Wall clock time and date at job start Tue Mar 31 2020 06:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.07998 * 120.00063 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00436 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47153 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.46778 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00077 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00077 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00344 * 180.02562 * 13 11 10 15 15 H 1.09003 * 109.24879 * 324.99495 * 14 13 11 16 16 C 1.50631 * 109.25534 * 84.46100 * 14 13 11 17 17 C 1.38912 * 117.75059 * 282.79399 * 16 14 13 18 18 C 1.37935 * 120.54748 * 179.80117 * 17 16 14 19 19 C 1.38254 * 119.77217 * 359.95619 * 18 17 16 20 20 C 1.37939 * 119.77136 * 0.10672 * 19 18 17 21 21 C 1.37656 * 122.56910 * 102.74456 * 16 14 13 22 22 C 1.50638 * 122.57386 * 0.45002 * 21 16 14 23 23 C 1.52739 * 110.57174 * 342.35937 * 22 21 16 24 24 C 1.52732 * 109.25284 * 205.53337 * 14 13 11 25 25 H 1.08996 * 109.68522 * 171.01305 * 24 14 13 26 26 O 1.42904 * 109.68220 * 50.46271 * 24 14 13 27 27 H 0.96999 * 120.00235 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46762 * 299.99954 * 9 7 2 29 29 H 1.09001 * 109.46863 * 60.00053 * 9 7 2 30 30 H 1.08991 * 109.47217 * 299.99935 * 10 9 7 31 31 H 1.09001 * 109.46939 * 60.00411 * 10 9 7 32 32 H 0.97004 * 119.99647 * 359.97438 * 13 11 10 33 33 H 1.08003 * 119.72926 * 359.77659 * 17 16 14 34 34 H 1.08004 * 120.11169 * 179.97438 * 18 17 16 35 35 H 1.08005 * 120.11695 * 180.08514 * 19 18 17 36 36 H 1.07999 * 119.72726 * 180.02562 * 20 19 18 37 37 H 1.08995 * 109.25625 * 102.64230 * 22 21 16 38 38 H 1.08998 * 109.25763 * 222.07966 * 22 21 16 39 39 H 1.09001 * 109.68316 * 170.83346 * 23 22 21 40 40 H 1.08999 * 109.68444 * 291.35669 * 23 22 21 41 41 H 0.96698 * 113.99752 * 180.02562 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 1.4647 -2.1293 0.0104 9 6 3.5117 -1.1939 0.0050 10 6 4.0217 -2.6364 0.0126 11 6 5.5286 -2.6363 0.0113 12 8 6.1350 -1.5860 0.0046 13 7 6.2026 -3.8034 0.0167 14 6 7.6676 -3.8034 0.0161 15 1 8.0267 -2.9633 -0.5785 16 6 8.1649 -3.6593 1.4306 17 6 8.1214 -2.3957 2.0059 18 6 8.5584 -2.1988 3.2993 19 6 9.0431 -3.2675 4.0303 20 6 9.0884 -4.5229 3.4604 21 6 8.6512 -4.7226 2.1571 22 6 8.7361 -6.1177 1.5951 23 6 7.8445 -6.2549 0.3626 24 6 8.1710 -5.1075 -0.5993 25 1 9.2489 -5.0502 -0.7501 26 8 7.5205 -5.3311 -1.8519 27 1 -0.4850 0.8400 0.0004 28 1 3.8746 -0.6844 -0.8877 29 1 3.8753 -0.6757 0.8924 30 1 3.6588 -3.1454 0.9053 31 1 3.6581 -3.1550 -0.8746 32 1 5.7176 -4.6435 0.0217 33 1 7.7427 -1.5603 1.4357 34 1 8.5218 -1.2132 3.7395 35 1 9.3855 -3.1200 5.0440 36 1 9.4667 -5.3573 4.0323 37 1 9.7683 -6.3313 1.3177 38 1 8.4133 -6.8309 2.3535 39 1 8.0378 -7.2100 -0.1259 40 1 6.7971 -6.1995 0.6591 41 1 7.7943 -6.1445 -2.2975 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886711854.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:10 Heat of formation + Delta-G solvation = -77.002858 kcal Electronic energy + Delta-G solvation = -23062.482793 eV Core-core repulsion = 19713.299217 eV Total energy + Delta-G solvation = -3349.183577 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.75519 -38.75420 -37.70610 -34.82943 -33.97495 -33.41157 -31.66446 -30.85288 -29.86676 -28.27381 -25.92263 -23.73975 -22.74871 -22.21404 -21.45177 -19.80089 -19.21958 -17.72424 -17.27014 -16.58384 -16.08378 -15.82794 -15.50074 -14.99935 -14.80932 -14.42887 -14.34554 -14.00667 -13.59822 -13.33438 -13.15362 -13.03112 -12.52756 -12.48420 -12.36176 -12.05729 -11.74801 -11.40688 -11.35201 -11.13391 -10.91759 -10.64230 -10.21364 -10.09439 -9.97581 -9.75048 -9.28697 -9.13559 -8.82547 -8.77551 -8.66042 -8.46683 -5.99171 -3.97473 1.23184 1.34964 3.18403 3.40648 3.43114 3.47144 3.58437 3.77221 3.86364 4.30246 4.45060 4.54490 4.65602 4.78006 4.82716 4.91332 5.10026 5.16589 5.19900 5.32084 5.36500 5.43708 5.48623 5.60546 5.68559 5.73883 5.84429 5.97700 6.07375 6.16299 6.17720 6.40144 6.53644 6.58625 6.68802 6.77104 6.97895 7.36766 7.41717 7.49573 7.82090 7.88397 8.55001 8.73931 9.04371 9.64120 11.13800 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018892 B = 0.004285 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.741882 B = 6532.359519 C = 7399.589006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.261 1.261 6 H -0.289 1.289 7 C -0.523 4.523 8 H 0.072 0.928 9 C 0.003 3.997 10 C -0.121 4.121 11 C 0.515 3.485 12 O -0.542 6.542 13 N -0.721 5.721 14 C 0.195 3.805 15 H 0.098 0.902 16 C -0.093 4.093 17 C -0.094 4.094 18 C -0.127 4.127 19 C -0.114 4.114 20 C -0.131 4.131 21 C -0.074 4.074 22 C -0.077 4.077 23 C -0.153 4.153 24 C 0.100 3.900 25 H 0.070 0.930 26 O -0.555 6.555 27 H 0.263 0.737 28 H 0.024 0.976 29 H 0.018 0.982 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.399 0.601 33 H 0.142 0.858 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.822 -15.428 3.591 26.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.185 1.185 6 H -0.215 1.215 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.035 4.035 10 C -0.161 4.161 11 C 0.304 3.696 12 O -0.419 6.419 13 N -0.373 5.373 14 C 0.089 3.911 15 H 0.116 0.884 16 C -0.095 4.095 17 C -0.113 4.113 18 C -0.145 4.145 19 C -0.132 4.132 20 C -0.149 4.149 21 C -0.075 4.075 22 C -0.114 4.114 23 C -0.191 4.191 24 C 0.040 3.960 25 H 0.087 0.913 26 O -0.360 6.360 27 H 0.072 0.928 28 H 0.042 0.958 29 H 0.037 0.963 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.234 0.766 33 H 0.160 0.840 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 21.796 -13.971 3.715 26.155 hybrid contribution 0.392 -0.073 0.092 0.409 sum 22.188 -14.045 3.807 26.534 Atomic orbital electron populations 1.69914 1.06296 1.26907 1.51266 1.24964 0.94690 0.99192 0.94375 0.86797 0.80653 0.83419 0.78689 1.20291 1.18508 1.21488 1.21130 0.89358 0.94539 1.51112 0.90983 1.19355 0.96320 0.90229 0.97591 1.21651 0.88040 1.03205 1.03238 1.21496 0.91514 0.82795 0.73833 1.90569 1.70603 1.31518 1.49229 1.46075 1.05066 1.09390 1.76812 1.19510 0.82125 0.97612 0.91809 0.88367 1.19795 1.00456 0.93321 0.95905 1.21692 0.96477 0.97592 0.95490 1.21160 0.99463 0.99125 0.94725 1.21099 0.99500 0.93015 0.99632 1.21048 1.01689 0.97327 0.94793 1.19590 0.99112 0.94607 0.94149 1.20424 1.00238 0.93570 0.97196 1.22296 1.01334 0.98832 0.96589 1.21985 0.96145 0.94102 0.83756 0.91254 1.86609 1.68638 1.46894 1.33819 0.92769 0.95803 0.96344 0.89822 0.89602 0.76570 0.84031 0.85997 0.86224 0.86352 0.90450 0.90308 0.90690 0.90598 0.77472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.45 13.96 55.43 0.77 -27.68 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 22.95 27.46 -169.99 -4.67 18.28 16 4 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.26 -6.80 6.55 56.52 0.37 -6.43 16 6 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 7 C -0.52 -15.29 9.66 -34.44 -0.33 -15.62 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C 0.00 0.08 3.33 -27.88 -0.09 -0.02 16 10 C -0.12 -2.46 5.64 -27.88 -0.16 -2.62 16 11 C 0.51 9.70 7.58 -10.99 -0.08 9.62 16 12 O -0.54 -11.85 13.25 5.56 0.07 -11.78 16 13 N -0.72 -10.49 4.61 -55.10 -0.25 -10.75 16 14 C 0.19 2.55 2.26 -69.26 -0.16 2.39 16 15 H 0.10 1.50 7.55 -51.93 -0.39 1.11 16 16 C -0.09 -1.21 5.29 -104.62 -0.55 -1.77 16 17 C -0.09 -1.38 9.12 -39.44 -0.36 -1.74 16 18 C -0.13 -1.61 10.05 -39.69 -0.40 -2.01 16 19 C -0.11 -1.24 10.05 -39.68 -0.40 -1.64 16 20 C -0.13 -1.33 9.61 -39.44 -0.38 -1.71 16 21 C -0.07 -0.79 5.74 -104.61 -0.60 -1.39 16 22 C -0.08 -0.58 5.67 -28.05 -0.16 -0.74 16 23 C -0.15 -1.13 5.57 -26.74 -0.15 -1.28 16 24 C 0.10 0.93 3.19 -26.74 -0.09 0.84 16 25 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 26 O -0.55 -5.38 12.98 -35.23 -0.46 -5.84 16 27 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 28 H 0.02 0.63 7.17 -51.93 -0.37 0.26 16 29 H 0.02 0.48 7.52 -51.93 -0.39 0.09 16 30 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 31 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 32 H 0.40 4.98 7.31 -40.82 -0.30 4.68 16 33 H 0.14 2.42 5.84 -52.48 -0.31 2.11 16 34 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 35 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 36 H 0.12 0.91 8.05 -52.49 -0.42 0.49 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.52 8.13 -51.93 -0.42 0.09 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.64 6.77 -51.93 -0.35 0.29 16 41 H 0.38 1.86 9.09 45.56 0.41 2.27 16 LS Contribution 331.77 15.07 5.00 5.00 Total: -1.00 -35.31 331.77 -8.62 -43.94 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.08 Total: 4.53 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: -4.00 Total: -15.71 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.52 Total: -38.43 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -0.38 Total: -17.61 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -4.67 Total: 18.28 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.31 -8.62 -43.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886711854.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.067 kcal (2) G-P(sol) polarization free energy of solvation -35.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds