Wall clock time and date at job start Tue Mar 31 2020 05:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46987 * 2 1 4 4 H 1.09004 * 109.46538 * 55.00870 * 3 2 1 5 5 C 1.50702 * 109.47199 * 174.99935 * 3 2 1 6 6 H 1.08003 * 119.99425 * 120.27600 * 5 3 2 7 7 C 1.37876 * 120.00158 * 300.00737 * 5 3 2 8 8 N 1.31518 * 119.99947 * 179.97438 * 7 5 3 9 9 Si 1.86792 * 120.00042 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.47344 * 90.00070 * 9 7 5 11 11 H 1.48504 * 109.47176 * 209.99617 * 9 7 5 12 12 H 1.48500 * 109.47264 * 329.99960 * 9 7 5 13 13 N 1.46493 * 109.47622 * 295.00917 * 3 2 1 14 14 C 1.34770 * 120.00513 * 84.99697 * 13 3 2 15 15 O 1.21592 * 120.00035 * 359.97438 * 14 13 3 16 16 N 1.34777 * 120.00200 * 180.02562 * 14 13 3 17 17 C 1.40332 * 120.00010 * 175.32981 * 16 14 13 18 18 C 1.40739 * 120.34658 * 34.98313 * 17 16 14 19 19 N 1.31164 * 120.22260 * 179.97438 * 18 17 16 20 20 C 1.33959 * 120.92418 * 0.02562 * 19 18 17 21 21 C 1.38983 * 132.46605 * 179.97438 * 20 19 18 22 22 C 1.38599 * 107.64536 * 180.02562 * 21 20 19 23 23 N 1.31464 * 108.98342 * 359.97438 * 22 21 20 24 24 N 1.37072 * 120.66086 * 0.02562 * 20 19 18 25 25 C 1.36056 * 120.34912 * 214.71059 * 17 16 14 26 26 H 1.09002 * 109.46984 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46987 * 299.99215 * 1 2 3 28 28 H 1.08999 * 109.47619 * 59.99585 * 1 2 3 29 29 H 1.09000 * 109.46987 * 240.00785 * 2 1 3 30 30 H 1.08999 * 109.47619 * 120.00415 * 2 1 3 31 31 H 0.97001 * 119.99862 * 179.97438 * 8 7 5 32 32 H 0.97002 * 119.99603 * 264.99744 * 13 3 2 33 33 H 0.97005 * 120.00120 * 355.33587 * 16 14 13 34 34 H 1.08001 * 119.89155 * 0.02562 * 18 17 16 35 35 H 1.08004 * 126.17922 * 359.97438 * 21 20 19 36 36 H 1.07998 * 125.50784 * 180.02562 * 22 21 20 37 37 H 1.08006 * 120.47198 * 359.97217 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 0.8420 5 6 3.5419 1.4444 0.1238 6 1 4.1469 1.8930 -0.6502 7 6 4.1433 0.8784 1.2279 8 7 5.4540 0.8796 1.3357 9 14 3.0964 0.1099 2.5705 10 1 2.8746 -1.3262 2.2643 11 1 3.7943 0.2356 3.8753 12 1 1.7882 0.8091 2.6395 13 7 1.6523 2.0976 -1.2516 14 6 0.4350 2.6645 -1.3667 15 8 -0.3417 2.6319 -0.4317 16 7 0.0782 3.2668 -2.5184 17 6 -1.2224 3.7705 -2.6731 18 6 -1.9027 4.3319 -1.5764 19 7 -3.1181 4.8025 -1.7239 20 6 -3.7337 4.7587 -2.9128 21 6 -4.9903 5.1765 -3.3348 22 6 -5.1002 4.8803 -4.6843 23 7 -3.9858 4.3128 -5.0898 24 7 -3.1061 4.2192 -4.0055 25 6 -1.8369 3.7264 -3.8862 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 5.8771 0.4817 2.1126 32 1 2.2717 2.1234 -1.9976 33 1 0.7204 3.3520 -3.2404 34 1 -1.4220 4.3762 -0.6102 35 1 -5.7452 5.6462 -2.7217 36 1 -5.9617 5.0837 -5.3030 37 1 -1.3306 3.3041 -4.7417 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888920996.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:24 Heat of formation + Delta-G solvation = 104.792724 kcal Electronic energy + Delta-G solvation = -22480.948462 eV Core-core repulsion = 19068.400541 eV Total energy + Delta-G solvation = -3412.547921 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.41766 -40.30877 -38.13366 -35.92519 -34.90841 -33.64180 -32.55161 -31.66240 -29.96535 -28.82227 -27.44858 -24.95076 -23.68907 -22.70417 -21.75608 -21.22040 -20.10859 -19.17606 -18.10437 -17.72615 -16.81993 -16.38578 -16.05694 -15.76580 -15.25849 -14.99106 -14.43966 -14.28062 -13.66720 -13.61122 -13.34023 -13.18163 -12.83010 -12.50450 -12.12003 -11.91903 -11.63811 -11.40687 -11.19926 -11.01678 -10.73443 -10.50998 -10.04098 -9.99112 -9.91850 -9.52819 -9.34103 -8.95605 -8.84485 -8.30326 -7.84152 -6.30026 -4.33855 0.38869 0.75767 1.78646 2.46330 2.77012 3.17420 3.20441 3.30629 3.34162 3.48885 3.82944 3.99928 4.14481 4.23489 4.50049 4.80681 5.03612 5.06735 5.19524 5.35222 5.68524 5.87438 5.90762 5.94352 6.03065 6.06865 6.30968 6.46570 6.48308 6.61174 6.68261 6.78612 6.92580 7.12127 7.26434 7.28875 7.37883 7.52074 8.10011 8.39256 8.65843 8.80020 9.29640 10.81784 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.039744 B = 0.003481 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.335983 B = 8042.101654 C = 8233.340750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.141 4.141 3 C 0.259 3.741 4 H 0.053 0.947 5 C -0.539 4.539 6 H 0.081 0.919 7 C 0.080 3.920 8 N -0.890 5.890 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.293 1.293 12 H -0.259 1.259 13 N -0.703 5.703 14 C 0.698 3.302 15 O -0.577 6.577 16 N -0.681 5.681 17 C 0.097 3.903 18 C 0.198 3.802 19 N -0.452 5.452 20 C 0.246 3.754 21 C -0.269 4.269 22 C 0.082 3.918 23 N -0.319 5.319 24 N -0.295 5.295 25 C 0.102 3.898 26 H 0.031 0.969 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.269 0.731 32 H 0.395 0.605 33 H 0.410 0.590 34 H 0.199 0.801 35 H 0.160 0.840 36 H 0.196 0.804 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.993 5.743 -10.854 18.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.179 4.179 3 C 0.156 3.844 4 H 0.071 0.929 5 C -0.577 4.577 6 H 0.099 0.901 7 C -0.124 4.124 8 N -0.526 5.526 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.183 1.183 13 N -0.354 5.354 14 C 0.398 3.602 15 O -0.454 6.454 16 N -0.332 5.332 17 C -0.006 4.006 18 C 0.012 3.988 19 N -0.163 5.163 20 C 0.018 3.982 21 C -0.300 4.300 22 C -0.095 4.095 23 N -0.145 5.145 24 N -0.066 5.066 25 C -0.037 4.037 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.229 0.771 33 H 0.246 0.754 34 H 0.216 0.784 35 H 0.178 0.822 36 H 0.213 0.787 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -14.530 5.498 -10.296 18.638 hybrid contribution 0.358 -0.568 -0.051 0.673 sum -14.173 4.930 -10.347 18.227 Atomic orbital electron populations 1.21858 0.96837 0.99083 1.02230 1.22321 0.94419 0.99914 1.01271 1.19146 0.95617 0.88272 0.81405 0.92916 1.21000 0.88403 1.40140 1.08137 0.90121 1.24814 0.94880 0.95042 0.97649 1.69857 1.08713 1.44188 1.29853 0.86913 0.80977 0.79997 0.80933 1.20197 1.22072 1.18315 1.45458 1.13148 1.57720 1.19060 1.16002 0.83737 0.78540 0.81886 1.90903 1.51898 1.64702 1.37910 1.42563 1.10166 1.61499 1.18976 1.17698 0.88202 1.01101 0.93636 1.24063 0.88585 0.86303 0.99866 1.68400 1.09791 1.18896 1.19176 1.20910 0.95312 0.98409 0.83608 1.20930 0.96393 1.16733 0.95922 1.23761 0.96221 0.94723 0.94807 1.77887 1.01690 1.29279 1.05641 1.46873 1.10715 1.39048 1.09944 1.21330 0.83081 0.99493 0.99764 0.94999 0.92707 0.93137 0.92252 0.92575 0.92140 0.77146 0.75367 0.78433 0.82233 0.78744 0.80417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 8.51 37.16 0.32 -2.38 16 2 C -0.14 -2.89 5.11 -26.73 -0.14 -3.03 16 3 C 0.26 5.56 1.83 -69.08 -0.13 5.44 16 4 H 0.05 1.26 6.63 -51.93 -0.34 0.91 16 5 C -0.54 -13.53 9.31 -34.44 -0.32 -13.85 16 6 H 0.08 2.13 7.98 -52.48 -0.42 1.71 16 7 C 0.08 2.14 5.45 -17.82 -0.10 2.04 16 8 N -0.89 -25.29 13.96 55.43 0.77 -24.51 16 9 Si 0.88 20.70 24.41 -169.99 -4.15 16.55 16 10 H -0.28 -6.29 6.83 56.52 0.39 -5.91 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.26 -5.96 6.53 56.52 0.37 -5.60 16 13 N -0.70 -11.87 5.03 -59.81 -0.30 -12.17 16 14 C 0.70 10.98 6.99 -86.92 -0.61 10.37 16 15 O -0.58 -10.80 10.94 5.29 0.06 -10.75 16 16 N -0.68 -7.68 5.36 -14.33 -0.08 -7.76 16 17 C 0.10 1.16 6.28 -83.80 -0.53 0.64 16 18 C 0.20 2.77 9.94 -16.89 -0.17 2.60 16 19 N -0.45 -6.67 10.47 -12.09 -0.13 -6.79 16 20 C 0.25 3.48 7.92 -155.58 -1.23 2.25 16 21 C -0.27 -3.17 10.91 -39.17 -0.43 -3.59 16 22 C 0.08 0.85 11.94 -17.58 -0.21 0.64 16 23 N -0.32 -4.11 12.66 30.47 0.39 -3.73 16 24 N -0.29 -3.92 3.90 -12.04 -0.05 -3.97 16 25 C 0.10 1.13 11.22 -16.18 -0.18 0.95 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 1.10 7.84 -51.93 -0.41 0.69 16 28 H 0.05 0.93 5.64 -51.93 -0.29 0.64 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.06 1.24 3.22 -51.93 -0.17 1.07 16 31 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.39 5.67 8.56 -40.82 -0.35 5.32 16 33 H 0.41 3.16 8.84 -40.82 -0.36 2.80 16 34 H 0.20 2.88 6.28 -52.49 -0.33 2.55 16 35 H 0.16 1.54 8.06 -52.48 -0.42 1.12 16 36 H 0.20 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.18 1.39 8.06 -52.48 -0.42 0.96 16 LS Contribution 306.37 15.07 4.62 4.62 Total: -1.00 -31.70 306.37 -6.55 -38.25 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -3.97 Total: 8.18 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -3.72 Total: 2.08 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: 0.61 Total: -58.93 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.06 Total: -10.75 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.15 Total: 16.55 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.70 -6.55 -38.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888920996.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.042 kcal (2) G-P(sol) polarization free energy of solvation -31.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds