17.84570 -17.16453 -17.00564 -16.40092 -16.18177 -16.05676 -15.76644 -15.13176 -14.53089 -14.30386 -14.01501 -13.66291 -13.37615 -13.27055 -13.12725 -13.11404 -12.61480 -12.43120 -12.34798 -11.99498 -11.90733 -11.67992 -11.60518 -10.98369 -10.93773 -10.50087 -10.36229 -10.06456 -9.94471 -9.81897 -9.39928 -9.23147 -8.71666 -8.26685 -8.03484 -6.01814 -3.84986 2.57383 2.73177 3.24513 3.41309 3.42630 3.55057 3.86817 4.08871 4.18941 4.50917 4.52172 4.90381 4.94536 5.00513 5.11336 5.27297 5.32432 5.36241 5.40304 5.52093 5.63688 5.68026 5.68993 5.80350 5.84890 5.97423 6.16066 6.44759 6.52629 6.63428 6.71075 6.85979 6.95005 7.14805 7.30756 7.91738 8.19621 8.63218 9.05664 9.68994 11.11278 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.013142 B = 0.009842 C = 0.006557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.120421 B = 2844.134081 C = 4269.356308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.371 6.371 3 C 0.444 3.556 4 O -0.425 6.425 5 C 0.068 3.932 6 H 0.090 0.910 7 C -0.147 4.147 8 C 0.284 3.716 9 F -0.184 7.184 10 F -0.197 7.197 11 C 0.000 4.000 12 N -0.452 5.452 13 C 0.073 3.927 14 C 0.033 3.967 15 C -0.488 4.488 16 H 0.073 0.927 17 C 0.107 3.893 18 N -0.866 5.866 19 Si 0.879 3.121 20 H -0.275 1.275 21 H -0.304 1.304 22 H -0.273 1.273 23 C -0.215 4.215 24 C -0.197 4.197 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.096 0.904 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.125 0.875 31 H 0.073 0.927 32 H 0.026 0.974 33 H 0.079 0.921 34 H 0.262 0.738 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.071 -13.399 1.439 14.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.289 6.289 3 C 0.282 3.718 4 O -0.305 6.305 5 C -0.042 4.042 6 H 0.107 0.893 7 C -0.185 4.185 8 C 0.247 3.753 9 F -0.165 7.165 10 F -0.178 7.178 11 C -0.128 4.128 12 N -0.177 5.177 13 C -0.053 4.053 14 C 0.032 3.968 15 C -0.524 4.524 16 H 0.091 0.909 17 C -0.099 4.099 18 N -0.500 5.500 19 Si 0.712 3.288 20 H -0.204 1.204 21 H -0.232 1.232 22 H -0.199 1.199 23 C -0.254 4.254 24 C -0.235 4.235 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.115 0.885 28 H 0.128 0.872 29 H 0.125 0.875 30 H 0.143 0.857 31 H 0.091 0.909 32 H 0.044 0.956 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.251 -12.697 1.816 13.859 hybrid contribution 0.237 -1.140 -1.201 1.672 sum 5.488 -13.836 0.615 14.898 Atomic orbital electron populations 1.23185 0.76601 1.02971 1.02805 1.86414 1.23144 1.33865 1.85444 1.23003 0.90978 0.81943 0.75915 1.90919 1.65521 1.35068 1.38979 1.22140 0.89894 0.93312 0.98822 0.89262 1.23228 0.97121 0.99959 0.98208 1.21610 0.82369 0.88255 0.83057 1.93053 1.94886 1.82462 1.46064 1.93008 1.50545 1.77372 1.96846 1.24359 0.92241 1.00759 0.95440 1.65167 1.16822 1.11853 1.23875 1.22379 1.00117 0.96882 0.85922 1.19090 0.90830 0.89051 0.97870 1.20035 0.87253 1.07410 1.37659 0.90858 1.24696 0.95594 0.94521 0.95072 1.69982 0.98897 1.44023 1.37097 0.87121 0.76488 0.82131 0.83073 1.20395 1.23222 1.19884 1.23247 1.07949 1.02768 0.91430 1.22933 1.00783 1.02710 0.97065 0.91793 0.92140 0.88509 0.87235 0.87456 0.85688 0.90866 0.95587 0.90380 0.92810 0.91807 0.89598 0.89833 0.91116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.56 101.05 1.07 1.57 16 2 O -0.37 -5.77 10.57 -39.26 -0.41 -6.18 16 3 C 0.44 8.30 6.28 36.01 0.23 8.52 16 4 O -0.43 -9.91 12.86 -18.75 -0.24 -10.15 16 5 C 0.07 1.11 2.78 -67.13 -0.19 0.93 16 6 H 0.09 1.24 8.00 -51.93 -0.42 0.82 16 7 C -0.15 -1.95 6.23 -25.35 -0.16 -2.11 16 8 C 0.28 4.13 2.70 -25.35 -0.07 4.06 16 9 F -0.18 -3.02 17.09 2.25 0.04 -2.98 16 10 F -0.20 -2.68 17.09 2.25 0.04 -2.64 16 11 C 0.00 0.01 4.44 -2.18 -0.01 0.00 16 12 N -0.45 -8.80 4.59 -223.37 -1.02 -9.82 16 13 C 0.07 1.55 3.96 -3.83 -0.02 1.54 16 14 C 0.03 0.77 1.51 -155.66 -0.23 0.54 16 15 C -0.49 -13.86 9.52 -34.44 -0.33 -14.19 16 16 H 0.07 2.27 8.06 -52.48 -0.42 1.85 16 17 C 0.11 3.10 5.20 -17.82 -0.09 3.01 16 18 N -0.87 -26.70 13.96 55.43 0.77 -25.92 16 19 Si 0.88 22.31 23.09 -169.99 -3.93 18.38 16 20 H -0.28 -6.66 4.71 56.52 0.27 -6.39 16 21 H -0.30 -7.85 7.11 56.52 0.40 -7.44 16 22 H -0.27 -6.66 7.09 56.52 0.40 -6.26 16 23 C -0.22 -4.49 9.88 -26.73 -0.26 -4.76 16 24 C -0.20 -3.97 8.62 -26.73 -0.23 -4.20 16 25 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 26 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 27 H 0.10 0.88 8.14 -51.92 -0.42 0.46 16 28 H 0.11 1.11 8.04 -51.93 -0.42 0.69 16 29 H 0.11 1.45 7.75 -51.93 -0.40 1.04 16 30 H 0.13 2.09 6.19 -51.93 -0.32 1.77 16 31 H 0.07 1.01 7.67 -51.93 -0.40 0.61 16 32 H 0.03 0.48 7.54 -51.93 -0.39 0.09 16 33 H 0.08 1.82 1.43 -51.93 -0.07 1.74 16 34 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 35 H 0.06 1.19 8.09 -51.93 -0.42 0.77 16 36 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 37 H 0.08 1.73 8.14 -51.93 -0.42 1.30 16 38 H 0.07 1.22 5.89 -51.93 -0.31 0.92 16 LS Contribution 307.49 15.07 4.63 4.63 Total: -1.00 -32.80 307.49 -5.37 -38.17 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -4.95 Total: 1.60 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -0.29 Total: -5.09 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: -0.25 Total: -35.74 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.66 Total: -16.33 kcal Atomic # 9 Polarization: -5.70 SS G_CDS: 0.08 Total: -5.62 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -3.93 Total: 18.38 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.80 -5.37 -38.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880331380.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.527 kcal (2) G-P(sol) polarization free energy of solvation -32.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds