Wall clock time and date at job start Tue Mar 31 2020 05:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47273 * 2 1 4 4 H 1.09005 * 109.46844 * 304.99983 * 3 2 1 5 5 C 1.50699 * 109.47053 * 185.00054 * 3 2 1 6 6 H 1.07997 * 120.00193 * 239.99576 * 5 3 2 7 7 C 1.37879 * 120.00152 * 59.99952 * 5 3 2 8 8 N 1.31520 * 120.00020 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00142 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47443 * 60.00091 * 9 7 5 11 11 H 1.48500 * 109.47036 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46972 * 299.99805 * 9 7 5 13 13 N 1.46493 * 109.46908 * 64.99938 * 3 2 1 14 14 C 1.34774 * 120.00383 * 274.99816 * 13 3 2 15 15 O 1.21600 * 119.99575 * 0.02562 * 14 13 3 16 16 N 1.34773 * 120.00361 * 180.02562 * 14 13 3 17 17 C 1.40333 * 120.00294 * 184.67331 * 16 14 13 18 18 C 1.40749 * 120.34200 * 324.99083 * 17 16 14 19 19 N 1.31160 * 120.21998 * 180.02562 * 18 17 16 20 20 C 1.33964 * 120.92720 * 0.02562 * 19 18 17 21 21 C 1.38982 * 132.46629 * 180.02562 * 20 19 18 22 22 C 1.38602 * 107.64160 * 179.97438 * 21 20 19 23 23 N 1.31464 * 108.98580 * 359.97438 * 22 21 20 24 24 N 1.37079 * 120.65270 * 359.97438 * 20 19 18 25 25 C 1.36048 * 120.35136 * 145.01285 * 17 16 14 26 26 H 1.09004 * 109.47307 * 59.99782 * 1 2 3 27 27 H 1.08996 * 109.47345 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47476 * 299.99894 * 1 2 3 29 29 H 1.09008 * 109.47281 * 239.99590 * 2 1 3 30 30 H 1.09004 * 109.47307 * 120.00218 * 2 1 3 31 31 H 0.96998 * 120.00259 * 180.02562 * 8 7 5 32 32 H 0.97001 * 120.00028 * 95.00331 * 13 3 2 33 33 H 0.97001 * 120.00294 * 4.66904 * 16 14 13 34 34 H 1.08000 * 119.89136 * 0.02562 * 18 17 16 35 35 H 1.07995 * 126.18182 * 359.96644 * 21 20 19 36 36 H 1.07999 * 125.50710 * 180.02562 * 22 21 20 37 37 H 1.07994 * 120.47294 * 359.70454 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6522 7 6 4.1433 0.8783 -1.2280 8 7 3.4061 0.3374 -2.1734 9 14 6.0049 0.8811 -1.3818 10 1 6.5975 0.1472 -0.2350 11 1 6.3976 0.2176 -2.6510 12 1 6.4994 2.2814 -1.3823 13 7 1.6524 2.0974 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3416 2.6319 0.4319 16 7 0.0788 3.2674 2.5184 17 6 -1.2218 3.7712 2.6734 18 6 -1.9023 4.3323 1.5766 19 7 -3.1176 4.8029 1.7243 20 6 -3.7326 4.7604 2.9137 21 6 -4.9890 5.1785 3.3359 22 6 -5.0981 4.8838 4.6858 23 7 -3.9838 4.3158 5.0910 24 7 -3.1042 4.2220 4.0065 25 6 -1.8378 3.7227 3.8854 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8292 -0.0611 -2.9500 32 1 2.2719 2.1231 1.9977 33 1 0.7213 3.3531 3.2401 34 1 -1.4222 4.3755 0.6102 35 1 -5.7439 5.6483 2.7230 36 1 -5.9595 5.0870 5.3046 37 1 -1.3348 3.2923 4.7387 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888920995.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:21 Heat of formation + Delta-G solvation = 96.466018 kcal Electronic energy + Delta-G solvation = -22384.326048 eV Core-core repulsion = 18971.417054 eV Total energy + Delta-G solvation = -3412.908994 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.34925 -40.14641 -38.00981 -35.67563 -34.76550 -33.55211 -32.55039 -31.10407 -29.85636 -28.71384 -26.93729 -24.87716 -23.68737 -22.89170 -21.63378 -20.96536 -19.75829 -19.01241 -18.02880 -17.59658 -16.74449 -16.18718 -15.87559 -15.50077 -14.99871 -14.96311 -14.33779 -14.23525 -13.56861 -13.53235 -13.11447 -12.86563 -12.75078 -12.31626 -11.72463 -11.51435 -11.35203 -11.33569 -11.07833 -10.90964 -10.45109 -10.43075 -10.28155 -9.92266 -9.76954 -9.62672 -9.16606 -8.84519 -8.60547 -8.07920 -7.75321 -6.21402 -4.31680 0.45752 0.82906 1.86008 2.52194 2.89025 3.19678 3.26139 3.26755 3.30296 3.62617 3.89936 4.06513 4.19991 4.27304 4.67386 4.88527 5.10354 5.15992 5.26119 5.41221 5.74619 5.99045 6.10394 6.31826 6.37226 6.37789 6.54573 6.57033 6.76385 6.97823 7.18338 7.21003 7.29699 7.34485 7.53901 7.58612 7.71883 7.81475 8.07528 8.54089 8.67962 8.99140 9.35864 10.83792 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.041127 B = 0.003247 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.659405 B = 8622.571182 C = 8774.551199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.286 3.714 4 H 0.053 0.947 5 C -0.538 4.538 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.711 5.711 14 C 0.695 3.305 15 O -0.574 6.574 16 N -0.683 5.683 17 C 0.099 3.901 18 C 0.199 3.801 19 N -0.452 5.452 20 C 0.247 3.753 21 C -0.270 4.270 22 C 0.081 3.919 23 N -0.321 5.321 24 N -0.295 5.295 25 C 0.099 3.901 26 H 0.051 0.949 27 H 0.022 0.978 28 H 0.036 0.964 29 H 0.101 0.899 30 H 0.031 0.969 31 H 0.266 0.734 32 H 0.388 0.612 33 H 0.408 0.592 34 H 0.200 0.800 35 H 0.160 0.840 36 H 0.195 0.805 37 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.730 6.667 12.010 16.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.168 4.168 3 C 0.185 3.815 4 H 0.071 0.929 5 C -0.577 4.577 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.730 3.270 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.361 5.361 14 C 0.395 3.605 15 O -0.452 6.452 16 N -0.334 5.334 17 C -0.004 4.004 18 C 0.013 3.987 19 N -0.163 5.163 20 C 0.018 3.982 21 C -0.301 4.301 22 C -0.096 4.096 23 N -0.146 5.146 24 N -0.065 5.065 25 C -0.040 4.040 26 H 0.070 0.930 27 H 0.041 0.959 28 H 0.055 0.945 29 H 0.119 0.881 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.221 0.779 33 H 0.244 0.756 34 H 0.216 0.784 35 H 0.177 0.823 36 H 0.212 0.788 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -9.417 6.363 11.354 16.065 hybrid contribution 1.685 -0.115 0.688 1.824 sum -7.731 6.248 12.042 15.614 Atomic orbital electron populations 1.21822 0.98246 0.98093 1.01195 1.21973 0.92670 0.99760 1.02410 1.18801 0.94174 0.88953 0.79605 0.92913 1.21151 0.90472 1.39566 1.06483 0.92066 1.24869 0.98686 0.94677 0.95309 1.69875 1.35336 1.37203 1.09305 0.86494 0.84651 0.78350 0.77524 1.20165 1.21082 1.20154 1.45867 1.12880 1.57763 1.19583 1.16069 0.83964 0.78638 0.81781 1.90907 1.51825 1.64597 1.37827 1.42660 1.10018 1.61636 1.19121 1.17724 0.88290 1.00807 0.93573 1.24088 0.88552 0.86195 0.99903 1.68402 1.09834 1.18945 1.19152 1.20917 0.95272 0.98434 0.83593 1.20916 0.96398 1.16882 0.95892 1.23746 0.96210 0.94813 0.94812 1.77876 1.01712 1.29321 1.05726 1.46865 1.10813 1.38948 1.09912 1.21321 0.83169 0.99656 0.99844 0.92986 0.95879 0.94499 0.88109 0.95002 0.92349 0.77931 0.75605 0.78393 0.82269 0.78797 0.80502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.51 37.15 0.32 -2.57 16 2 C -0.13 -2.94 5.45 -26.73 -0.15 -3.08 16 3 C 0.29 6.57 2.24 -69.08 -0.15 6.41 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 5 C -0.54 -13.18 8.73 -34.44 -0.30 -13.48 16 6 H 0.06 1.42 7.74 -52.49 -0.41 1.02 16 7 C 0.07 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.88 -23.48 11.30 55.43 0.63 -22.85 16 9 Si 0.90 19.62 29.54 -169.99 -5.02 14.60 16 10 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 11 H -0.29 -6.25 7.11 56.52 0.40 -5.84 16 12 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 13 N -0.71 -12.71 5.03 -59.81 -0.30 -13.01 16 14 C 0.70 11.75 6.99 -86.92 -0.61 11.14 16 15 O -0.57 -11.62 10.93 5.28 0.06 -11.56 16 16 N -0.68 -8.31 5.36 -14.32 -0.08 -8.39 16 17 C 0.10 1.28 6.28 -83.80 -0.53 0.75 16 18 C 0.20 2.94 9.94 -16.89 -0.17 2.77 16 19 N -0.45 -7.00 10.47 -12.09 -0.13 -7.13 16 20 C 0.25 3.64 7.92 -155.56 -1.23 2.41 16 21 C -0.27 -3.32 10.92 -39.17 -0.43 -3.75 16 22 C 0.08 0.88 11.94 -17.57 -0.21 0.67 16 23 N -0.32 -4.29 12.66 30.47 0.39 -3.91 16 24 N -0.29 -4.10 3.90 -12.04 -0.05 -4.15 16 25 C 0.10 1.17 11.22 -16.19 -0.18 0.98 16 26 H 0.05 1.17 7.84 -51.93 -0.41 0.77 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.04 0.76 5.64 -51.93 -0.29 0.46 16 29 H 0.10 2.57 5.95 -51.92 -0.31 2.26 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 32 H 0.39 5.80 8.56 -40.82 -0.35 5.45 16 33 H 0.41 3.44 8.84 -40.82 -0.36 3.08 16 34 H 0.20 3.08 6.28 -52.49 -0.33 2.75 16 35 H 0.16 1.62 8.06 -52.49 -0.42 1.19 16 36 H 0.20 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.18 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 313.13 15.07 4.72 4.72 Total: -1.00 -30.42 313.13 -7.61 -38.03 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -4.10 Total: 9.74 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -3.73 Total: 3.90 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: 0.46 Total: -59.43 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.06 Total: -11.56 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.42 -7.61 -38.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888920995.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.498 kcal (2) G-P(sol) polarization free energy of solvation -30.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds