Wall clock time and date at job start Tue Mar 31 2020 06:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 O 1.42906 * 109.46748 * 179.97438 * 3 2 1 5 5 C 1.35511 * 116.99777 * 179.97438 * 4 3 2 6 6 C 1.39447 * 120.46513 * 179.72969 * 5 4 3 7 7 C 1.38211 * 118.51203 * 179.71268 * 6 5 4 8 8 N 1.32448 * 119.26910 * 0.55918 * 7 6 5 9 9 C 1.32491 * 120.88703 * 359.71982 * 8 7 6 10 10 N 1.38416 * 119.19227 * 180.02562 * 9 8 7 11 11 C 1.40592 * 119.99966 * 359.97438 * 10 9 8 12 12 C 1.40665 * 126.07631 * 0.02562 * 11 10 9 13 13 N 1.30919 * 108.38701 * 179.97438 * 12 11 10 14 14 N 1.40062 * 108.40926 * 0.02562 * 13 12 11 15 15 C 1.37314 * 126.07419 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00147 * 179.97438 * 15 14 13 17 17 C 1.38980 * 119.99883 * 359.97361 * 15 14 13 18 18 N 1.31310 * 119.99807 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00259 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47252 * 90.00118 * 19 17 15 21 21 H 1.48501 * 109.47564 * 210.00129 * 19 17 15 22 22 H 1.48508 * 109.47016 * 330.00050 * 19 17 15 23 23 C 1.35660 * 126.07990 * 179.71479 * 11 10 9 24 24 N 1.32514 * 121.62194 * 359.97438 * 9 8 7 25 25 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 26 26 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 28 28 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 29 29 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 30 30 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 31 31 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 32 32 H 1.08000 * 120.74559 * 359.97303 * 6 5 4 33 33 H 1.08002 * 120.37021 * 180.30548 * 7 6 5 34 34 H 0.97002 * 120.00191 * 179.97438 * 10 9 8 35 35 H 1.08001 * 125.80561 * 359.97438 * 12 11 10 36 36 H 0.96996 * 119.99954 * 179.97438 * 18 17 15 37 37 H 1.08004 * 126.24969 * 0.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 3.4689 1.4426 0.0006 5 6 4.0841 2.6501 0.0001 6 6 5.4760 2.7345 0.0063 7 6 6.0611 3.9866 -0.0005 8 7 5.2884 5.0624 -0.0013 9 6 3.9682 4.9515 -0.0013 10 7 3.1943 6.0992 -0.0028 11 6 3.8109 7.3627 -0.0037 12 6 5.1959 7.6086 -0.0038 13 7 5.3853 8.9040 -0.0053 14 7 4.1344 9.5340 -0.0057 15 6 3.9114 10.8889 -0.0076 16 1 2.9009 11.2699 -0.0081 17 6 4.9862 11.7700 -0.0090 18 7 6.2149 11.3067 -0.0088 19 14 4.6830 13.6132 -0.0124 20 1 4.6024 14.1042 1.3868 21 1 5.7992 14.2972 -0.7134 22 1 3.4064 13.9035 -0.7133 23 6 3.1759 8.5615 -0.0106 24 7 3.3702 3.7690 -0.0010 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6765 1.9564 -0.8900 31 1 1.6764 1.9564 0.8900 32 1 6.0832 1.8414 0.0120 33 1 7.1364 4.0868 -0.0009 34 1 2.2267 6.0317 -0.0032 35 1 5.9711 6.8566 -0.0028 36 1 6.9650 11.9216 -0.0102 37 1 2.1073 8.7181 -0.0160 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881869643.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:54 Heat of formation + Delta-G solvation = 85.628078 kcal Electronic energy + Delta-G solvation = -21678.755457 eV Core-core repulsion = 18265.376494 eV Total energy + Delta-G solvation = -3413.378962 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.15943 -41.28184 -39.68416 -36.78629 -35.17312 -34.99152 -33.90923 -32.11473 -31.63756 -29.21083 -27.67729 -26.78070 -24.86245 -24.29448 -22.61587 -22.27594 -21.41489 -20.05696 -19.02344 -18.74804 -17.54534 -17.43443 -16.87536 -16.59606 -16.31999 -16.09327 -15.60937 -15.39443 -15.27388 -14.71181 -14.67718 -14.58169 -13.60193 -13.44424 -13.16317 -13.03628 -13.00468 -12.80361 -12.75447 -12.28998 -12.07426 -12.03551 -11.69561 -11.59885 -11.30623 -10.88975 -10.74898 -10.06093 -10.01650 -9.78208 -8.43116 -8.24081 -6.16587 0.22981 0.34145 1.34077 1.40841 1.57876 1.69320 1.80655 2.01261 2.20625 2.47079 2.92105 3.02517 3.13271 3.29680 3.89346 3.91199 3.95518 4.10017 4.35183 4.49001 4.50290 4.53171 4.54888 4.64479 4.69833 4.82110 5.03533 5.09690 5.14465 5.17411 5.22908 5.35243 5.36846 5.88055 5.93816 6.07140 6.22837 6.43553 6.63288 6.83759 7.43523 7.52172 7.76258 8.56324 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.035700 B = 0.002971 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.130350 B = 9421.189272 C =10179.569242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C 0.064 3.936 4 O -0.303 6.303 5 C 0.386 3.614 6 C -0.305 4.305 7 C 0.208 3.792 8 N -0.602 5.602 9 C 0.583 3.417 10 N -0.588 5.588 11 C -0.032 4.032 12 C -0.046 4.046 13 N -0.310 5.310 14 N -0.172 5.172 15 C -0.355 4.355 16 H 0.135 0.865 17 C -0.005 4.005 18 N -0.823 5.823 19 Si 1.017 2.983 20 H -0.265 1.265 21 H -0.275 1.275 22 H -0.248 1.248 23 C -0.088 4.088 24 N -0.635 5.635 25 H 0.058 0.942 26 H 0.078 0.922 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.176 0.824 33 H 0.207 0.793 34 H 0.422 0.578 35 H 0.199 0.801 36 H 0.276 0.724 37 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.126 -17.645 -0.015 19.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.011 4.011 4 O -0.208 6.208 5 C 0.198 3.802 6 C -0.331 4.331 7 C 0.044 3.956 8 N -0.329 5.329 9 C 0.226 3.774 10 N -0.216 5.216 11 C -0.139 4.139 12 C -0.223 4.223 13 N -0.141 5.141 14 N 0.059 4.941 15 C -0.486 4.486 16 H 0.152 0.848 17 C -0.217 4.217 18 N -0.451 5.451 19 Si 0.836 3.164 20 H -0.190 1.190 21 H -0.200 1.200 22 H -0.171 1.171 23 C -0.239 4.239 24 N -0.376 5.376 25 H 0.077 0.923 26 H 0.097 0.903 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.193 0.807 33 H 0.223 0.777 34 H 0.260 0.740 35 H 0.215 0.785 36 H 0.086 0.914 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -6.460 -15.980 -0.020 17.236 hybrid contribution -0.742 -0.521 0.013 0.907 sum -7.202 -16.501 -0.007 18.004 Atomic orbital electron populations 1.21679 0.92998 1.03313 1.02423 1.21532 0.97085 0.93009 1.03893 1.22925 0.76185 0.99744 1.02204 1.86224 1.24113 1.23563 1.86852 1.20015 0.90051 0.83719 0.86449 1.21826 0.91849 1.01657 1.17786 1.23520 1.01561 0.85587 0.84928 1.68139 1.04375 1.34531 1.25878 1.18836 0.85773 0.84544 0.88249 1.40486 1.07615 0.99321 1.74131 1.17205 0.92050 0.83318 1.21354 1.24808 0.95958 0.93966 1.07582 1.78140 1.02936 1.05656 1.27323 1.44792 1.02873 1.05357 1.41059 1.20514 0.96526 0.77329 1.54215 0.84799 1.26800 0.93959 1.06604 0.94307 1.70386 0.99427 1.37718 1.37555 0.84628 0.79172 0.73452 0.79166 1.18968 1.20040 1.17107 1.21814 0.95840 0.87271 1.18930 1.67271 1.41659 0.97799 1.30884 0.92316 0.90322 0.92323 0.90507 0.90508 0.92107 0.92120 0.80661 0.77655 0.73980 0.78467 0.91431 0.80511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 71.98 0.71 -0.95 16 2 C -0.12 -1.69 6.30 30.60 0.19 -1.50 16 3 C 0.06 1.34 5.34 71.98 0.38 1.72 16 4 O -0.30 -7.56 10.13 -88.13 -0.89 -8.46 16 5 C 0.39 11.13 7.53 84.85 0.64 11.77 16 6 C -0.30 -7.49 10.12 22.55 0.23 -7.26 16 7 C 0.21 5.62 11.29 84.59 0.95 6.58 16 8 N -0.60 -22.07 6.45 -198.16 -1.28 -23.35 16 9 C 0.58 21.73 8.40 261.47 2.20 23.93 16 10 N -0.59 -22.67 5.61 -191.17 -1.07 -23.75 16 11 C -0.03 -1.51 6.92 37.73 0.26 -1.25 16 12 C -0.05 -2.42 10.81 85.42 0.92 -1.50 16 13 N -0.31 -18.31 10.40 -56.45 -0.59 -18.90 16 14 N -0.17 -9.64 3.74 -190.00 -0.71 -10.35 16 15 C -0.35 -19.08 10.25 84.01 0.86 -18.22 16 16 H 0.13 6.34 7.83 -2.91 -0.02 6.32 16 17 C -0.01 -0.27 5.50 84.95 0.47 0.20 16 18 N -0.82 -47.23 11.81 21.66 0.26 -46.98 16 19 Si 1.02 38.98 29.55 68.60 2.03 41.00 16 20 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 21 H -0.28 -10.39 7.11 99.48 0.71 -9.68 16 22 H -0.25 -8.72 7.11 99.48 0.71 -8.01 16 23 C -0.09 -4.19 11.50 83.36 0.96 -3.24 16 24 N -0.64 -20.92 9.40 -310.83 -2.92 -23.84 16 25 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.06 1.34 8.12 -2.39 -0.02 1.32 16 31 H 0.06 1.33 8.12 -2.39 -0.02 1.31 16 32 H 0.18 3.07 8.06 -2.91 -0.02 3.05 16 33 H 0.21 3.84 8.06 -2.91 -0.02 3.82 16 34 H 0.42 13.83 8.94 -92.71 -0.83 13.01 16 35 H 0.20 9.63 5.56 -2.91 -0.02 9.61 16 36 H 0.28 14.53 8.31 -92.71 -0.77 13.76 16 37 H 0.18 6.96 8.06 -2.91 -0.02 6.93 16 Total: -1.00 -71.86 324.03 3.88 -67.98 By element: Atomic # 1 Polarization: 36.07 SS G_CDS: 0.28 Total: 36.35 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 8.78 Total: 10.28 kcal Atomic # 7 Polarization: -140.85 SS G_CDS: -6.31 Total: -147.16 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: -0.89 Total: -8.46 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.00 kcal Total: -71.86 3.88 -67.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881869643.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.610 kcal (2) G-P(sol) polarization free energy of solvation -71.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds