Wall clock time and date at job start Tue Mar 31 2020 06:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.07998 * 120.00063 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00436 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47153 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.46778 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00077 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00077 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00344 * 180.02562 * 13 11 10 15 15 H 1.09003 * 109.24879 * 324.99495 * 14 13 11 16 16 C 1.50631 * 109.25534 * 84.46100 * 14 13 11 17 17 C 1.38912 * 117.75059 * 282.79399 * 16 14 13 18 18 C 1.37935 * 120.54748 * 179.80117 * 17 16 14 19 19 C 1.38254 * 119.77217 * 359.95619 * 18 17 16 20 20 C 1.37939 * 119.77136 * 0.10672 * 19 18 17 21 21 C 1.37656 * 122.56910 * 102.74456 * 16 14 13 22 22 C 1.50638 * 122.57386 * 0.45002 * 21 16 14 23 23 C 1.52739 * 110.57174 * 342.35937 * 22 21 16 24 24 C 1.52732 * 109.25284 * 205.53337 * 14 13 11 25 25 H 1.08996 * 109.68522 * 171.01305 * 24 14 13 26 26 O 1.42904 * 109.68220 * 50.46271 * 24 14 13 27 27 H 0.96999 * 120.00235 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46762 * 299.99954 * 9 7 2 29 29 H 1.09001 * 109.46863 * 60.00053 * 9 7 2 30 30 H 1.08991 * 109.47217 * 299.99935 * 10 9 7 31 31 H 1.09001 * 109.46939 * 60.00411 * 10 9 7 32 32 H 0.97004 * 119.99647 * 359.97438 * 13 11 10 33 33 H 1.08003 * 119.72926 * 359.77659 * 17 16 14 34 34 H 1.08004 * 120.11169 * 179.97438 * 18 17 16 35 35 H 1.08005 * 120.11695 * 180.08514 * 19 18 17 36 36 H 1.07999 * 119.72726 * 180.02562 * 20 19 18 37 37 H 1.08995 * 109.25625 * 102.64230 * 22 21 16 38 38 H 1.08998 * 109.25763 * 222.07966 * 22 21 16 39 39 H 1.09001 * 109.68316 * 170.83346 * 23 22 21 40 40 H 1.08999 * 109.68444 * 291.35669 * 23 22 21 41 41 H 0.96698 * 113.99752 * 180.02562 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 1.4647 -2.1293 0.0104 9 6 3.5117 -1.1939 0.0050 10 6 4.0217 -2.6364 0.0126 11 6 5.5286 -2.6363 0.0113 12 8 6.1350 -1.5860 0.0046 13 7 6.2026 -3.8034 0.0167 14 6 7.6676 -3.8034 0.0161 15 1 8.0267 -2.9633 -0.5785 16 6 8.1649 -3.6593 1.4306 17 6 8.1214 -2.3957 2.0059 18 6 8.5584 -2.1988 3.2993 19 6 9.0431 -3.2675 4.0303 20 6 9.0884 -4.5229 3.4604 21 6 8.6512 -4.7226 2.1571 22 6 8.7361 -6.1177 1.5951 23 6 7.8445 -6.2549 0.3626 24 6 8.1710 -5.1075 -0.5993 25 1 9.2489 -5.0502 -0.7501 26 8 7.5205 -5.3311 -1.8519 27 1 -0.4850 0.8400 0.0004 28 1 3.8746 -0.6844 -0.8877 29 1 3.8753 -0.6757 0.8924 30 1 3.6588 -3.1454 0.9053 31 1 3.6581 -3.1550 -0.8746 32 1 5.7176 -4.6435 0.0217 33 1 7.7427 -1.5603 1.4357 34 1 8.5218 -1.2132 3.7395 35 1 9.3855 -3.1200 5.0440 36 1 9.4667 -5.3573 4.0323 37 1 9.7683 -6.3313 1.3177 38 1 8.4133 -6.8309 2.3535 39 1 8.0378 -7.2100 -0.1259 40 1 6.7971 -6.1995 0.6591 41 1 7.7943 -6.1445 -2.2975 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886711854.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:10 Heat of formation + Delta-G solvation = -102.700167 kcal Electronic energy + Delta-G solvation = -23063.597112 eV Core-core repulsion = 19713.299217 eV Total energy + Delta-G solvation = -3350.297896 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.74333 -40.07602 -38.53390 -35.80968 -35.52467 -34.89320 -33.44507 -32.21269 -30.64313 -29.33972 -27.73322 -24.59644 -23.58637 -23.40875 -22.90602 -21.37854 -20.15044 -19.26118 -18.49039 -17.80422 -17.38537 -16.99421 -16.48000 -16.33438 -16.19883 -15.78691 -15.19916 -15.10332 -14.94824 -14.67921 -14.55046 -14.19638 -13.83446 -13.74824 -13.41751 -13.19749 -13.07315 -12.89190 -12.38308 -12.27648 -12.15357 -11.97736 -11.87568 -11.79288 -11.42915 -11.36845 -10.91327 -10.79972 -10.76510 -10.07721 -9.73489 -9.55784 -8.33259 -6.36112 0.33252 0.44353 1.30935 1.32614 1.48347 1.69301 2.25817 2.33332 2.87709 3.02273 3.05731 3.59379 3.75807 3.88807 3.99285 4.07957 4.12794 4.17623 4.25591 4.37284 4.40846 4.46003 4.50704 4.60278 4.73747 4.81848 4.92853 4.97280 5.05782 5.10667 5.19425 5.30017 5.30575 5.42107 5.48708 5.55667 5.58981 5.62435 5.68659 6.09956 6.21981 6.58434 6.69658 6.92877 7.29169 7.32330 8.82591 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018892 B = 0.004285 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.741882 B = 6532.359519 C = 7399.589006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.016 3.984 3 Si 0.938 3.062 4 H -0.268 1.268 5 H -0.264 1.264 6 H -0.276 1.276 7 C -0.530 4.530 8 H 0.049 0.951 9 C 0.009 3.991 10 C -0.116 4.116 11 C 0.515 3.485 12 O -0.579 6.579 13 N -0.700 5.700 14 C 0.190 3.810 15 H 0.064 0.936 16 C -0.108 4.108 17 C -0.126 4.126 18 C -0.145 4.145 19 C -0.114 4.114 20 C -0.128 4.128 21 C -0.071 4.071 22 C -0.075 4.075 23 C -0.146 4.146 24 C 0.107 3.893 25 H 0.086 0.914 26 O -0.577 6.577 27 H 0.268 0.732 28 H 0.009 0.991 29 H 0.007 0.993 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.412 0.588 33 H 0.104 0.896 34 H 0.123 0.877 35 H 0.146 0.854 36 H 0.154 0.846 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.064 0.936 41 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.012 -18.130 4.434 30.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.182 4.182 3 Si 0.762 3.238 4 H -0.193 1.193 5 H -0.188 1.188 6 H -0.201 1.201 7 C -0.568 4.568 8 H 0.068 0.932 9 C -0.029 4.029 10 C -0.155 4.155 11 C 0.303 3.697 12 O -0.459 6.459 13 N -0.353 5.353 14 C 0.085 3.915 15 H 0.082 0.918 16 C -0.109 4.109 17 C -0.145 4.145 18 C -0.163 4.163 19 C -0.132 4.132 20 C -0.146 4.146 21 C -0.071 4.071 22 C -0.112 4.112 23 C -0.184 4.184 24 C 0.048 3.952 25 H 0.104 0.896 26 O -0.386 6.386 27 H 0.077 0.923 28 H 0.027 0.973 29 H 0.026 0.974 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.249 0.751 33 H 0.123 0.877 34 H 0.141 0.859 35 H 0.164 0.836 36 H 0.171 0.829 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.127 0.873 40 H 0.082 0.918 41 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 24.000 -16.737 4.550 29.611 hybrid contribution -0.278 0.686 -0.162 0.757 sum 23.723 -16.051 4.388 28.977 Atomic orbital electron populations 1.70018 1.07727 1.28122 1.52467 1.25773 0.95485 1.02745 0.94181 0.85836 0.79196 0.79573 0.79146 1.19343 1.18819 1.20096 1.21420 0.91180 0.93754 1.50429 0.93243 1.19183 0.93978 0.93525 0.96217 1.21472 0.89456 1.00013 1.04596 1.21159 0.90923 0.83541 0.74086 1.90571 1.71038 1.33076 1.51231 1.45839 1.06151 1.08463 1.74810 1.19645 0.80547 0.99002 0.92264 0.91752 1.19775 1.01772 0.93493 0.95896 1.21580 0.98729 0.97668 0.96498 1.21291 1.00306 1.00286 0.94371 1.21437 0.98440 0.92726 1.00592 1.21502 1.00401 0.97976 0.94697 1.20005 0.97301 0.95608 0.94218 1.20545 1.01710 0.91416 0.97530 1.22280 1.00659 0.99270 0.96196 1.21918 0.96584 0.92619 0.84088 0.89639 1.86555 1.69115 1.48717 1.34178 0.92314 0.97266 0.97440 0.88436 0.88312 0.75095 0.87742 0.85889 0.83599 0.82859 0.88073 0.88297 0.87336 0.91752 0.74907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.19 13.96 21.45 0.30 -59.89 16 2 C 0.02 0.97 5.47 84.65 0.46 1.43 16 3 Si 0.94 48.15 27.46 68.60 1.88 50.03 16 4 H -0.27 -13.31 7.11 99.48 0.71 -12.60 16 5 H -0.26 -13.58 6.55 99.48 0.65 -12.92 16 6 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 7 C -0.53 -31.66 9.66 25.60 0.25 -31.42 16 8 H 0.05 3.10 7.99 -2.91 -0.02 3.08 16 9 C 0.01 0.47 3.33 29.85 0.10 0.57 16 10 C -0.12 -4.74 5.64 29.85 0.17 -4.57 16 11 C 0.51 19.95 7.58 87.66 0.66 20.61 16 12 O -0.58 -26.72 13.25 -3.03 -0.04 -26.76 16 13 N -0.70 -20.38 4.61 -446.64 -2.06 -22.44 16 14 C 0.19 4.98 2.26 44.14 0.10 5.08 16 15 H 0.06 2.10 7.55 -2.39 -0.02 2.08 16 16 C -0.11 -2.78 5.29 -19.86 -0.11 -2.89 16 17 C -0.13 -3.91 9.12 22.36 0.20 -3.71 16 18 C -0.14 -3.75 10.05 22.20 0.22 -3.53 16 19 C -0.11 -2.24 10.05 22.20 0.22 -2.02 16 20 C -0.13 -2.17 9.61 22.36 0.21 -1.95 16 21 C -0.07 -1.32 5.74 -19.86 -0.11 -1.43 16 22 C -0.08 -0.78 5.67 29.74 0.17 -0.61 16 23 C -0.15 -1.57 5.57 30.59 0.17 -1.40 16 24 C 0.11 1.75 3.19 30.59 0.10 1.85 16 25 H 0.09 1.15 8.10 -2.39 -0.02 1.13 16 26 O -0.58 -9.93 12.98 -148.98 -1.93 -11.86 16 27 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 28 H 0.01 0.49 7.17 -2.39 -0.02 0.48 16 29 H 0.01 0.39 7.52 -2.39 -0.02 0.37 16 30 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 31 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 32 H 0.41 9.80 7.31 -92.71 -0.68 9.12 16 33 H 0.10 3.97 5.84 -2.91 -0.02 3.95 16 34 H 0.12 2.96 8.06 -2.91 -0.02 2.94 16 35 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 36 H 0.15 1.54 8.05 -2.91 -0.02 1.51 16 37 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.10 0.72 8.13 -2.39 -0.02 0.70 16 39 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.06 0.87 6.77 -2.39 -0.02 0.85 16 41 H 0.40 2.68 9.09 -74.06 -0.67 2.00 16 Total: -1.00 -79.87 331.77 0.62 -79.25 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -0.35 Total: 15.66 kcal Atomic # 6 Polarization: -26.82 SS G_CDS: 2.82 Total: -23.99 kcal Atomic # 7 Polarization: -80.57 SS G_CDS: -1.76 Total: -82.33 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: -1.97 Total: -38.62 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 1.88 Total: 50.03 kcal Total: -79.87 0.62 -79.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886711854.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.453 kcal (2) G-P(sol) polarization free energy of solvation -79.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds