Wall clock time and date at job start Tue Mar 31 2020 05:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46987 * 2 1 4 4 H 1.09004 * 109.46538 * 55.00870 * 3 2 1 5 5 C 1.50702 * 109.47199 * 174.99935 * 3 2 1 6 6 H 1.08003 * 119.99425 * 120.27600 * 5 3 2 7 7 C 1.37876 * 120.00158 * 300.00737 * 5 3 2 8 8 N 1.31518 * 119.99947 * 179.97438 * 7 5 3 9 9 Si 1.86792 * 120.00042 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.47344 * 90.00070 * 9 7 5 11 11 H 1.48504 * 109.47176 * 209.99617 * 9 7 5 12 12 H 1.48500 * 109.47264 * 329.99960 * 9 7 5 13 13 N 1.46493 * 109.47622 * 295.00917 * 3 2 1 14 14 C 1.34770 * 120.00513 * 84.99697 * 13 3 2 15 15 O 1.21592 * 120.00035 * 359.97438 * 14 13 3 16 16 N 1.34777 * 120.00200 * 180.02562 * 14 13 3 17 17 C 1.40332 * 120.00010 * 175.32981 * 16 14 13 18 18 C 1.40739 * 120.34658 * 34.98313 * 17 16 14 19 19 N 1.31164 * 120.22260 * 179.97438 * 18 17 16 20 20 C 1.33959 * 120.92418 * 0.02562 * 19 18 17 21 21 C 1.38983 * 132.46605 * 179.97438 * 20 19 18 22 22 C 1.38599 * 107.64536 * 180.02562 * 21 20 19 23 23 N 1.31464 * 108.98342 * 359.97438 * 22 21 20 24 24 N 1.37072 * 120.66086 * 0.02562 * 20 19 18 25 25 C 1.36056 * 120.34912 * 214.71059 * 17 16 14 26 26 H 1.09002 * 109.46984 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46987 * 299.99215 * 1 2 3 28 28 H 1.08999 * 109.47619 * 59.99585 * 1 2 3 29 29 H 1.09000 * 109.46987 * 240.00785 * 2 1 3 30 30 H 1.08999 * 109.47619 * 120.00415 * 2 1 3 31 31 H 0.97001 * 119.99862 * 179.97438 * 8 7 5 32 32 H 0.97002 * 119.99603 * 264.99744 * 13 3 2 33 33 H 0.97005 * 120.00120 * 355.33587 * 16 14 13 34 34 H 1.08001 * 119.89155 * 0.02562 * 18 17 16 35 35 H 1.08004 * 126.17922 * 359.97438 * 21 20 19 36 36 H 1.07998 * 125.50784 * 180.02562 * 22 21 20 37 37 H 1.08006 * 120.47198 * 359.97217 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 0.8420 5 6 3.5419 1.4444 0.1238 6 1 4.1469 1.8930 -0.6502 7 6 4.1433 0.8784 1.2279 8 7 5.4540 0.8796 1.3357 9 14 3.0964 0.1099 2.5705 10 1 2.8746 -1.3262 2.2643 11 1 3.7943 0.2356 3.8753 12 1 1.7882 0.8091 2.6395 13 7 1.6523 2.0976 -1.2516 14 6 0.4350 2.6645 -1.3667 15 8 -0.3417 2.6319 -0.4317 16 7 0.0782 3.2668 -2.5184 17 6 -1.2224 3.7705 -2.6731 18 6 -1.9027 4.3319 -1.5764 19 7 -3.1181 4.8025 -1.7239 20 6 -3.7337 4.7587 -2.9128 21 6 -4.9903 5.1765 -3.3348 22 6 -5.1002 4.8803 -4.6843 23 7 -3.9858 4.3128 -5.0898 24 7 -3.1061 4.2192 -4.0055 25 6 -1.8369 3.7264 -3.8862 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 5.8771 0.4817 2.1126 32 1 2.2717 2.1234 -1.9976 33 1 0.7204 3.3520 -3.2404 34 1 -1.4220 4.3762 -0.6102 35 1 -5.7452 5.6462 -2.7217 36 1 -5.9617 5.0837 -5.3030 37 1 -1.3306 3.3041 -4.7417 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888920996.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:23 Heat of formation + Delta-G solvation = 81.364780 kcal Electronic energy + Delta-G solvation = -22481.964374 eV Core-core repulsion = 19068.400541 eV Total energy + Delta-G solvation = -3413.563833 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.35783 -41.52321 -39.21014 -37.36100 -36.10497 -34.66735 -34.37577 -33.17538 -30.99215 -29.91342 -29.07467 -25.92542 -24.95645 -24.24891 -22.86944 -22.32211 -21.58103 -20.41194 -19.29020 -18.83698 -18.21004 -17.69087 -17.32550 -17.01060 -16.40468 -16.33414 -15.89766 -15.14106 -15.09730 -15.04789 -14.57276 -14.32858 -14.09115 -13.83871 -13.71367 -13.56597 -12.97707 -12.75505 -12.66927 -12.40191 -12.31975 -11.83331 -11.53435 -11.38837 -11.22226 -11.15402 -10.94033 -10.83983 -10.02808 -9.72980 -8.77895 -8.35596 -6.40908 -0.55108 -0.22333 0.84541 1.30645 1.39645 1.48048 1.59467 1.70264 2.05486 2.28562 2.40896 2.87579 3.00941 3.03791 3.25380 3.41857 3.89464 4.16695 4.27349 4.32790 4.35510 4.48015 4.48938 4.82245 4.85264 4.97665 5.05182 5.06300 5.13491 5.23272 5.41286 5.41895 5.54036 5.59783 5.64010 5.86800 6.25307 6.39057 6.52885 6.62762 7.08162 7.24220 7.54497 8.79348 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.039744 B = 0.003481 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.335983 B = 8042.101654 C = 8233.340750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.139 4.139 3 C 0.268 3.732 4 H 0.030 0.970 5 C -0.530 4.530 6 H 0.060 0.940 7 C 0.031 3.969 8 N -0.934 5.934 9 Si 0.933 3.067 10 H -0.263 1.263 11 H -0.297 1.297 12 H -0.256 1.256 13 N -0.703 5.703 14 C 0.702 3.298 15 O -0.606 6.606 16 N -0.658 5.658 17 C 0.084 3.916 18 C 0.189 3.811 19 N -0.475 5.475 20 C 0.217 3.783 21 C -0.273 4.273 22 C 0.095 3.905 23 N -0.337 5.337 24 N -0.308 5.308 25 C 0.123 3.877 26 H 0.052 0.948 27 H 0.038 0.962 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.043 0.957 31 H 0.269 0.731 32 H 0.408 0.592 33 H 0.430 0.570 34 H 0.185 0.815 35 H 0.177 0.823 36 H 0.239 0.761 37 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.037 5.505 -12.821 21.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.177 4.177 3 C 0.163 3.837 4 H 0.048 0.952 5 C -0.569 4.569 6 H 0.078 0.922 7 C -0.169 4.169 8 N -0.573 5.573 9 Si 0.760 3.240 10 H -0.189 1.189 11 H -0.225 1.225 12 H -0.180 1.180 13 N -0.355 5.355 14 C 0.403 3.597 15 O -0.486 6.486 16 N -0.310 5.310 17 C -0.018 4.018 18 C 0.003 3.997 19 N -0.186 5.186 20 C -0.011 4.011 21 C -0.304 4.304 22 C -0.082 4.082 23 N -0.162 5.162 24 N -0.079 5.079 25 C -0.016 4.016 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.244 0.756 33 H 0.270 0.730 34 H 0.202 0.798 35 H 0.194 0.806 36 H 0.255 0.745 37 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -16.587 5.283 -12.327 21.330 hybrid contribution 0.880 -0.376 0.425 1.047 sum -15.707 4.907 -11.902 20.309 Atomic orbital electron populations 1.21735 0.95305 1.00241 1.01638 1.22237 0.95680 0.98708 1.01096 1.18704 0.92992 0.89267 0.82722 0.95241 1.21273 0.90318 1.38268 1.06996 0.92164 1.25498 0.95612 0.95956 0.99825 1.69970 1.10306 1.46219 1.30838 0.86096 0.79551 0.79937 0.78395 1.18854 1.22514 1.17990 1.45064 1.14162 1.58146 1.18123 1.15953 0.82872 0.78318 0.82591 1.90899 1.52598 1.65651 1.39417 1.42070 1.10454 1.60314 1.18153 1.17495 0.88358 1.02302 0.93679 1.23915 0.88811 0.86890 1.00127 1.68338 1.10302 1.19898 1.20105 1.21299 0.96420 0.99578 0.83810 1.21364 0.95982 1.16172 0.96845 1.24495 0.96508 0.92598 0.94578 1.77866 1.02490 1.30063 1.05806 1.47093 1.11378 1.39529 1.09875 1.21790 0.82360 0.97201 1.00212 0.92884 0.94270 0.92775 0.91193 0.93908 0.92155 0.75610 0.73006 0.79833 0.80592 0.74450 0.76861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.74 8.51 71.98 0.61 -4.13 16 2 C -0.14 -5.50 5.11 30.59 0.16 -5.35 16 3 C 0.27 11.41 1.83 44.25 0.08 11.49 16 4 H 0.03 1.42 6.63 -2.38 -0.02 1.40 16 5 C -0.53 -26.81 9.31 25.60 0.24 -26.58 16 6 H 0.06 3.23 7.98 -2.91 -0.02 3.20 16 7 C 0.03 1.66 5.45 84.65 0.46 2.13 16 8 N -0.93 -54.13 13.96 21.45 0.30 -53.84 16 9 Si 0.93 42.86 24.41 68.60 1.67 44.54 16 10 H -0.26 -11.45 6.83 99.48 0.68 -10.77 16 11 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 12 H -0.26 -11.51 6.53 99.48 0.65 -10.86 16 13 N -0.70 -23.03 5.03 -461.42 -2.32 -25.35 16 14 C 0.70 21.34 6.99 179.06 1.25 22.59 16 15 O -0.61 -22.55 10.94 -4.00 -0.04 -22.59 16 16 N -0.66 -13.62 5.36 -317.50 -1.70 -15.32 16 17 C 0.08 1.90 6.28 37.88 0.24 2.14 16 18 C 0.19 5.26 9.94 85.40 0.85 6.11 16 19 N -0.47 -13.98 10.47 -192.17 -2.01 -15.99 16 20 C 0.22 5.87 7.92 133.20 1.05 6.92 16 21 C -0.27 -5.85 10.91 22.53 0.25 -5.60 16 22 C 0.09 1.67 11.94 84.83 1.01 2.68 16 23 N -0.34 -7.73 12.66 -57.52 -0.73 -8.45 16 24 N -0.31 -7.54 3.90 -191.99 -0.75 -8.29 16 25 C 0.12 2.42 11.22 83.43 0.94 3.35 16 26 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.04 1.52 7.84 -2.39 -0.02 1.50 16 28 H 0.05 1.89 5.64 -2.39 -0.01 1.88 16 29 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.04 1.82 3.22 -2.39 -0.01 1.81 16 31 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 32 H 0.41 11.15 8.56 -92.71 -0.79 10.36 16 33 H 0.43 5.47 8.84 -92.70 -0.82 4.65 16 34 H 0.18 5.55 6.28 -2.91 -0.02 5.53 16 35 H 0.18 3.02 8.06 -2.91 -0.02 2.99 16 36 H 0.24 1.75 8.06 -2.91 -0.02 1.73 16 37 H 0.21 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -69.47 306.37 1.00 -68.47 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: -0.55 Total: 21.06 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: 7.14 Total: 15.76 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -7.21 Total: -127.24 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.04 Total: -22.59 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.67 Total: 44.54 kcal Total: -69.47 1.00 -68.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888920996.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.834 kcal (2) G-P(sol) polarization free energy of solvation -69.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds