Wall clock time and date at job start Tue Mar 31 2020 05:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47502 * 2 1 4 4 H 1.08997 * 109.47125 * 305.00562 * 3 2 1 5 5 C 1.50703 * 109.47243 * 184.99676 * 3 2 1 6 6 H 1.07998 * 119.99903 * 239.99821 * 5 3 2 7 7 C 1.37876 * 119.99608 * 60.00730 * 5 3 2 8 8 N 1.31514 * 120.00118 * 180.02562 * 7 5 3 9 9 Si 1.86799 * 120.00027 * 359.97438 * 7 5 3 10 10 H 1.48504 * 109.47446 * 270.00137 * 9 7 5 11 11 H 1.48502 * 109.47263 * 30.00711 * 9 7 5 12 12 H 1.48508 * 109.47065 * 150.00332 * 9 7 5 13 13 N 1.46507 * 109.46658 * 65.00100 * 3 2 1 14 14 C 1.34779 * 119.99895 * 274.99664 * 13 3 2 15 15 O 1.21592 * 120.00043 * 0.02562 * 14 13 3 16 16 N 1.34776 * 119.99471 * 180.02562 * 14 13 3 17 17 C 1.40387 * 119.99499 * 174.69883 * 16 14 13 18 18 C 1.40690 * 120.41157 * 327.30025 * 17 16 14 19 19 N 1.31177 * 120.32331 * 180.02562 * 18 17 16 20 20 C 1.34055 * 121.03896 * 359.97438 * 19 18 17 21 21 N 1.32628 * 131.84667 * 179.97438 * 20 19 18 22 22 C 1.33584 * 109.24815 * 180.02562 * 21 20 19 23 23 C 1.35044 * 108.61383 * 359.97438 * 22 21 20 24 24 N 1.36812 * 107.10166 * 0.02562 * 23 22 21 25 25 C 1.36092 * 120.40860 * 147.02345 * 17 16 14 26 26 H 1.09005 * 109.46913 * 59.99525 * 1 2 3 27 27 H 1.08998 * 109.47236 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47191 * 300.00170 * 1 2 3 29 29 H 1.08999 * 109.46857 * 239.99782 * 2 1 3 30 30 H 1.09005 * 109.46913 * 120.00475 * 2 1 3 31 31 H 0.96994 * 119.99910 * 179.97438 * 8 7 5 32 32 H 0.97001 * 120.00076 * 95.00388 * 13 3 2 33 33 H 0.96993 * 120.00509 * 354.69992 * 16 14 13 34 34 H 1.08000 * 119.83325 * 359.97438 * 18 17 16 35 35 H 1.08003 * 125.69425 * 180.02562 * 22 21 20 36 36 H 1.08000 * 126.45098 * 180.02562 * 23 22 21 37 37 H 1.07993 * 120.49689 * 359.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5420 1.4442 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1433 0.8783 -1.2279 8 7 5.4540 0.8794 -1.3358 9 14 3.0963 0.1090 -2.5701 10 1 2.8754 -1.3272 -2.2636 11 1 1.7877 0.8076 -2.6387 12 1 3.7937 0.2349 -3.8752 13 7 1.6525 2.0974 1.2519 14 6 0.4352 2.6644 1.3670 15 8 -0.3415 2.6319 0.4321 16 7 0.0790 3.2673 2.5186 17 6 -1.1427 3.9539 2.6026 18 6 -1.6677 4.6138 1.4764 19 7 -2.8091 5.2552 1.5570 20 6 -3.4988 5.2971 2.7057 21 7 -4.6513 5.8704 3.0254 22 6 -4.9233 5.6260 4.3102 23 6 -3.9244 4.8789 4.8277 24 7 -3.0198 4.6657 3.8237 25 6 -1.8365 3.9846 3.7729 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.8770 0.4810 -2.1124 32 1 2.2720 2.1230 1.9979 33 1 0.6665 3.2269 3.2892 34 1 -1.1278 4.5928 0.5412 35 1 -5.7967 5.9680 4.8455 36 1 -3.8530 4.5178 5.8430 37 1 -1.4557 3.4813 4.6492 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888997556.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:26 Heat of formation + Delta-G solvation = 70.901926 kcal Electronic energy + Delta-G solvation = -22503.903009 eV Core-core repulsion = 19089.885472 eV Total energy + Delta-G solvation = -3414.017536 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.00421 -41.60027 -39.37126 -37.35808 -36.12392 -35.26319 -34.40526 -33.19978 -30.55667 -30.19876 -29.16009 -25.89239 -24.94800 -24.22623 -22.99012 -22.46998 -21.59881 -20.45485 -19.30498 -19.03481 -18.17109 -17.71566 -17.44575 -17.22818 -16.49245 -16.27123 -15.92253 -15.14743 -15.06603 -15.04529 -14.78397 -14.54311 -14.33784 -13.82932 -13.69203 -13.46998 -13.10444 -12.93955 -12.75184 -12.40143 -11.85490 -11.75734 -11.52717 -11.32002 -11.22282 -11.15981 -10.89221 -10.84006 -9.89252 -9.42761 -9.07773 -8.35792 -6.40895 -0.51938 -0.04533 1.13528 1.30038 1.39642 1.47817 1.70638 1.80318 2.12992 2.28306 2.53666 2.62286 3.01044 3.09127 3.40873 3.48671 3.86693 4.02657 4.27707 4.35703 4.38565 4.47021 4.50278 4.69105 4.85121 5.00025 5.05951 5.13807 5.16663 5.23735 5.42133 5.51263 5.56519 5.63425 5.66659 5.88476 6.25883 6.48100 6.62871 6.91664 7.09357 7.24474 7.55387 8.79128 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.039164 B = 0.003475 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.772979 B = 8056.481421 C = 8191.462377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.139 4.139 3 C 0.268 3.732 4 H 0.027 0.973 5 C -0.529 4.529 6 H 0.061 0.939 7 C 0.032 3.968 8 N -0.934 5.934 9 Si 0.931 3.069 10 H -0.261 1.261 11 H -0.258 1.258 12 H -0.298 1.298 13 N -0.702 5.702 14 C 0.700 3.300 15 O -0.607 6.607 16 N -0.656 5.656 17 C 0.100 3.900 18 C 0.176 3.824 19 N -0.464 5.464 20 C 0.326 3.674 21 N -0.519 5.519 22 C 0.027 3.973 23 C -0.074 4.074 24 N -0.384 5.384 25 C 0.078 3.922 26 H 0.035 0.965 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.269 0.731 32 H 0.409 0.591 33 H 0.431 0.569 34 H 0.178 0.822 35 H 0.220 0.780 36 H 0.237 0.763 37 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.626 3.187 17.581 22.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.177 4.177 3 C 0.163 3.837 4 H 0.045 0.955 5 C -0.568 4.568 6 H 0.079 0.921 7 C -0.168 4.168 8 N -0.573 5.573 9 Si 0.759 3.241 10 H -0.187 1.187 11 H -0.182 1.182 12 H -0.226 1.226 13 N -0.354 5.354 14 C 0.400 3.600 15 O -0.486 6.486 16 N -0.308 5.308 17 C -0.002 4.002 18 C -0.013 4.013 19 N -0.176 5.176 20 C -0.022 4.022 21 N -0.243 5.243 22 C -0.125 4.125 23 C -0.205 4.205 24 N -0.061 5.061 25 C -0.058 4.058 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.245 0.755 33 H 0.272 0.728 34 H 0.195 0.805 35 H 0.237 0.763 36 H 0.253 0.747 37 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -15.092 4.021 15.463 21.978 hybrid contribution 1.482 -1.153 0.567 1.961 sum -13.611 2.867 16.030 21.223 Atomic orbital electron populations 1.21739 0.95313 1.00265 1.01623 1.22236 0.95663 0.98653 1.01152 1.18703 0.93006 0.89315 0.82721 0.95471 1.21266 0.90284 1.38339 1.06885 0.92071 1.25482 0.95586 0.95976 0.99781 1.69962 1.10271 1.46210 1.30846 0.86115 0.79503 0.79993 0.78460 1.18737 1.18195 1.22575 1.45058 1.13846 1.58480 1.18046 1.15993 0.82818 0.78414 0.82727 1.90939 1.52530 1.65349 1.39809 1.42106 1.18821 1.54814 1.15069 1.17558 0.89822 0.98271 0.94520 1.23572 0.89800 0.88190 0.99709 1.67872 1.08010 1.20253 1.21477 1.22087 0.95108 1.00331 0.84644 1.70650 1.11267 1.25307 1.17038 1.23328 1.01130 0.98827 0.89251 1.23485 0.91632 1.09446 0.95943 1.43910 1.15750 1.33636 1.12838 1.22106 0.84527 0.97702 1.01432 0.94562 0.92789 0.92582 0.94005 0.90973 0.92156 0.75543 0.72823 0.80519 0.76335 0.74660 0.75412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.71 8.51 71.98 0.61 -4.10 16 2 C -0.14 -5.44 5.11 30.59 0.16 -5.29 16 3 C 0.27 11.35 1.83 44.24 0.08 11.43 16 4 H 0.03 1.32 6.63 -2.39 -0.02 1.30 16 5 C -0.53 -26.66 9.31 25.60 0.24 -26.42 16 6 H 0.06 3.25 7.98 -2.91 -0.02 3.23 16 7 C 0.03 1.70 5.45 84.65 0.46 2.16 16 8 N -0.93 -54.00 13.96 21.45 0.30 -53.70 16 9 Si 0.93 42.97 24.41 68.60 1.67 44.64 16 10 H -0.26 -11.39 6.83 99.48 0.68 -10.71 16 11 H -0.26 -11.73 6.53 99.48 0.65 -11.08 16 12 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 13 N -0.70 -22.60 5.03 -461.39 -2.32 -24.92 16 14 C 0.70 20.97 6.90 179.05 1.23 22.20 16 15 O -0.61 -22.89 11.16 -4.01 -0.04 -22.94 16 16 N -0.66 -12.70 5.37 -317.46 -1.70 -14.41 16 17 C 0.10 2.15 6.27 37.87 0.24 2.39 16 18 C 0.18 5.17 9.90 85.39 0.85 6.02 16 19 N -0.46 -15.55 10.47 -196.89 -2.06 -17.61 16 20 C 0.33 9.92 8.92 261.39 2.33 12.26 16 21 N -0.52 -15.60 11.32 -199.66 -2.26 -17.86 16 22 C 0.03 0.49 11.83 83.69 0.99 1.48 16 23 C -0.07 -1.02 11.77 83.18 0.98 -0.04 16 24 N -0.38 -7.87 2.95 -357.10 -1.05 -8.93 16 25 C 0.08 1.19 10.98 83.45 0.92 2.10 16 26 H 0.04 1.41 7.84 -2.38 -0.02 1.39 16 27 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.06 1.92 5.64 -2.38 -0.01 1.91 16 29 H 0.04 1.77 3.21 -2.39 -0.01 1.76 16 30 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 31 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 32 H 0.41 10.80 8.56 -92.71 -0.79 10.01 16 33 H 0.43 4.55 8.83 -92.71 -0.82 3.73 16 34 H 0.18 5.70 6.44 -2.91 -0.02 5.68 16 35 H 0.22 2.14 8.06 -2.91 -0.02 2.12 16 36 H 0.24 0.64 8.06 -2.91 -0.02 0.62 16 37 H 0.23 0.90 8.06 -2.91 -0.02 0.88 16 Total: -1.00 -76.68 305.80 1.06 -75.62 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -0.55 Total: 15.91 kcal Atomic # 6 Polarization: 15.11 SS G_CDS: 9.08 Total: 24.19 kcal Atomic # 7 Polarization: -128.33 SS G_CDS: -9.10 Total: -137.43 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.04 Total: -22.94 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.67 Total: 44.64 kcal Total: -76.68 1.06 -75.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888997556.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.523 kcal (2) G-P(sol) polarization free energy of solvation -76.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds