Wall clock time and date at job start Tue Mar 31 2020 05:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47273 * 2 1 4 4 H 1.09005 * 109.46844 * 304.99983 * 3 2 1 5 5 C 1.50699 * 109.47053 * 185.00054 * 3 2 1 6 6 H 1.07997 * 120.00193 * 239.99576 * 5 3 2 7 7 C 1.37879 * 120.00152 * 59.99952 * 5 3 2 8 8 N 1.31520 * 120.00020 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00142 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47443 * 60.00091 * 9 7 5 11 11 H 1.48500 * 109.47036 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46972 * 299.99805 * 9 7 5 13 13 N 1.46493 * 109.46908 * 64.99938 * 3 2 1 14 14 C 1.34774 * 120.00383 * 274.99816 * 13 3 2 15 15 O 1.21600 * 119.99575 * 0.02562 * 14 13 3 16 16 N 1.34773 * 120.00361 * 180.02562 * 14 13 3 17 17 C 1.40333 * 120.00294 * 184.67331 * 16 14 13 18 18 C 1.40749 * 120.34200 * 324.99083 * 17 16 14 19 19 N 1.31160 * 120.21998 * 180.02562 * 18 17 16 20 20 C 1.33964 * 120.92720 * 0.02562 * 19 18 17 21 21 C 1.38982 * 132.46629 * 180.02562 * 20 19 18 22 22 C 1.38602 * 107.64160 * 179.97438 * 21 20 19 23 23 N 1.31464 * 108.98580 * 359.97438 * 22 21 20 24 24 N 1.37079 * 120.65270 * 359.97438 * 20 19 18 25 25 C 1.36048 * 120.35136 * 145.01285 * 17 16 14 26 26 H 1.09004 * 109.47307 * 59.99782 * 1 2 3 27 27 H 1.08996 * 109.47345 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47476 * 299.99894 * 1 2 3 29 29 H 1.09008 * 109.47281 * 239.99590 * 2 1 3 30 30 H 1.09004 * 109.47307 * 120.00218 * 2 1 3 31 31 H 0.96998 * 120.00259 * 180.02562 * 8 7 5 32 32 H 0.97001 * 120.00028 * 95.00331 * 13 3 2 33 33 H 0.97001 * 120.00294 * 4.66904 * 16 14 13 34 34 H 1.08000 * 119.89136 * 0.02562 * 18 17 16 35 35 H 1.07995 * 126.18182 * 359.96644 * 21 20 19 36 36 H 1.07999 * 125.50710 * 180.02562 * 22 21 20 37 37 H 1.07994 * 120.47294 * 359.70454 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6522 7 6 4.1433 0.8783 -1.2280 8 7 3.4061 0.3374 -2.1734 9 14 6.0049 0.8811 -1.3818 10 1 6.5975 0.1472 -0.2350 11 1 6.3976 0.2176 -2.6510 12 1 6.4994 2.2814 -1.3823 13 7 1.6524 2.0974 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3416 2.6319 0.4319 16 7 0.0788 3.2674 2.5184 17 6 -1.2218 3.7712 2.6734 18 6 -1.9023 4.3323 1.5766 19 7 -3.1176 4.8029 1.7243 20 6 -3.7326 4.7604 2.9137 21 6 -4.9890 5.1785 3.3359 22 6 -5.0981 4.8838 4.6858 23 7 -3.9838 4.3158 5.0910 24 7 -3.1042 4.2220 4.0065 25 6 -1.8378 3.7227 3.8854 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8292 -0.0611 -2.9500 32 1 2.2719 2.1231 1.9977 33 1 0.7213 3.3531 3.2401 34 1 -1.4222 4.3755 0.6102 35 1 -5.7439 5.6483 2.7230 36 1 -5.9595 5.0870 5.3046 37 1 -1.3348 3.2923 4.7387 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888920995.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:20 Heat of formation + Delta-G solvation = 75.488531 kcal Electronic energy + Delta-G solvation = -22385.235700 eV Core-core repulsion = 18971.417054 eV Total energy + Delta-G solvation = -3413.818646 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.34968 -41.44080 -39.15259 -37.18714 -36.07207 -34.65227 -34.26592 -32.76289 -30.96230 -29.82635 -28.66105 -25.92131 -25.18909 -24.30132 -22.72683 -22.20581 -21.40835 -20.30046 -19.25090 -18.74583 -18.06071 -17.54611 -17.05528 -16.97323 -16.42225 -16.25058 -15.84533 -15.14712 -15.05336 -14.61448 -14.49875 -14.24250 -14.08501 -13.63276 -13.48243 -13.14562 -12.88585 -12.68897 -12.60256 -12.32088 -12.17584 -12.05642 -11.59993 -11.44248 -11.19802 -11.01948 -10.92880 -10.50214 -9.98397 -9.61647 -8.76787 -8.13121 -6.29688 -0.55019 -0.21550 0.86081 1.48648 1.49425 1.56861 1.61219 1.75633 2.10724 2.42196 2.45206 2.88105 3.07984 3.17364 3.27171 3.49204 3.91588 4.17938 4.33527 4.49115 4.53551 4.60271 4.77695 4.84228 4.98188 5.05544 5.11107 5.27445 5.42941 5.46751 5.54331 5.60374 5.63338 5.72966 5.88130 6.17628 6.21171 6.39498 6.53225 6.78258 7.19880 7.38049 7.65583 8.91792 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.041127 B = 0.003247 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.659405 B = 8622.571182 C = 8774.551199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.122 4.122 3 C 0.297 3.703 4 H 0.006 0.994 5 C -0.546 4.546 6 H 0.075 0.925 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.967 3.033 10 H -0.265 1.265 11 H -0.290 1.290 12 H -0.272 1.272 13 N -0.707 5.707 14 C 0.698 3.302 15 O -0.610 6.610 16 N -0.658 5.658 17 C 0.085 3.915 18 C 0.188 3.812 19 N -0.476 5.476 20 C 0.216 3.784 21 C -0.273 4.273 22 C 0.095 3.905 23 N -0.336 5.336 24 N -0.308 5.308 25 C 0.122 3.878 26 H 0.027 0.973 27 H 0.039 0.961 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.264 0.736 32 H 0.405 0.595 33 H 0.429 0.571 34 H 0.182 0.818 35 H 0.177 0.823 36 H 0.240 0.760 37 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.829 6.991 14.941 18.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.161 4.161 3 C 0.193 3.807 4 H 0.024 0.976 5 C -0.585 4.585 6 H 0.093 0.907 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.792 3.208 10 H -0.190 1.190 11 H -0.216 1.216 12 H -0.197 1.197 13 N -0.359 5.359 14 C 0.398 3.602 15 O -0.490 6.490 16 N -0.311 5.311 17 C -0.018 4.018 18 C 0.002 3.998 19 N -0.187 5.187 20 C -0.012 4.012 21 C -0.304 4.304 22 C -0.081 4.081 23 N -0.162 5.162 24 N -0.079 5.079 25 C -0.016 4.016 26 H 0.046 0.954 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.241 0.759 33 H 0.269 0.731 34 H 0.199 0.801 35 H 0.194 0.806 36 H 0.256 0.744 37 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -9.509 6.720 14.362 18.489 hybrid contribution 1.542 -0.135 -0.145 1.554 sum -7.967 6.585 14.217 17.577 Atomic orbital electron populations 1.21653 0.97113 0.98820 1.00291 1.21817 0.93551 0.99404 1.01349 1.18296 0.93382 0.88768 0.80237 0.97625 1.21541 0.91391 1.38883 1.06655 0.90723 1.25704 1.02918 0.94513 0.95150 1.70034 1.37017 1.38310 1.09852 0.85480 0.79555 0.78377 0.77400 1.19009 1.21614 1.19705 1.45392 1.13835 1.58036 1.18668 1.16068 0.83161 0.78453 0.82496 1.90903 1.52735 1.65719 1.39610 1.42109 1.10362 1.60428 1.18191 1.17516 0.88480 1.02137 0.93658 1.23890 0.88865 0.86950 1.00099 1.68330 1.10282 1.19927 1.20193 1.21315 0.96427 0.99665 0.83764 1.21361 0.95918 1.16243 0.96855 1.24499 0.96504 0.92598 0.94540 1.77859 1.02487 1.30040 1.05802 1.47091 1.11467 1.39436 1.09866 1.21780 0.82429 0.97228 1.00205 0.95377 0.94197 0.93847 0.91047 0.93983 0.92660 0.75926 0.73061 0.80137 0.80587 0.74368 0.76799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.19 8.51 71.98 0.61 -4.58 16 2 C -0.12 -5.63 5.45 30.59 0.17 -5.46 16 3 C 0.30 13.88 2.24 44.25 0.10 13.98 16 4 H 0.01 0.33 7.58 -2.38 -0.02 0.31 16 5 C -0.55 -26.73 8.73 25.60 0.22 -26.51 16 6 H 0.07 3.36 7.74 -2.91 -0.02 3.34 16 7 C 0.02 0.90 5.29 84.65 0.45 1.34 16 8 N -0.91 -50.12 11.30 21.45 0.24 -49.88 16 9 Si 0.97 40.10 29.54 68.60 2.03 42.13 16 10 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 11 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 12 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 13 N -0.71 -24.95 5.03 -461.41 -2.32 -27.27 16 14 C 0.70 23.45 6.99 179.06 1.25 24.70 16 15 O -0.61 -25.48 10.93 -4.03 -0.04 -25.52 16 16 N -0.66 -15.05 5.36 -317.49 -1.70 -16.75 16 17 C 0.08 2.09 6.28 37.88 0.24 2.33 16 18 C 0.19 5.70 9.94 85.41 0.85 6.55 16 19 N -0.48 -14.95 10.47 -192.15 -2.01 -16.96 16 20 C 0.22 6.19 7.92 133.20 1.05 7.24 16 21 C -0.27 -6.18 10.92 22.54 0.25 -5.94 16 22 C 0.10 1.77 11.94 84.83 1.01 2.78 16 23 N -0.34 -8.06 12.66 -57.52 -0.73 -8.79 16 24 N -0.31 -7.97 3.90 -192.01 -0.75 -8.71 16 25 C 0.12 2.60 11.22 83.43 0.94 3.53 16 26 H 0.03 1.30 7.84 -2.39 -0.02 1.28 16 27 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.04 1.77 5.64 -2.38 -0.01 1.76 16 29 H 0.07 3.75 5.95 -2.38 -0.01 3.74 16 30 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 32 H 0.41 11.41 8.56 -92.71 -0.79 10.62 16 33 H 0.43 6.09 8.84 -92.71 -0.82 5.27 16 34 H 0.18 6.03 6.28 -2.91 -0.02 6.01 16 35 H 0.18 3.22 8.06 -2.91 -0.02 3.20 16 36 H 0.24 1.94 8.06 -2.91 -0.02 1.92 16 37 H 0.22 2.78 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -68.09 313.13 1.38 -66.71 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: -0.48 Total: 25.08 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: 7.14 Total: 19.97 kcal Atomic # 7 Polarization: -121.10 SS G_CDS: -7.27 Total: -128.37 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.04 Total: -25.52 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.13 kcal Total: -68.09 1.38 -66.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888920995.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.199 kcal (2) G-P(sol) polarization free energy of solvation -68.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds