Wall clock time and date at job start Tue Mar 31 2020 06:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46497 * 2 1 4 4 C 1.50699 * 109.47215 * 240.00444 * 2 1 3 5 5 H 1.07998 * 120.00018 * 240.00250 * 4 2 1 6 6 C 1.37886 * 119.99952 * 59.99601 * 4 2 1 7 7 N 1.31510 * 119.99753 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99991 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47117 * 89.99949 * 8 6 4 10 10 H 1.48502 * 109.47324 * 210.00274 * 8 6 4 11 11 H 1.48501 * 109.47134 * 330.00579 * 8 6 4 12 12 N 1.46493 * 109.47115 * 120.00068 * 2 1 3 13 13 C 1.46509 * 120.00071 * 60.00498 * 12 2 1 14 14 C 1.34774 * 120.00383 * 239.99830 * 12 2 1 15 15 O 1.21600 * 119.99575 * 0.02562 * 14 12 2 16 16 N 1.34773 * 120.00361 * 180.02562 * 14 12 2 17 17 C 1.40336 * 120.00004 * 184.63984 * 16 14 12 18 18 C 1.40733 * 120.34447 * 324.98987 * 17 16 14 19 19 N 1.31168 * 120.22053 * 180.02562 * 18 17 16 20 20 C 1.33957 * 120.92637 * 0.02562 * 19 18 17 21 21 C 1.38983 * 132.46805 * 180.02562 * 20 19 18 22 22 C 1.38594 * 107.64526 * 180.02562 * 21 20 19 23 23 N 1.31471 * 108.98307 * 359.97438 * 22 21 20 24 24 N 1.37077 * 120.65475 * 0.02562 * 20 19 18 25 25 C 1.36045 * 120.34563 * 145.01716 * 17 16 14 26 26 H 1.09004 * 109.47069 * 299.99586 * 1 2 3 27 27 H 1.08994 * 109.47325 * 59.99655 * 1 2 3 28 28 H 1.08999 * 109.46708 * 179.97438 * 1 2 3 29 29 H 0.97001 * 119.99520 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.46735 * 270.00048 * 13 12 2 31 31 H 1.09001 * 109.46793 * 29.99237 * 13 12 2 32 32 H 1.08999 * 109.46917 * 149.99518 * 13 12 2 33 33 H 0.96997 * 120.00157 * 4.63509 * 16 14 12 34 34 H 1.08001 * 119.89250 * 0.02562 * 18 17 16 35 35 H 1.08000 * 126.18013 * 359.96513 * 21 20 19 36 36 H 1.08002 * 125.50979 * 180.02562 * 22 21 20 37 37 H 1.07999 * 120.48001 * 359.69539 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6033 8 14 2.3213 -1.1200 -4.0080 9 1 1.3428 -2.1614 -4.4120 10 1 2.4865 -0.1410 -5.1123 11 1 3.6293 -1.7581 -3.7123 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0933 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.0866 1.1286 1.8911 16 7 3.2429 -0.6712 3.1834 17 6 3.9676 0.0358 4.1552 18 6 4.8417 1.0717 3.7764 19 7 5.5182 1.7306 4.6867 20 6 5.3930 1.4335 5.9869 21 6 5.9788 1.9622 7.1310 22 6 5.4794 1.2646 8.2195 23 7 4.6325 0.3544 7.7920 24 7 4.5530 0.4309 6.3970 25 6 3.8329 -0.2734 5.4732 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7089 1.1615 -3.4843 30 1 0.7376 -2.1445 1.9992 31 1 1.5296 -2.5969 0.4706 32 1 2.4630 -2.5819 1.9862 33 1 3.0656 -1.6172 3.3036 34 1 4.9559 1.3250 2.7328 35 1 6.6947 2.7701 7.1656 36 1 5.7426 1.4409 9.2520 37 1 3.1641 -1.0618 5.7853 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888918360.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:15 Heat of formation + Delta-G solvation = 90.556621 kcal Electronic energy + Delta-G solvation = -22420.217473 eV Core-core repulsion = 19007.052228 eV Total energy + Delta-G solvation = -3413.165245 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.36908 -41.53815 -39.17352 -37.28859 -36.28561 -34.91242 -34.43282 -31.69931 -30.68689 -29.55994 -27.63791 -27.26633 -25.94247 -24.72787 -23.10785 -22.39719 -21.13919 -19.81378 -18.95068 -18.69464 -18.25141 -17.58013 -17.05793 -17.01222 -16.40328 -16.30250 -15.78112 -15.13317 -14.91512 -14.60352 -14.50021 -14.16365 -14.09755 -13.66317 -13.51666 -13.10202 -12.88429 -12.75670 -12.67281 -12.59027 -12.32838 -12.17882 -12.10559 -11.53511 -11.25979 -11.11475 -10.94053 -10.49784 -10.00552 -9.36809 -8.77803 -8.12134 -6.28074 -0.57391 -0.23792 0.83712 1.44205 1.46302 1.54877 1.59531 1.70308 2.04090 2.38412 2.44555 2.85135 2.89688 3.16815 3.19099 3.31099 3.86146 4.13925 4.31182 4.37201 4.47996 4.71916 4.75143 4.82594 4.92101 4.97581 5.02798 5.04797 5.08759 5.39690 5.42429 5.52514 5.59010 5.67294 5.92637 6.14733 6.19870 6.38478 6.51304 6.79594 6.98729 7.37032 7.53319 8.92026 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.035767 B = 0.003401 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.654166 B = 8231.396287 C = 8475.898331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.278 3.722 3 H 0.015 0.985 4 C -0.537 4.537 5 H 0.065 0.935 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.963 3.037 9 H -0.269 1.269 10 H -0.290 1.290 11 H -0.270 1.270 12 N -0.604 5.604 13 C 0.075 3.925 14 C 0.697 3.303 15 O -0.623 6.623 16 N -0.656 5.656 17 C 0.080 3.920 18 C 0.187 3.813 19 N -0.475 5.475 20 C 0.216 3.784 21 C -0.272 4.272 22 C 0.096 3.904 23 N -0.334 5.334 24 N -0.308 5.308 25 C 0.126 3.874 26 H 0.019 0.981 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.264 0.736 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.428 0.572 34 H 0.178 0.822 35 H 0.177 0.823 36 H 0.242 0.758 37 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.921 -7.152 17.491 19.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.176 3.824 3 H 0.033 0.967 4 C -0.575 4.575 5 H 0.083 0.917 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.788 3.212 9 H -0.194 1.194 10 H -0.216 1.216 11 H -0.194 1.194 12 N -0.338 5.338 13 C -0.067 4.067 14 C 0.398 3.602 15 O -0.504 6.504 16 N -0.310 5.310 17 C -0.022 4.022 18 C 0.000 4.000 19 N -0.187 5.187 20 C -0.012 4.012 21 C -0.302 4.302 22 C -0.080 4.080 23 N -0.160 5.160 24 N -0.079 5.079 25 C -0.012 4.012 26 H 0.038 0.962 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.270 0.730 34 H 0.194 0.806 35 H 0.195 0.805 36 H 0.258 0.742 37 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 4.814 -6.482 17.555 19.323 hybrid contribution 0.047 -0.383 -1.359 1.413 sum 4.862 -6.865 16.196 18.250 Atomic orbital electron populations 1.21899 0.97139 1.00249 0.99943 1.18501 0.91366 0.92179 0.80347 0.96717 1.21597 1.31851 1.13166 0.90933 0.91677 1.25687 0.95125 0.95584 1.01935 1.70019 1.37359 1.23837 1.24398 0.85486 0.78870 0.78190 0.78630 1.19421 1.21563 1.19447 1.47451 1.50342 1.13500 1.22464 1.21901 1.01205 0.80253 1.03385 1.16031 0.79475 0.84408 0.80245 1.90864 1.64071 1.17713 1.77720 1.42211 1.56728 1.13221 1.18845 1.17542 0.97712 0.98927 0.88023 1.23840 0.86832 0.89002 1.00279 1.68324 1.24418 1.27408 0.98538 1.21327 0.95341 0.92068 0.92496 1.21367 1.11566 1.09622 0.87686 1.24514 0.91248 0.90364 1.01902 1.77861 1.27471 1.27514 0.83143 1.47098 1.29197 1.24020 1.07557 1.21765 0.95673 0.99206 0.84554 0.96160 0.91423 0.93260 0.92705 0.91167 0.90558 0.89296 0.72983 0.80553 0.80547 0.74249 0.76550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.08 8.97 71.98 0.65 -5.43 16 2 C 0.28 13.52 2.64 44.25 0.12 13.64 16 3 H 0.01 0.87 6.90 -2.39 -0.02 0.86 16 4 C -0.54 -27.42 7.99 25.60 0.20 -27.22 16 5 H 0.07 3.19 7.33 -2.91 -0.02 3.16 16 6 C 0.02 0.86 5.30 84.66 0.45 1.31 16 7 N -0.92 -51.23 11.32 21.45 0.24 -50.99 16 8 Si 0.96 41.45 29.54 68.60 2.03 43.48 16 9 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 10 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 12 N -0.60 -22.77 2.75 -844.81 -2.33 -25.10 16 13 C 0.07 1.92 9.24 127.77 1.18 3.10 16 14 C 0.70 25.85 8.14 179.06 1.46 27.31 16 15 O -0.62 -29.01 13.13 -4.03 -0.05 -29.06 16 16 N -0.66 -16.57 5.23 -317.50 -1.66 -18.23 16 17 C 0.08 2.12 6.28 37.88 0.24 2.36 16 18 C 0.19 6.02 9.94 85.40 0.85 6.86 16 19 N -0.48 -15.54 10.47 -192.17 -2.01 -17.55 16 20 C 0.22 6.31 7.92 133.20 1.05 7.37 16 21 C -0.27 -6.23 10.91 22.53 0.25 -5.99 16 22 C 0.10 1.79 11.94 84.83 1.01 2.80 16 23 N -0.33 -8.02 12.66 -57.52 -0.73 -8.75 16 24 N -0.31 -8.10 3.90 -192.00 -0.75 -8.85 16 25 C 0.13 2.78 11.22 83.43 0.94 3.71 16 26 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.07 3.48 6.07 -2.39 -0.01 3.46 16 28 H 0.05 2.00 7.67 -2.39 -0.02 1.98 16 29 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.08 2.19 7.02 -2.39 -0.02 2.18 16 32 H 0.09 1.52 6.30 -2.39 -0.02 1.50 16 33 H 0.43 7.05 6.52 -92.71 -0.60 6.45 16 34 H 0.18 6.39 6.28 -2.91 -0.02 6.37 16 35 H 0.18 3.28 8.06 -2.91 -0.02 3.25 16 36 H 0.24 1.92 8.06 -2.91 -0.02 1.90 16 37 H 0.22 2.85 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -72.18 313.67 3.65 -68.53 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.52 Total: 16.69 kcal Atomic # 6 Polarization: 21.44 SS G_CDS: 8.39 Total: 29.83 kcal Atomic # 7 Polarization: -122.23 SS G_CDS: -7.23 Total: -129.46 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.05 Total: -29.06 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -72.18 3.65 -68.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888918360.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.087 kcal (2) G-P(sol) polarization free energy of solvation -72.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds