Wall clock time and date at job start Tue Mar 31 2020 06:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00069 * 2 1 4 4 H 1.48505 * 109.46855 * 269.99939 * 3 2 1 5 5 H 1.48499 * 109.47165 * 29.99762 * 3 2 1 6 6 H 1.48499 * 109.47185 * 150.00103 * 3 2 1 7 7 C 1.37879 * 119.99638 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99405 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00391 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47038 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46845 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.47314 * 180.02562 * 11 10 9 13 13 O 1.21285 * 119.99477 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00445 * 180.02562 * 12 11 10 15 15 C 1.46491 * 119.99981 * 180.02562 * 14 12 11 16 16 H 1.09008 * 110.73154 * 328.39861 * 15 14 12 17 17 C 1.54343 * 110.82691 * 92.02399 * 15 14 12 18 18 C 1.51377 * 105.17087 * 144.56859 * 17 15 14 19 19 C 1.38495 * 130.39110 * 162.83754 * 18 17 15 20 20 C 1.38106 * 120.21493 * 179.97438 * 19 18 17 21 21 C 1.38255 * 119.93333 * 0.02562 * 20 19 18 22 22 C 1.38101 * 119.93318 * 359.97438 * 21 20 19 23 23 C 1.38215 * 109.75693 * 342.81547 * 18 17 15 24 24 C 1.51369 * 109.76233 * 359.97438 * 23 18 17 25 25 H 1.08996 * 110.30681 * 258.26824 * 24 23 18 26 26 O 1.42903 * 110.30114 * 136.11026 * 24 23 18 27 27 H 0.97001 * 120.00005 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47252 * 59.99525 * 9 7 2 29 29 H 1.09007 * 109.46851 * 299.99933 * 9 7 2 30 30 H 1.09003 * 109.47334 * 60.00102 * 10 9 7 31 31 H 1.08998 * 109.47050 * 299.99401 * 10 9 7 32 32 H 1.09000 * 109.47502 * 60.00203 * 11 10 9 33 33 H 1.09007 * 109.46950 * 299.99767 * 11 10 9 34 34 H 0.96997 * 119.99524 * 359.97438 * 14 12 11 35 35 H 1.08998 * 110.30789 * 263.49261 * 17 15 14 36 36 H 1.09000 * 110.30330 * 25.55037 * 17 15 14 37 37 H 1.08003 * 119.88958 * 359.97438 * 19 18 17 38 38 H 1.07998 * 120.02915 * 180.27290 * 20 19 18 39 39 H 1.08005 * 120.02858 * 179.97438 * 21 20 19 40 40 H 1.08000 * 119.88601 * 179.97438 * 22 21 20 41 41 H 0.96702 * 113.99866 * 61.45963 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0025 12 6 2.4595 -6.1326 0.0044 13 8 3.6519 -5.9109 0.0047 14 7 2.0102 -7.4033 0.0047 15 6 2.9622 -8.5167 0.0071 16 1 3.8738 -8.2462 -0.5259 17 6 3.2778 -8.9657 1.4497 18 6 3.4506 -10.4674 1.3683 19 6 4.0394 -11.3525 2.2560 20 6 4.0816 -12.7022 1.9667 21 6 3.5349 -13.1723 0.7870 22 6 2.9473 -12.2913 -0.0994 23 6 2.9036 -10.9374 0.1892 24 6 2.3253 -9.7840 -0.6023 25 1 1.2415 -9.7543 -0.4906 26 8 2.6797 -9.9021 -1.9816 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8904 30 1 2.8713 -3.6040 0.8923 31 1 2.8725 -3.6048 -0.8877 32 1 0.8540 -5.0455 -0.8877 33 1 0.8532 -5.0441 0.8923 34 1 1.0566 -7.5805 0.0041 35 1 4.1981 -8.4976 1.7988 36 1 2.4507 -8.7142 2.1136 37 1 4.4670 -10.9858 3.1776 38 1 4.5375 -13.3903 2.6632 39 1 3.5674 -14.2275 0.5590 40 1 2.5209 -12.6593 -1.0209 41 1 2.3435 -10.7029 -2.4069 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891091574.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:26 Heat of formation + Delta-G solvation = -77.919314 kcal Electronic energy + Delta-G solvation = -21768.439990 eV Core-core repulsion = 18419.216673 eV Total energy + Delta-G solvation = -3349.223317 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.88435 -39.27072 -37.25614 -35.44354 -34.14205 -33.15210 -31.95891 -31.37184 -28.88720 -27.44100 -26.89956 -24.03501 -22.63407 -21.51868 -21.17300 -20.62779 -19.75527 -17.83618 -17.06496 -16.96910 -16.08869 -15.93005 -15.54896 -15.42816 -15.01313 -14.40266 -14.26149 -13.97068 -13.74708 -13.45268 -13.26168 -12.95863 -12.68179 -12.39232 -12.24415 -12.02359 -11.77187 -11.37414 -11.30882 -11.17879 -10.78560 -10.59037 -10.51764 -10.49465 -9.69168 -9.65318 -9.25372 -9.23649 -9.09697 -8.99737 -8.94230 -8.29885 -5.95700 -3.96877 0.92552 1.00748 2.89458 3.12526 3.34220 3.36513 3.42167 3.47219 3.79550 3.99026 4.33820 4.51275 4.59337 4.61604 4.68955 4.79862 4.89604 5.10438 5.16770 5.23792 5.31638 5.40385 5.43703 5.67528 5.70823 5.73065 5.76387 5.84094 6.02427 6.12406 6.21610 6.28080 6.44931 6.59473 6.75434 6.95760 7.18905 7.23452 7.55854 7.73409 7.86174 8.05205 8.43931 8.49462 9.10261 9.66937 11.15820 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.042449 B = 0.002410 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.463692 B =11614.928133 C =11894.478230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.138 4.138 12 C 0.516 3.484 13 O -0.533 6.533 14 N -0.731 5.731 15 C 0.156 3.844 16 H 0.113 0.887 17 C -0.096 4.096 18 C -0.079 4.079 19 C -0.107 4.107 20 C -0.113 4.113 21 C -0.124 4.124 22 C -0.096 4.096 23 C -0.135 4.135 24 C 0.140 3.860 25 H 0.077 0.923 26 O -0.550 6.550 27 H 0.259 0.741 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.400 0.600 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.120 0.880 41 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.296 -29.311 1.985 29.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.178 4.178 12 C 0.304 3.696 13 O -0.408 6.408 14 N -0.384 5.384 15 C 0.050 3.950 16 H 0.131 0.869 17 C -0.134 4.134 18 C -0.080 4.080 19 C -0.125 4.125 20 C -0.131 4.131 21 C -0.142 4.142 22 C -0.114 4.114 23 C -0.136 4.136 24 C 0.081 3.919 25 H 0.095 0.905 26 O -0.356 6.356 27 H 0.069 0.931 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.235 0.765 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.138 0.862 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 3.317 -28.414 2.100 28.684 hybrid contribution -0.388 0.101 -0.050 0.404 sum 2.930 -28.313 2.050 28.538 Atomic orbital electron populations 1.69966 1.06026 1.26508 1.51279 1.25027 0.94868 0.99258 0.95428 0.86588 0.79890 0.83411 0.78099 1.20681 1.21286 1.19843 1.21276 0.93200 0.91016 1.50040 0.92572 1.19135 0.93974 0.91470 0.97120 1.21451 0.98646 0.91496 1.01735 1.21855 0.98112 0.93968 1.03833 1.21312 0.90484 0.83532 0.74224 1.90685 1.17336 1.84570 1.48249 1.46067 1.09493 1.05449 1.77433 1.21415 0.94461 0.84685 0.94418 0.86901 1.21518 1.03810 0.90652 0.97443 1.20477 0.97151 0.95633 0.94689 1.20694 0.99639 0.92842 0.99365 1.21102 0.99472 0.95242 0.97243 1.21039 0.99015 0.99559 0.94551 1.20530 0.99708 0.91650 0.99540 1.21093 1.00831 0.94555 0.97113 1.21513 0.97722 0.91649 0.81022 0.90531 1.86634 1.79418 1.47170 1.22352 0.93095 0.96596 0.96608 0.92683 0.92658 0.89243 0.89285 0.76540 0.89332 0.89096 0.85849 0.85682 0.85716 0.86224 0.77452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 10 C -0.10 -2.07 4.44 -26.73 -0.12 -2.19 16 11 C -0.14 -2.27 5.70 -27.88 -0.16 -2.43 16 12 C 0.52 8.31 7.83 -10.98 -0.09 8.22 16 13 O -0.53 -10.76 15.62 5.55 0.09 -10.67 16 14 N -0.73 -8.67 5.14 -52.43 -0.27 -8.94 16 15 C 0.16 1.82 3.17 -66.52 -0.21 1.61 16 16 H 0.11 1.65 7.51 -51.92 -0.39 1.26 16 17 C -0.10 -0.99 6.49 -26.85 -0.17 -1.17 16 18 C -0.08 -0.77 6.14 -104.20 -0.64 -1.41 16 19 C -0.11 -0.92 10.04 -39.53 -0.40 -1.32 16 20 C -0.11 -0.83 10.05 -39.62 -0.40 -1.23 16 21 C -0.12 -0.88 10.05 -39.63 -0.40 -1.28 16 22 C -0.10 -0.73 9.93 -39.54 -0.39 -1.13 16 23 C -0.14 -1.24 5.82 -104.21 -0.61 -1.84 16 24 C 0.14 1.30 3.95 -26.84 -0.11 1.19 16 25 H 0.08 0.57 7.80 -51.93 -0.41 0.17 16 26 O -0.55 -5.40 13.36 -35.23 -0.47 -5.87 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 31 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 32 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.40 3.51 8.43 -40.82 -0.34 3.17 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.09 0.86 8.08 -51.93 -0.42 0.44 16 37 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 38 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.12 0.60 8.06 -52.48 -0.42 0.18 16 40 H 0.12 0.62 8.06 -52.49 -0.42 0.19 16 41 H 0.38 1.98 9.01 45.56 0.41 2.39 16 LS Contribution 347.43 15.07 5.24 5.24 Total: -1.00 -35.40 347.43 -9.27 -44.67 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.34 Total: 1.39 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -4.24 Total: -16.48 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 0.47 Total: -35.45 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.38 Total: -16.54 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.40 -9.27 -44.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891091574.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.250 kcal (2) G-P(sol) polarization free energy of solvation -35.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds