Wall clock time and date at job start Tue Mar 31 2020 05:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47502 * 2 1 4 4 H 1.08997 * 109.47125 * 305.00562 * 3 2 1 5 5 C 1.50703 * 109.47243 * 184.99676 * 3 2 1 6 6 H 1.07998 * 119.99903 * 239.99821 * 5 3 2 7 7 C 1.37876 * 119.99608 * 60.00730 * 5 3 2 8 8 N 1.31514 * 120.00118 * 180.02562 * 7 5 3 9 9 Si 1.86799 * 120.00027 * 359.97438 * 7 5 3 10 10 H 1.48504 * 109.47446 * 270.00137 * 9 7 5 11 11 H 1.48502 * 109.47263 * 30.00711 * 9 7 5 12 12 H 1.48508 * 109.47065 * 150.00332 * 9 7 5 13 13 N 1.46507 * 109.46658 * 65.00100 * 3 2 1 14 14 C 1.34779 * 119.99895 * 274.99664 * 13 3 2 15 15 O 1.21592 * 120.00043 * 0.02562 * 14 13 3 16 16 N 1.34776 * 119.99471 * 180.02562 * 14 13 3 17 17 C 1.40387 * 119.99499 * 174.69883 * 16 14 13 18 18 C 1.40690 * 120.41157 * 327.30025 * 17 16 14 19 19 N 1.31177 * 120.32331 * 180.02562 * 18 17 16 20 20 C 1.34055 * 121.03896 * 359.97438 * 19 18 17 21 21 N 1.32628 * 131.84667 * 179.97438 * 20 19 18 22 22 C 1.33584 * 109.24815 * 180.02562 * 21 20 19 23 23 C 1.35044 * 108.61383 * 359.97438 * 22 21 20 24 24 N 1.36812 * 107.10166 * 0.02562 * 23 22 21 25 25 C 1.36092 * 120.40860 * 147.02345 * 17 16 14 26 26 H 1.09005 * 109.46913 * 59.99525 * 1 2 3 27 27 H 1.08998 * 109.47236 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47191 * 300.00170 * 1 2 3 29 29 H 1.08999 * 109.46857 * 239.99782 * 2 1 3 30 30 H 1.09005 * 109.46913 * 120.00475 * 2 1 3 31 31 H 0.96994 * 119.99910 * 179.97438 * 8 7 5 32 32 H 0.97001 * 120.00076 * 95.00388 * 13 3 2 33 33 H 0.96993 * 120.00509 * 354.69992 * 16 14 13 34 34 H 1.08000 * 119.83325 * 359.97438 * 18 17 16 35 35 H 1.08003 * 125.69425 * 180.02562 * 22 21 20 36 36 H 1.08000 * 126.45098 * 180.02562 * 23 22 21 37 37 H 1.07993 * 120.49689 * 359.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5420 1.4442 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1433 0.8783 -1.2279 8 7 5.4540 0.8794 -1.3358 9 14 3.0963 0.1090 -2.5701 10 1 2.8754 -1.3272 -2.2636 11 1 1.7877 0.8076 -2.6387 12 1 3.7937 0.2349 -3.8752 13 7 1.6525 2.0974 1.2519 14 6 0.4352 2.6644 1.3670 15 8 -0.3415 2.6319 0.4321 16 7 0.0790 3.2673 2.5186 17 6 -1.1427 3.9539 2.6026 18 6 -1.6677 4.6138 1.4764 19 7 -2.8091 5.2552 1.5570 20 6 -3.4988 5.2971 2.7057 21 7 -4.6513 5.8704 3.0254 22 6 -4.9233 5.6260 4.3102 23 6 -3.9244 4.8789 4.8277 24 7 -3.0198 4.6657 3.8237 25 6 -1.8365 3.9846 3.7729 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.8770 0.4810 -2.1124 32 1 2.2720 2.1230 1.9979 33 1 0.6665 3.2269 3.2892 34 1 -1.1278 4.5928 0.5412 35 1 -5.7967 5.9680 4.8455 36 1 -3.8530 4.5178 5.8430 37 1 -1.4557 3.4813 4.6492 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888997556.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:27 Heat of formation + Delta-G solvation = 94.274978 kcal Electronic energy + Delta-G solvation = -22502.889477 eV Core-core repulsion = 19089.885472 eV Total energy + Delta-G solvation = -3413.004005 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.10532 -40.42255 -38.29768 -35.92195 -34.99302 -34.24061 -32.57357 -31.68355 -29.48565 -29.30754 -27.48483 -24.97337 -23.66659 -22.71177 -21.99415 -21.34170 -20.13829 -19.24619 -18.22075 -17.89878 -16.80220 -16.49662 -16.26136 -15.94974 -15.39084 -14.90388 -14.48852 -14.27531 -14.00502 -13.64813 -13.58948 -13.37952 -12.81722 -12.42939 -12.17432 -12.04193 -11.89172 -11.20890 -11.03472 -10.78190 -10.72884 -10.45488 -10.03368 -9.99464 -9.93242 -9.53813 -9.35133 -8.88273 -8.60755 -8.34112 -8.14572 -6.30698 -4.34659 0.36068 0.90655 2.05690 2.55598 2.76391 3.17137 3.28816 3.30533 3.34073 3.52998 3.58722 4.07721 4.19105 4.23063 4.47303 4.63172 4.97099 5.02968 5.06962 5.21689 5.60705 5.86069 5.89171 5.93037 6.05388 6.07195 6.36226 6.44932 6.49624 6.59805 6.66468 6.76565 6.91199 7.10523 7.25137 7.36663 7.40718 7.82880 8.08533 8.37496 8.64793 8.77927 9.28892 10.81093 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.039164 B = 0.003475 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.772979 B = 8056.481421 C = 8191.462377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.141 4.141 3 C 0.259 3.741 4 H 0.054 0.946 5 C -0.539 4.539 6 H 0.081 0.919 7 C 0.081 3.919 8 N -0.890 5.890 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.258 1.258 12 H -0.293 1.293 13 N -0.703 5.703 14 C 0.696 3.304 15 O -0.573 6.573 16 N -0.682 5.682 17 C 0.120 3.880 18 C 0.189 3.811 19 N -0.423 5.423 20 C 0.364 3.636 21 N -0.475 5.475 22 C 0.042 3.958 23 C -0.101 4.101 24 N -0.380 5.380 25 C 0.042 3.958 26 H 0.054 0.946 27 H 0.031 0.969 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.269 0.731 32 H 0.395 0.605 33 H 0.410 0.590 34 H 0.198 0.802 35 H 0.186 0.814 36 H 0.184 0.816 37 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.102 4.096 14.162 19.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.180 4.180 3 C 0.155 3.845 4 H 0.071 0.929 5 C -0.577 4.577 6 H 0.099 0.901 7 C -0.124 4.124 8 N -0.526 5.526 9 Si 0.711 3.289 10 H -0.202 1.202 11 H -0.183 1.183 12 H -0.220 1.220 13 N -0.354 5.354 14 C 0.396 3.604 15 O -0.450 6.450 16 N -0.332 5.332 17 C 0.018 3.982 18 C -0.001 4.001 19 N -0.134 5.134 20 C 0.016 3.984 21 N -0.197 5.197 22 C -0.112 4.112 23 C -0.233 4.233 24 N -0.056 5.056 25 C -0.094 4.094 26 H 0.073 0.927 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.228 0.772 33 H 0.246 0.754 34 H 0.214 0.786 35 H 0.203 0.797 36 H 0.201 0.799 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -13.554 4.909 11.972 18.738 hybrid contribution 1.131 -1.560 1.446 2.410 sum -12.422 3.349 13.418 18.590 Atomic orbital electron populations 1.21862 0.96825 0.99090 1.02257 1.22326 0.94422 0.99926 1.01279 1.19158 0.95647 0.88276 0.81379 0.92877 1.20989 0.88364 1.40297 1.08045 0.90122 1.24811 0.94879 0.95031 0.97641 1.69852 1.08719 1.44144 1.29871 0.86918 0.81004 0.79981 0.80951 1.20203 1.18294 1.22046 1.45477 1.12826 1.58038 1.19025 1.16030 0.83698 0.78681 0.81977 1.90942 1.51710 1.64283 1.38110 1.42662 1.18671 1.55990 1.15850 1.17746 0.89093 0.97077 0.94283 1.23797 0.89851 0.87319 0.99085 1.68036 1.06931 1.18677 1.19757 1.22114 0.94329 0.98292 0.83664 1.70727 1.10530 1.24114 1.14352 1.22571 0.99417 0.98622 0.90563 1.22581 0.93702 1.12053 0.94972 1.43699 1.14929 1.33892 1.13122 1.21450 0.86412 1.00586 1.00933 0.92687 0.94983 0.93139 0.92558 0.92267 0.92125 0.77166 0.75413 0.78577 0.79672 0.79855 0.80821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 8.51 37.16 0.32 -2.36 16 2 C -0.14 -2.87 5.11 -26.73 -0.14 -3.01 16 3 C 0.26 5.52 1.83 -69.08 -0.13 5.40 16 4 H 0.05 1.26 6.63 -51.93 -0.34 0.92 16 5 C -0.54 -13.46 9.31 -34.44 -0.32 -13.78 16 6 H 0.08 2.12 7.98 -52.49 -0.42 1.70 16 7 C 0.08 2.14 5.45 -17.82 -0.10 2.05 16 8 N -0.89 -25.21 13.96 55.43 0.77 -24.44 16 9 Si 0.88 20.66 24.41 -169.99 -4.15 16.51 16 10 H -0.28 -6.27 6.83 56.52 0.39 -5.89 16 11 H -0.26 -5.96 6.53 56.52 0.37 -5.59 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 N -0.70 -11.71 5.03 -59.81 -0.30 -12.01 16 14 C 0.70 10.81 6.90 -86.92 -0.60 10.21 16 15 O -0.57 -10.78 11.16 5.28 0.06 -10.73 16 16 N -0.68 -7.43 5.37 -14.31 -0.08 -7.51 16 17 C 0.12 1.41 6.27 -83.78 -0.53 0.89 16 18 C 0.19 2.72 9.90 -16.91 -0.17 2.55 16 19 N -0.42 -6.84 10.47 -13.59 -0.14 -6.98 16 20 C 0.36 5.63 8.92 -322.55 -2.88 2.76 16 21 N -0.47 -7.28 11.32 -14.46 -0.16 -7.44 16 22 C 0.04 0.45 11.83 -17.92 -0.21 0.24 16 23 C -0.10 -0.94 11.77 -16.47 -0.19 -1.13 16 24 N -0.38 -4.51 2.95 -64.22 -0.19 -4.70 16 25 C 0.04 0.41 10.98 -16.19 -0.18 0.23 16 26 H 0.05 1.10 7.84 -51.93 -0.41 0.69 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.92 5.64 -51.93 -0.29 0.62 16 29 H 0.06 1.23 3.21 -51.93 -0.17 1.06 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.39 5.55 8.56 -40.82 -0.35 5.20 16 33 H 0.41 2.93 8.83 -40.82 -0.36 2.57 16 34 H 0.20 2.93 6.44 -52.49 -0.34 2.59 16 35 H 0.19 1.24 8.06 -52.48 -0.42 0.81 16 36 H 0.18 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 305.80 15.07 4.61 4.61 Total: -1.00 -33.07 305.80 -8.67 -41.74 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -3.98 Total: 6.91 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: -5.12 Total: 4.04 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: -0.10 Total: -63.08 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.06 Total: -10.73 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.15 Total: 16.51 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.07 -8.67 -41.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888997556.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.013 kcal (2) G-P(sol) polarization free energy of solvation -33.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds