Wall clock time and date at job start Tue Mar 31 2020 06:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 116.99756 * 2 1 4 4 O 1.20824 * 119.99922 * 0.02562 * 3 2 1 5 5 C 1.50705 * 120.00075 * 180.02562 * 3 2 1 6 6 H 1.08996 * 110.46183 * 56.59254 * 5 3 2 7 7 C 1.54380 * 110.40911 * 294.18038 * 5 3 2 8 8 C 1.54258 * 105.14954 * 217.42325 * 7 5 3 9 9 F 1.39899 * 110.32674 * 118.84207 * 8 7 5 10 10 F 1.39903 * 110.32220 * 240.95205 * 8 7 5 11 11 C 1.54382 * 105.05692 * 359.94404 * 8 7 5 12 12 N 1.48560 * 104.59921 * 23.85925 * 11 8 7 13 13 C 1.46895 * 110.99929 * 200.96038 * 12 11 8 14 14 C 1.53002 * 109.46878 * 283.80268 * 13 12 11 15 15 C 1.50693 * 115.55427 * 280.75231 * 14 13 12 16 16 H 1.08005 * 120.00245 * 148.80664 * 15 14 13 17 17 C 1.37875 * 120.00364 * 328.81144 * 15 14 13 18 18 N 1.31514 * 120.00711 * 158.00464 * 17 15 14 19 19 Si 1.86806 * 119.99653 * 338.00599 * 17 15 14 20 20 H 1.48498 * 109.47108 * 95.65411 * 19 17 15 21 21 H 1.48494 * 109.47260 * 215.65212 * 19 17 15 22 22 H 1.48499 * 109.47132 * 335.65235 * 19 17 15 23 23 C 1.53008 * 117.49345 * 135.04527 * 14 13 12 24 24 C 1.52997 * 117.49518 * 66.42792 * 14 13 12 25 25 H 1.08998 * 109.47378 * 299.99449 * 1 2 3 26 26 H 1.08997 * 109.47716 * 60.00518 * 1 2 3 27 27 H 1.09008 * 109.47030 * 179.97438 * 1 2 3 28 28 H 1.08993 * 110.32576 * 98.46980 * 7 5 3 29 29 H 1.09006 * 110.31926 * 336.36430 * 7 5 3 30 30 H 1.09004 * 110.40764 * 142.63836 * 11 8 7 31 31 H 1.09001 * 110.41303 * 265.07648 * 11 8 7 32 32 H 1.08996 * 109.47433 * 43.81141 * 13 12 11 33 33 H 1.09003 * 109.46953 * 163.81108 * 13 12 11 34 34 H 0.97001 * 120.00592 * 180.02562 * 18 17 15 35 35 H 1.08995 * 117.50106 * 0.02562 * 23 14 13 36 36 H 1.08994 * 117.49341 * 145.02291 * 23 14 13 37 37 H 1.09003 * 117.50039 * 214.97618 * 24 14 13 38 38 H 1.09000 * 117.50267 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9759 0.7336 -0.8533 7 6 4.1355 0.7111 1.3190 8 6 5.3388 1.6149 1.6579 9 9 5.1342 2.2571 2.8838 10 9 6.5170 0.8614 1.6956 11 6 5.3979 2.6496 0.5137 12 7 4.0136 2.6932 -0.0237 13 6 3.9965 3.2287 -1.3915 14 6 4.1755 4.7475 -1.3467 15 6 2.9407 5.5376 -0.9978 16 1 3.0307 6.4732 -0.4656 17 6 1.6960 5.0663 -1.3577 18 7 0.6251 5.4809 -0.7167 19 14 1.5307 3.8386 -2.7559 20 1 1.4858 2.4613 -2.2026 21 1 0.2798 4.1107 -3.5083 22 1 2.6952 3.9678 -3.6684 23 6 5.1576 5.3726 -2.3397 24 6 5.5209 5.2860 -0.8560 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 4.4630 -0.3192 1.1804 29 1 3.3862 0.7665 2.1088 30 1 5.6867 3.6272 0.8998 31 1 6.0952 2.3236 -0.2581 32 1 4.8088 2.7837 -1.9661 33 1 3.0437 2.9890 -1.8636 34 1 -0.2505 5.1491 -0.9697 35 1 5.6757 4.7018 -3.0251 36 1 4.9105 6.3554 -2.7408 37 1 5.5130 6.2120 -0.2810 38 1 6.2783 4.5583 -0.5647 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880331380.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:41 Heat of formation + Delta-G solvation = -138.315554 kcal Electronic energy + Delta-G solvation = -25205.154052 eV Core-core repulsion = 21299.082228 eV Total energy + Delta-G solvation = -3906.071824 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.97152 -48.07604 -41.71825 -39.96826 -37.85336 -37.24151 -34.21248 -32.55871 -30.88734 -28.64543 -28.15146 -26.49251 -24.27187 -23.24615 -22.43025 -21.54522 -20.95993 -19.08065 -18.48341 -18.30847 -18.08440 -17.60752 -17.44897 -17.05454 -16.66736 -15.84334 -15.68686 -15.32221 -15.10169 -14.89852 -14.73544 -14.59287 -14.40612 -14.18569 -13.77376 -13.58928 -13.40644 -13.31061 -12.95825 -12.82569 -12.73428 -12.30175 -12.17677 -11.90050 -11.71137 -11.55698 -11.37105 -11.32308 -11.02411 -10.45265 -10.17774 -9.52759 -8.22769 -6.08188 1.15809 1.24684 1.39146 1.46532 1.53636 2.35275 2.42654 2.71498 2.85860 3.01074 3.09396 3.42119 3.62990 3.78001 3.86706 3.95412 4.06497 4.08138 4.27514 4.31167 4.31987 4.37959 4.45925 4.54479 4.61032 4.65759 4.69587 4.85596 4.92822 5.08273 5.28582 5.35140 5.53466 5.57458 5.77804 5.90339 6.41769 6.82812 6.85546 7.48951 8.94388 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.013142 B = 0.009842 C = 0.006557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.120421 B = 2844.134081 C = 4269.356308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.359 6.359 3 C 0.443 3.557 4 O -0.484 6.484 5 C 0.066 3.934 6 H 0.126 0.874 7 C -0.136 4.136 8 C 0.288 3.712 9 F -0.200 7.200 10 F -0.187 7.187 11 C 0.000 4.000 12 N -0.492 5.492 13 C 0.079 3.921 14 C -0.002 4.002 15 C -0.496 4.496 16 H 0.020 0.980 17 C 0.057 3.943 18 N -0.922 5.922 19 Si 0.944 3.056 20 H -0.259 1.259 21 H -0.320 1.320 22 H -0.252 1.252 23 C -0.201 4.201 24 C -0.178 4.178 25 H 0.055 0.945 26 H 0.044 0.956 27 H 0.143 0.857 28 H 0.151 0.849 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.258 0.742 35 H 0.100 0.900 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.697 -16.902 0.242 19.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.276 6.276 3 C 0.283 3.717 4 O -0.368 6.368 5 C -0.043 4.043 6 H 0.143 0.857 7 C -0.174 4.174 8 C 0.251 3.749 9 F -0.181 7.181 10 F -0.168 7.168 11 C -0.128 4.128 12 N -0.218 5.218 13 C -0.048 4.048 14 C -0.004 4.004 15 C -0.533 4.533 16 H 0.038 0.962 17 C -0.143 4.143 18 N -0.559 5.559 19 Si 0.774 3.226 20 H -0.186 1.186 21 H -0.250 1.250 22 H -0.176 1.176 23 C -0.239 4.239 24 C -0.215 4.215 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.161 0.839 28 H 0.169 0.831 29 H 0.118 0.882 30 H 0.128 0.872 31 H 0.124 0.876 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.118 0.882 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.929 -16.234 0.622 18.078 hybrid contribution -0.553 0.011 -0.713 0.903 sum 7.376 -16.223 -0.091 17.821 Atomic orbital electron populations 1.23466 0.75359 1.05619 1.01690 1.86421 1.24322 1.32257 1.84611 1.23690 0.92166 0.81792 0.74002 1.90919 1.66911 1.36981 1.41993 1.22338 0.88259 0.92153 1.01599 0.85702 1.23249 0.96144 1.01591 0.96406 1.21537 0.83151 0.88215 0.81965 1.93029 1.95046 1.82920 1.47147 1.93032 1.50049 1.76948 1.96737 1.24354 0.91176 1.00679 0.96566 1.64941 1.19198 1.14372 1.23250 1.22167 1.00166 0.94988 0.87468 1.19052 0.89753 0.90618 1.00930 1.20250 0.90039 1.06233 1.36733 0.96152 1.25425 0.94994 0.96702 0.97214 1.70140 0.99378 1.46851 1.39517 0.86086 0.76138 0.80607 0.79736 1.18622 1.24957 1.17608 1.23240 1.06032 1.02430 0.92192 1.22954 0.99429 1.02486 0.96612 0.92639 0.93673 0.83886 0.83134 0.88206 0.87207 0.87636 0.91704 0.92667 0.93362 0.88189 0.90970 0.91578 0.87296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 10.56 113.37 1.20 1.98 16 2 O -0.36 -10.26 10.57 -51.42 -0.54 -10.80 16 3 C 0.44 15.78 6.28 71.24 0.45 16.23 16 4 O -0.48 -22.70 12.86 21.97 0.28 -22.42 16 5 C 0.07 1.91 2.78 44.29 0.12 2.04 16 6 H 0.13 2.76 8.00 -2.39 -0.02 2.74 16 7 C -0.14 -3.09 6.23 31.49 0.20 -2.89 16 8 C 0.29 7.40 2.70 31.49 0.09 7.49 16 9 F -0.20 -6.28 17.09 44.97 0.77 -5.51 16 10 F -0.19 -4.26 17.09 44.97 0.77 -3.49 16 11 C 0.00 0.00 4.44 86.45 0.38 0.38 16 12 N -0.49 -17.89 4.59 -860.60 -3.95 -21.84 16 13 C 0.08 3.08 3.96 86.31 0.34 3.43 16 14 C 0.00 -0.10 1.51 -52.93 -0.08 -0.18 16 15 C -0.50 -29.29 9.52 25.60 0.24 -29.05 16 16 H 0.02 1.35 8.06 -2.91 -0.02 1.33 16 17 C 0.06 3.45 5.20 84.65 0.44 3.89 16 18 N -0.92 -60.24 13.96 21.45 0.30 -59.94 16 19 Si 0.94 47.07 23.09 68.60 1.58 48.66 16 20 H -0.26 -12.11 4.71 99.48 0.47 -11.64 16 21 H -0.32 -16.46 7.11 99.48 0.71 -15.75 16 22 H -0.25 -11.44 7.09 99.48 0.71 -10.73 16 23 C -0.20 -7.80 9.88 30.60 0.30 -7.50 16 24 C -0.18 -6.78 8.62 30.59 0.26 -6.51 16 25 H 0.05 1.45 8.13 -2.39 -0.02 1.43 16 26 H 0.04 1.25 8.13 -2.39 -0.02 1.23 16 27 H 0.14 2.13 8.14 -2.38 -0.02 2.11 16 28 H 0.15 2.19 8.04 -2.39 -0.02 2.17 16 29 H 0.10 2.45 7.75 -2.38 -0.02 2.43 16 30 H 0.11 3.40 6.19 -2.38 -0.01 3.38 16 31 H 0.11 2.28 7.67 -2.39 -0.02 2.26 16 32 H 0.07 2.01 7.54 -2.39 -0.02 1.99 16 33 H 0.06 2.43 1.43 -2.39 0.00 2.42 16 34 H 0.26 16.12 8.31 -92.71 -0.77 15.35 16 35 H 0.10 3.20 8.09 -2.39 -0.02 3.18 16 36 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 37 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 38 H 0.11 3.31 5.89 -2.39 -0.01 3.29 16 Total: -1.00 -77.17 307.49 4.00 -73.17 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.85 Total: 12.86 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: 3.94 Total: -10.70 kcal Atomic # 7 Polarization: -78.12 SS G_CDS: -3.65 Total: -81.77 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -0.26 Total: -33.22 kcal Atomic # 9 Polarization: -10.53 SS G_CDS: 1.54 Total: -9.00 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.58 Total: 48.66 kcal Total: -77.17 4.00 -73.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880331380.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.143 kcal (2) G-P(sol) polarization free energy of solvation -77.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds