Wall clock time and date at job start Tue Mar 31 2020 06:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46497 * 2 1 4 4 C 1.50699 * 109.47215 * 240.00444 * 2 1 3 5 5 H 1.07998 * 120.00018 * 240.00250 * 4 2 1 6 6 C 1.37886 * 119.99952 * 59.99601 * 4 2 1 7 7 N 1.31510 * 119.99753 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99991 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47117 * 89.99949 * 8 6 4 10 10 H 1.48502 * 109.47324 * 210.00274 * 8 6 4 11 11 H 1.48501 * 109.47134 * 330.00579 * 8 6 4 12 12 N 1.46493 * 109.47115 * 120.00068 * 2 1 3 13 13 C 1.46509 * 120.00071 * 60.00498 * 12 2 1 14 14 C 1.34774 * 120.00383 * 239.99830 * 12 2 1 15 15 O 1.21600 * 119.99575 * 0.02562 * 14 12 2 16 16 N 1.34773 * 120.00361 * 180.02562 * 14 12 2 17 17 C 1.40336 * 120.00004 * 184.63984 * 16 14 12 18 18 C 1.40733 * 120.34447 * 324.98987 * 17 16 14 19 19 N 1.31168 * 120.22053 * 180.02562 * 18 17 16 20 20 C 1.33957 * 120.92637 * 0.02562 * 19 18 17 21 21 C 1.38983 * 132.46805 * 180.02562 * 20 19 18 22 22 C 1.38594 * 107.64526 * 180.02562 * 21 20 19 23 23 N 1.31471 * 108.98307 * 359.97438 * 22 21 20 24 24 N 1.37077 * 120.65475 * 0.02562 * 20 19 18 25 25 C 1.36045 * 120.34563 * 145.01716 * 17 16 14 26 26 H 1.09004 * 109.47069 * 299.99586 * 1 2 3 27 27 H 1.08994 * 109.47325 * 59.99655 * 1 2 3 28 28 H 1.08999 * 109.46708 * 179.97438 * 1 2 3 29 29 H 0.97001 * 119.99520 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.46735 * 270.00048 * 13 12 2 31 31 H 1.09001 * 109.46793 * 29.99237 * 13 12 2 32 32 H 1.08999 * 109.46917 * 149.99518 * 13 12 2 33 33 H 0.96997 * 120.00157 * 4.63509 * 16 14 12 34 34 H 1.08001 * 119.89250 * 0.02562 * 18 17 16 35 35 H 1.08000 * 126.18013 * 359.96513 * 21 20 19 36 36 H 1.08002 * 125.50979 * 180.02562 * 22 21 20 37 37 H 1.07999 * 120.48001 * 359.69539 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6033 8 14 2.3213 -1.1200 -4.0080 9 1 1.3428 -2.1614 -4.4120 10 1 2.4865 -0.1410 -5.1123 11 1 3.6293 -1.7581 -3.7123 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0933 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.0866 1.1286 1.8911 16 7 3.2429 -0.6712 3.1834 17 6 3.9676 0.0358 4.1552 18 6 4.8417 1.0717 3.7764 19 7 5.5182 1.7306 4.6867 20 6 5.3930 1.4335 5.9869 21 6 5.9788 1.9622 7.1310 22 6 5.4794 1.2646 8.2195 23 7 4.6325 0.3544 7.7920 24 7 4.5530 0.4309 6.3970 25 6 3.8329 -0.2734 5.4732 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7089 1.1615 -3.4843 30 1 0.7376 -2.1445 1.9992 31 1 1.5296 -2.5969 0.4706 32 1 2.4630 -2.5819 1.9862 33 1 3.0656 -1.6172 3.3036 34 1 4.9559 1.3250 2.7328 35 1 6.6947 2.7701 7.1656 36 1 5.7426 1.4409 9.2520 37 1 3.1641 -1.0618 5.7853 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888918360.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:15 Heat of formation + Delta-G solvation = 111.160941 kcal Electronic energy + Delta-G solvation = -22419.324003 eV Core-core repulsion = 19007.052228 eV Total energy + Delta-G solvation = -3412.271774 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.33798 -40.20792 -38.01598 -35.75606 -34.99623 -33.61632 -32.85522 -30.26779 -29.39156 -28.40667 -26.36536 -25.31655 -24.86376 -23.54251 -21.74818 -21.27618 -19.76288 -18.53311 -17.77820 -17.42373 -16.58580 -16.31535 -15.95544 -15.52747 -15.07282 -14.85866 -14.27462 -14.22085 -13.55286 -13.34668 -13.13306 -13.06493 -12.66943 -12.50281 -11.82549 -11.68232 -11.57316 -11.32866 -11.15717 -10.92336 -10.80521 -10.46087 -10.36065 -10.25710 -9.89624 -9.66390 -9.27570 -8.85804 -8.52623 -7.92511 -7.68446 -6.16465 -4.25216 0.47030 0.84219 1.87104 2.53272 2.88696 3.20780 3.28768 3.29946 3.31897 3.61567 3.91613 4.04539 4.15481 4.30685 4.38198 4.86730 5.09904 5.15495 5.27171 5.40355 5.42704 5.75786 5.80403 6.01485 6.11459 6.12852 6.38943 6.49279 6.58979 6.68384 6.84483 6.98007 7.27562 7.35718 7.53930 7.60893 7.64370 7.92849 8.07986 8.38976 8.72670 8.92174 9.41714 10.88857 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.035767 B = 0.003401 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.654166 B = 8231.396287 C = 8475.898331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.272 3.728 3 H 0.067 0.933 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.596 5.596 13 C 0.081 3.919 14 C 0.699 3.301 15 O -0.577 6.577 16 N -0.682 5.682 17 C 0.098 3.902 18 C 0.199 3.801 19 N -0.452 5.452 20 C 0.247 3.753 21 C -0.270 4.270 22 C 0.081 3.919 23 N -0.321 5.321 24 N -0.295 5.295 25 C 0.099 3.901 26 H 0.012 0.988 27 H 0.095 0.905 28 H 0.030 0.970 29 H 0.265 0.735 30 H 0.047 0.953 31 H 0.089 0.911 32 H 0.047 0.953 33 H 0.408 0.592 34 H 0.200 0.800 35 H 0.160 0.840 36 H 0.195 0.805 37 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.667 -4.905 15.136 16.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.172 3.828 3 H 0.085 0.915 4 C -0.569 4.569 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.523 5.523 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.330 5.330 13 C -0.063 4.063 14 C 0.401 3.599 15 O -0.454 6.454 16 N -0.334 5.334 17 C -0.005 4.005 18 C 0.013 3.987 19 N -0.163 5.163 20 C 0.018 3.982 21 C -0.301 4.301 22 C -0.096 4.096 23 N -0.147 5.147 24 N -0.065 5.065 25 C -0.040 4.040 26 H 0.031 0.969 27 H 0.114 0.886 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.107 0.893 32 H 0.066 0.934 33 H 0.246 0.754 34 H 0.216 0.784 35 H 0.177 0.823 36 H 0.212 0.788 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 4.551 -4.167 15.152 16.360 hybrid contribution 0.052 -1.136 -0.828 1.407 sum 4.603 -5.304 14.324 15.953 Atomic orbital electron populations 1.22115 0.98003 0.99517 1.00990 1.18983 0.90808 0.94389 0.78620 0.91487 1.21296 1.32218 1.13236 0.90180 0.92142 1.24882 0.94855 0.94924 0.98994 1.69870 1.36082 1.22400 1.23972 0.86472 0.79170 0.79292 0.82323 1.20613 1.21039 1.19898 1.47660 1.50108 1.11672 1.23525 1.21617 0.98472 0.83199 1.03033 1.15937 0.79736 0.84907 0.79348 1.90884 1.62635 1.15399 1.76517 1.42773 1.57610 1.12656 1.20407 1.17748 0.96984 0.98405 0.87338 1.24103 0.85734 0.87841 1.01047 1.68408 1.23569 1.26577 0.97739 1.20925 0.94047 0.90855 0.92372 1.20913 1.11768 1.09405 0.88000 1.23743 0.93231 0.92303 1.00305 1.77871 1.26594 1.26530 0.83671 1.46864 1.28837 1.23801 1.07036 1.21300 0.97153 0.99985 0.85527 0.96918 0.88616 0.95081 0.92529 0.93475 0.89282 0.93412 0.75353 0.78369 0.82263 0.78796 0.80505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 8.97 37.16 0.33 -2.98 16 2 C 0.27 6.43 2.64 -69.08 -0.18 6.25 16 3 H 0.07 1.86 6.90 -51.93 -0.36 1.50 16 4 C -0.53 -13.39 7.99 -34.44 -0.28 -13.66 16 5 H 0.06 1.49 7.33 -52.49 -0.38 1.10 16 6 C 0.07 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -23.98 11.32 55.43 0.63 -23.36 16 8 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 12 N -0.60 -11.32 2.75 -181.00 -0.50 -11.82 16 13 C 0.08 1.14 9.24 59.85 0.55 1.69 16 14 C 0.70 12.88 8.14 -86.92 -0.71 12.17 16 15 O -0.58 -12.76 13.13 5.28 0.07 -12.69 16 16 N -0.68 -9.10 5.23 -14.33 -0.07 -9.18 16 17 C 0.10 1.34 6.28 -83.81 -0.53 0.81 16 18 C 0.20 3.09 9.94 -16.89 -0.17 2.92 16 19 N -0.45 -7.21 10.47 -12.09 -0.13 -7.34 16 20 C 0.25 3.72 7.92 -155.57 -1.23 2.49 16 21 C -0.27 -3.38 10.91 -39.17 -0.43 -3.81 16 22 C 0.08 0.89 11.94 -17.57 -0.21 0.68 16 23 N -0.32 -4.34 12.66 30.47 0.39 -3.96 16 24 N -0.29 -4.18 3.90 -12.04 -0.05 -4.22 16 25 C 0.10 1.21 11.22 -16.18 -0.18 1.02 16 26 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.10 2.39 6.07 -51.93 -0.32 2.07 16 28 H 0.03 0.63 7.67 -51.93 -0.40 0.24 16 29 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 1.37 7.02 -51.93 -0.36 1.01 16 32 H 0.05 0.50 6.30 -51.93 -0.33 0.17 16 33 H 0.41 4.02 6.52 -40.82 -0.27 3.75 16 34 H 0.20 3.29 6.28 -52.49 -0.33 2.96 16 35 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.20 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.18 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 313.67 15.07 4.73 4.73 Total: -1.00 -31.42 313.67 -7.07 -38.49 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -3.99 Total: 5.05 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: -3.12 Total: 9.22 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: 0.27 Total: -59.87 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.07 Total: -12.69 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.42 -7.07 -38.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888918360.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.648 kcal (2) G-P(sol) polarization free energy of solvation -31.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds