Wall clock time and date at job start Tue Mar 31 2020 06:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 O 1.42906 * 109.46748 * 179.97438 * 3 2 1 5 5 C 1.35511 * 116.99777 * 179.97438 * 4 3 2 6 6 C 1.39447 * 120.46513 * 179.72969 * 5 4 3 7 7 C 1.38211 * 118.51203 * 179.71268 * 6 5 4 8 8 N 1.32448 * 119.26910 * 0.55918 * 7 6 5 9 9 C 1.32491 * 120.88703 * 359.71982 * 8 7 6 10 10 N 1.38416 * 119.19227 * 180.02562 * 9 8 7 11 11 C 1.40592 * 119.99966 * 359.97438 * 10 9 8 12 12 C 1.40665 * 126.07631 * 0.02562 * 11 10 9 13 13 N 1.30919 * 108.38701 * 179.97438 * 12 11 10 14 14 N 1.40062 * 108.40926 * 0.02562 * 13 12 11 15 15 C 1.37314 * 126.07419 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00147 * 179.97438 * 15 14 13 17 17 C 1.38980 * 119.99883 * 359.97361 * 15 14 13 18 18 N 1.31310 * 119.99807 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00259 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47252 * 90.00118 * 19 17 15 21 21 H 1.48501 * 109.47564 * 210.00129 * 19 17 15 22 22 H 1.48508 * 109.47016 * 330.00050 * 19 17 15 23 23 C 1.35660 * 126.07990 * 179.71479 * 11 10 9 24 24 N 1.32514 * 121.62194 * 359.97438 * 9 8 7 25 25 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 26 26 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 28 28 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 29 29 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 30 30 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 31 31 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 32 32 H 1.08000 * 120.74559 * 359.97303 * 6 5 4 33 33 H 1.08002 * 120.37021 * 180.30548 * 7 6 5 34 34 H 0.97002 * 120.00191 * 179.97438 * 10 9 8 35 35 H 1.08001 * 125.80561 * 359.97438 * 12 11 10 36 36 H 0.96996 * 119.99954 * 179.97438 * 18 17 15 37 37 H 1.08004 * 126.24969 * 0.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 3.4689 1.4426 0.0006 5 6 4.0841 2.6501 0.0001 6 6 5.4760 2.7345 0.0063 7 6 6.0611 3.9866 -0.0005 8 7 5.2884 5.0624 -0.0013 9 6 3.9682 4.9515 -0.0013 10 7 3.1943 6.0992 -0.0028 11 6 3.8109 7.3627 -0.0037 12 6 5.1959 7.6086 -0.0038 13 7 5.3853 8.9040 -0.0053 14 7 4.1344 9.5340 -0.0057 15 6 3.9114 10.8889 -0.0076 16 1 2.9009 11.2699 -0.0081 17 6 4.9862 11.7700 -0.0090 18 7 6.2149 11.3067 -0.0088 19 14 4.6830 13.6132 -0.0124 20 1 4.6024 14.1042 1.3868 21 1 5.7992 14.2972 -0.7134 22 1 3.4064 13.9035 -0.7133 23 6 3.1759 8.5615 -0.0106 24 7 3.3702 3.7690 -0.0010 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6765 1.9564 -0.8900 31 1 1.6764 1.9564 0.8900 32 1 6.0832 1.8414 0.0120 33 1 7.1364 4.0868 -0.0009 34 1 2.2267 6.0317 -0.0032 35 1 5.9711 6.8566 -0.0028 36 1 6.9650 11.9216 -0.0102 37 1 2.1073 8.7181 -0.0160 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881869643.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:55 Heat of formation + Delta-G solvation = 105.096893 kcal Electronic energy + Delta-G solvation = -21677.911225 eV Core-core repulsion = 18265.376494 eV Total energy + Delta-G solvation = -3412.534731 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.84959 -39.48445 -38.51319 -35.29828 -34.17671 -33.36159 -32.60992 -30.34930 -30.14041 -27.47421 -26.80236 -24.93144 -23.68631 -22.90262 -21.70463 -20.56918 -19.73450 -18.53641 -17.68285 -17.17515 -16.54579 -15.66181 -15.44268 -15.08866 -15.03474 -14.93657 -14.45534 -13.93829 -13.81113 -13.47375 -13.21011 -12.95331 -12.73697 -12.35412 -11.94251 -11.67841 -11.39325 -11.32738 -11.29581 -11.02578 -10.97199 -10.78342 -10.53113 -10.27526 -9.86306 -9.27196 -8.82354 -8.69031 -8.40142 -8.01229 -6.54776 -6.51247 -4.19276 1.49645 1.59368 2.87455 2.97089 3.05527 3.10477 3.32560 3.57947 3.85879 4.17685 4.48170 4.53847 4.67478 4.68326 4.74378 4.94342 5.03409 5.21284 5.25957 5.29409 5.40359 5.44180 5.61230 5.68214 5.74654 5.81620 5.93093 6.28012 6.40074 6.45573 6.84745 6.96813 7.12845 7.22261 7.41250 7.64903 7.85691 8.07207 8.31510 8.66897 8.85353 9.39482 9.69820 10.41258 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.035700 B = 0.002971 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.130350 B = 9421.189272 C =10179.569242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.068 3.932 4 O -0.305 6.305 5 C 0.402 3.598 6 C -0.325 4.325 7 C 0.215 3.785 8 N -0.568 5.568 9 C 0.596 3.404 10 N -0.582 5.582 11 C -0.051 4.051 12 C -0.030 4.030 13 N -0.262 5.262 14 N -0.144 5.144 15 C -0.322 4.322 16 H 0.115 0.885 17 C 0.046 3.954 18 N -0.770 5.770 19 Si 0.934 3.066 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.264 1.264 23 C -0.084 4.084 24 N -0.635 5.635 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.141 0.859 33 H 0.171 0.829 34 H 0.412 0.588 35 H 0.190 0.810 36 H 0.274 0.726 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.190 -16.232 0.001 17.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.007 4.007 4 O -0.210 6.210 5 C 0.213 3.787 6 C -0.353 4.353 7 C 0.048 3.952 8 N -0.295 5.295 9 C 0.239 3.761 10 N -0.206 5.206 11 C -0.157 4.157 12 C -0.207 4.207 13 N -0.092 5.092 14 N 0.089 4.911 15 C -0.454 4.454 16 H 0.133 0.867 17 C -0.171 4.171 18 N -0.397 5.397 19 Si 0.758 3.242 20 H -0.196 1.196 21 H -0.201 1.201 22 H -0.188 1.188 23 C -0.235 4.235 24 N -0.375 5.375 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.159 0.841 33 H 0.188 0.812 34 H 0.248 0.752 35 H 0.207 0.793 36 H 0.085 0.915 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.512 -14.466 -0.003 15.480 hybrid contribution -1.015 -0.581 0.005 1.169 sum -6.527 -15.046 0.001 16.401 Atomic orbital electron populations 1.21672 0.94239 1.02273 1.02423 1.21527 0.96165 0.95122 1.03402 1.22712 0.77440 0.97736 1.02808 1.86198 1.22830 1.24742 1.87187 1.19593 0.89100 0.83613 0.86415 1.21400 0.92203 1.00693 1.21017 1.22865 1.00179 0.86181 0.85942 1.68236 1.04041 1.32284 1.24904 1.18725 0.85453 0.84220 0.87655 1.40684 1.07130 1.00349 1.72394 1.17198 0.92794 0.81891 1.23829 1.24523 0.94430 0.94528 1.07205 1.78257 1.01100 1.04174 1.25715 1.44551 1.02716 1.04540 1.39321 1.19855 0.95188 0.77039 1.53326 0.86715 1.25627 0.94616 1.01304 0.95542 1.70219 0.98222 1.35761 1.35503 0.85838 0.78847 0.80572 0.78951 1.19614 1.20096 1.18847 1.21179 0.94577 0.87566 1.20218 1.67300 1.41307 0.97901 1.31024 0.92288 0.91886 0.92294 0.91015 0.91016 0.91495 0.91507 0.84118 0.81219 0.75243 0.79342 0.91515 0.83784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.63 16 2 C -0.12 -1.02 6.30 -26.73 -0.17 -1.19 16 3 C 0.07 0.76 5.34 37.16 0.20 0.96 16 4 O -0.30 -4.12 10.13 -18.23 -0.18 -4.30 16 5 C 0.40 6.18 7.53 -16.72 -0.13 6.05 16 6 C -0.33 -4.46 10.12 -39.14 -0.40 -4.86 16 7 C 0.21 3.13 11.29 -17.30 -0.20 2.94 16 8 N -0.57 -10.61 6.45 -13.98 -0.09 -10.70 16 9 C 0.60 11.27 8.40 -322.77 -2.71 8.56 16 10 N -0.58 -11.28 5.61 -11.78 -0.07 -11.35 16 11 C -0.05 -1.17 6.92 -83.84 -0.58 -1.75 16 12 C -0.03 -0.77 10.81 -17.02 -0.18 -0.95 16 13 N -0.26 -7.48 10.40 30.81 0.32 -7.16 16 14 N -0.14 -3.95 3.74 -11.41 -0.04 -3.99 16 15 C -0.32 -8.52 10.25 -14.82 -0.15 -8.67 16 16 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 17 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 18 N -0.77 -21.36 11.81 55.49 0.66 -20.70 16 19 Si 0.93 18.91 29.55 -169.99 -5.02 13.89 16 20 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 21 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.26 -5.14 7.11 56.52 0.40 -4.73 16 23 C -0.08 -2.00 11.50 -16.38 -0.19 -2.19 16 24 N -0.63 -10.77 9.40 -13.97 -0.13 -10.90 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 31 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 32 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 33 H 0.17 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.41 6.84 8.94 -40.82 -0.36 6.47 16 35 H 0.19 4.49 5.56 -52.49 -0.29 4.20 16 36 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 37 H 0.14 2.90 8.06 -52.48 -0.42 2.48 16 LS Contribution 324.03 15.07 4.88 4.88 Total: -1.00 -32.07 324.03 -8.34 -40.41 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -4.43 Total: 10.57 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -4.23 Total: -0.64 kcal Atomic # 7 Polarization: -65.45 SS G_CDS: 0.65 Total: -64.81 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: -0.18 Total: -4.30 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.89 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.07 -8.34 -40.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881869643.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.504 kcal (2) G-P(sol) polarization free energy of solvation -32.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds