Wall clock time and date at job start Tue Mar 31 2020 06:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00069 * 2 1 4 4 H 1.48505 * 109.46855 * 269.99939 * 3 2 1 5 5 H 1.48499 * 109.47165 * 29.99762 * 3 2 1 6 6 H 1.48499 * 109.47185 * 150.00103 * 3 2 1 7 7 C 1.37879 * 119.99638 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99405 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00391 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47038 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46845 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.47314 * 180.02562 * 11 10 9 13 13 O 1.21285 * 119.99477 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00445 * 180.02562 * 12 11 10 15 15 C 1.46491 * 119.99981 * 180.02562 * 14 12 11 16 16 H 1.09008 * 110.73154 * 328.39861 * 15 14 12 17 17 C 1.54343 * 110.82691 * 92.02399 * 15 14 12 18 18 C 1.51377 * 105.17087 * 144.56859 * 17 15 14 19 19 C 1.38495 * 130.39110 * 162.83754 * 18 17 15 20 20 C 1.38106 * 120.21493 * 179.97438 * 19 18 17 21 21 C 1.38255 * 119.93333 * 0.02562 * 20 19 18 22 22 C 1.38101 * 119.93318 * 359.97438 * 21 20 19 23 23 C 1.38215 * 109.75693 * 342.81547 * 18 17 15 24 24 C 1.51369 * 109.76233 * 359.97438 * 23 18 17 25 25 H 1.08996 * 110.30681 * 258.26824 * 24 23 18 26 26 O 1.42903 * 110.30114 * 136.11026 * 24 23 18 27 27 H 0.97001 * 120.00005 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47252 * 59.99525 * 9 7 2 29 29 H 1.09007 * 109.46851 * 299.99933 * 9 7 2 30 30 H 1.09003 * 109.47334 * 60.00102 * 10 9 7 31 31 H 1.08998 * 109.47050 * 299.99401 * 10 9 7 32 32 H 1.09000 * 109.47502 * 60.00203 * 11 10 9 33 33 H 1.09007 * 109.46950 * 299.99767 * 11 10 9 34 34 H 0.96997 * 119.99524 * 359.97438 * 14 12 11 35 35 H 1.08998 * 110.30789 * 263.49261 * 17 15 14 36 36 H 1.09000 * 110.30330 * 25.55037 * 17 15 14 37 37 H 1.08003 * 119.88958 * 359.97438 * 19 18 17 38 38 H 1.07998 * 120.02915 * 180.27290 * 20 19 18 39 39 H 1.08005 * 120.02858 * 179.97438 * 21 20 19 40 40 H 1.08000 * 119.88601 * 179.97438 * 22 21 20 41 41 H 0.96702 * 113.99866 * 61.45963 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0025 12 6 2.4595 -6.1326 0.0044 13 8 3.6519 -5.9109 0.0047 14 7 2.0102 -7.4033 0.0047 15 6 2.9622 -8.5167 0.0071 16 1 3.8738 -8.2462 -0.5259 17 6 3.2778 -8.9657 1.4497 18 6 3.4506 -10.4674 1.3683 19 6 4.0394 -11.3525 2.2560 20 6 4.0816 -12.7022 1.9667 21 6 3.5349 -13.1723 0.7870 22 6 2.9473 -12.2913 -0.0994 23 6 2.9036 -10.9374 0.1892 24 6 2.3253 -9.7840 -0.6023 25 1 1.2415 -9.7543 -0.4906 26 8 2.6797 -9.9021 -1.9816 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8904 30 1 2.8713 -3.6040 0.8923 31 1 2.8725 -3.6048 -0.8877 32 1 0.8540 -5.0455 -0.8877 33 1 0.8532 -5.0441 0.8923 34 1 1.0566 -7.5805 0.0041 35 1 4.1981 -8.4976 1.7988 36 1 2.4507 -8.7142 2.1136 37 1 4.4670 -10.9858 3.1776 38 1 4.5375 -13.3903 2.6632 39 1 3.5674 -14.2275 0.5590 40 1 2.5209 -12.6593 -1.0209 41 1 2.3435 -10.7029 -2.4069 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891091574.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:26 Heat of formation + Delta-G solvation = -102.752278 kcal Electronic energy + Delta-G solvation = -21769.516828 eV Core-core repulsion = 18419.216673 eV Total energy + Delta-G solvation = -3350.300155 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.67590 -40.42811 -37.99499 -36.41504 -36.01351 -34.24028 -33.83025 -31.96429 -30.20004 -28.79340 -27.64282 -25.83746 -23.57570 -22.40066 -22.09621 -21.81145 -21.24635 -18.69196 -18.54316 -17.92563 -17.69318 -16.80706 -16.64772 -16.50787 -16.24752 -15.90647 -15.17547 -15.01140 -14.71548 -14.63271 -14.26691 -14.02311 -13.78285 -13.74216 -13.56032 -13.22333 -13.04542 -12.68687 -12.58745 -12.51332 -12.39739 -12.07987 -11.83991 -11.54883 -11.46986 -11.27500 -11.17180 -10.78368 -10.53904 -10.23358 -9.78680 -9.57431 -8.20004 -6.29675 0.32295 0.41810 1.39591 1.40715 1.52283 1.61397 2.05384 2.42051 2.74441 3.10643 3.12864 3.27516 3.61964 3.88634 3.90392 3.97934 4.10337 4.12754 4.23755 4.25553 4.28826 4.43630 4.59481 4.72232 4.75270 4.75670 4.91230 4.98227 5.01963 5.11263 5.13072 5.19990 5.38257 5.49808 5.55261 5.56858 5.59130 5.76468 5.87631 6.03713 6.28133 6.50395 6.76340 6.85682 7.24017 7.38758 8.91475 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.042449 B = 0.002410 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.463692 B =11614.928133 C =11894.478230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.002 3.998 3 Si 0.962 3.038 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.547 4.547 8 H 0.050 0.950 9 C 0.026 3.974 10 C -0.083 4.083 11 C -0.129 4.129 12 C 0.519 3.481 13 O -0.582 6.582 14 N -0.709 5.709 15 C 0.150 3.850 16 H 0.077 0.923 17 C -0.090 4.090 18 C -0.101 4.101 19 C -0.122 4.122 20 C -0.116 4.116 21 C -0.125 4.125 22 C -0.100 4.100 23 C -0.146 4.146 24 C 0.150 3.850 25 H 0.101 0.899 26 O -0.571 6.571 27 H 0.265 0.735 28 H 0.001 0.999 29 H 0.003 0.997 30 H 0.041 0.959 31 H 0.038 0.962 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.419 0.581 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.130 0.870 38 H 0.147 0.853 39 H 0.151 0.849 40 H 0.146 0.854 41 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.718 -31.154 1.944 31.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.585 4.585 8 H 0.068 0.932 9 C -0.011 4.011 10 C -0.121 4.121 11 C -0.168 4.168 12 C 0.308 3.692 13 O -0.461 6.461 14 N -0.362 5.362 15 C 0.044 3.956 16 H 0.095 0.905 17 C -0.128 4.128 18 C -0.101 4.101 19 C -0.140 4.140 20 C -0.134 4.134 21 C -0.143 4.143 22 C -0.118 4.118 23 C -0.147 4.147 24 C 0.091 3.909 25 H 0.118 0.882 26 O -0.380 6.380 27 H 0.073 0.927 28 H 0.020 0.980 29 H 0.021 0.979 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.257 0.743 35 H 0.089 0.911 36 H 0.117 0.883 37 H 0.148 0.852 38 H 0.165 0.835 39 H 0.169 0.831 40 H 0.163 0.837 41 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 2.696 -30.315 2.052 30.504 hybrid contribution -0.210 0.583 -0.046 0.621 sum 2.486 -29.732 2.006 29.903 Atomic orbital electron populations 1.70065 1.07444 1.27772 1.51607 1.25909 0.95856 1.03054 0.94735 0.85501 0.78620 0.78731 0.78529 1.19749 1.20235 1.19339 1.21692 0.93315 0.92861 1.50667 0.93159 1.19021 0.94190 0.92298 0.95610 1.21168 0.97661 0.93057 1.00254 1.21687 0.97805 0.91334 1.06006 1.21142 0.89485 0.84689 0.73896 1.90674 1.19165 1.85386 1.50876 1.45780 1.10682 1.04220 1.75474 1.21411 0.93325 0.85467 0.95385 0.90459 1.21386 1.03280 0.91596 0.96548 1.20509 0.98707 0.95075 0.95835 1.20916 0.99844 0.93526 0.99684 1.21440 0.99065 0.94997 0.97915 1.21436 0.97934 1.00896 0.94054 1.20878 0.99337 0.90959 1.00622 1.21161 1.01418 0.95298 0.96813 1.21377 0.98615 0.90158 0.80787 0.88170 1.86587 1.80013 1.48765 1.22628 0.92660 0.98033 0.97889 0.94052 0.94288 0.87243 0.86911 0.74318 0.91095 0.88267 0.85166 0.83482 0.83108 0.83665 0.75146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.66 13.29 21.45 0.28 -56.37 16 2 C 0.00 0.14 5.46 84.65 0.46 0.60 16 3 Si 0.96 45.64 29.54 68.60 2.03 47.66 16 4 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.55 -32.55 9.11 25.60 0.23 -32.32 16 8 H 0.05 2.97 7.74 -2.91 -0.02 2.94 16 9 C 0.03 1.38 4.97 29.85 0.15 1.53 16 10 C -0.08 -3.71 4.44 30.59 0.14 -3.57 16 11 C -0.13 -4.16 5.70 29.85 0.17 -3.99 16 12 C 0.52 16.75 7.83 87.66 0.69 17.43 16 13 O -0.58 -24.34 15.62 -3.05 -0.05 -24.39 16 14 N -0.71 -16.23 5.14 -438.18 -2.25 -18.48 16 15 C 0.15 3.50 3.17 45.91 0.15 3.64 16 16 H 0.08 2.40 7.51 -2.38 -0.02 2.38 16 17 C -0.09 -1.88 6.49 30.52 0.20 -1.69 16 18 C -0.10 -1.91 6.14 -19.59 -0.12 -2.03 16 19 C -0.12 -1.98 10.04 22.30 0.22 -1.76 16 20 C -0.12 -1.47 10.05 22.24 0.22 -1.25 16 21 C -0.13 -1.42 10.05 22.24 0.22 -1.20 16 22 C -0.10 -1.26 9.93 22.30 0.22 -1.04 16 23 C -0.15 -2.45 5.82 -19.60 -0.11 -2.57 16 24 C 0.15 2.56 3.95 30.53 0.12 2.68 16 25 H 0.10 1.22 7.80 -2.39 -0.02 1.20 16 26 O -0.57 -10.39 13.36 -148.98 -1.99 -12.38 16 27 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 28 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 29 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 30 H 0.04 1.92 8.10 -2.39 -0.02 1.90 16 31 H 0.04 1.83 8.10 -2.39 -0.02 1.81 16 32 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 33 H 0.11 3.13 8.14 -2.38 -0.02 3.11 16 34 H 0.42 6.45 8.43 -92.71 -0.78 5.67 16 35 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.10 1.84 8.08 -2.39 -0.02 1.82 16 37 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 38 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 39 H 0.15 0.87 8.06 -2.91 -0.02 0.85 16 40 H 0.15 0.99 8.06 -2.91 -0.02 0.96 16 41 H 0.40 3.28 9.01 -74.06 -0.67 2.61 16 Total: -1.00 -78.08 347.43 0.57 -77.51 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -0.41 Total: 11.98 kcal Atomic # 6 Polarization: -28.49 SS G_CDS: 2.96 Total: -25.53 kcal Atomic # 7 Polarization: -72.89 SS G_CDS: -1.97 Total: -74.85 kcal Atomic # 8 Polarization: -34.73 SS G_CDS: -2.04 Total: -36.77 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -78.08 0.57 -77.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891091574.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.245 kcal (2) G-P(sol) polarization free energy of solvation -78.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds