Wall clock time and date at job start Tue Mar 31 2020 06:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00243 * 2 1 4 4 H 1.48495 * 109.47283 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47072 * 299.99966 * 3 2 1 6 6 H 1.48503 * 109.47197 * 59.99552 * 3 2 1 7 7 C 1.37880 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00063 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00224 * 359.97438 * 7 2 1 10 10 O 1.42900 * 110.87358 * 62.38880 * 9 7 2 11 11 C 1.55147 * 110.98740 * 298.55071 * 9 7 2 12 12 C 1.54321 * 103.01469 * 206.21779 * 11 9 7 13 13 N 1.47439 * 107.23713 * 22.28151 * 12 11 9 14 14 C 1.46893 * 111.00357 * 123.25923 * 13 12 11 15 15 C 1.50706 * 109.47176 * 69.87223 * 14 13 12 16 16 C 1.37969 * 119.88379 * 260.00442 * 15 14 13 17 17 C 1.38243 * 120.35399 * 180.02562 * 16 15 14 18 18 C 1.38397 * 119.76482 * 359.79214 * 17 16 15 19 19 C 1.37697 * 119.97773 * 359.97438 * 18 17 16 20 20 C 1.38921 * 120.78444 * 0.12484 * 19 18 17 21 21 O 1.36139 * 111.21165 * 179.27306 * 20 19 18 22 22 C 1.43787 * 109.20090 * 19.60543 * 21 20 19 23 23 C 1.51646 * 132.17765 * 180.90958 * 19 18 17 24 24 C 1.47847 * 108.56732 * 0.99025 * 13 12 11 25 25 H 0.96997 * 119.99606 * 0.02562 * 1 2 3 26 26 H 0.96698 * 114.00016 * 297.61453 * 10 9 7 27 27 H 1.08999 * 110.70703 * 87.83517 * 11 9 7 28 28 H 1.08998 * 110.85365 * 324.66182 * 11 9 7 29 29 H 1.09005 * 109.88495 * 262.87667 * 12 11 9 30 30 H 1.08998 * 109.89238 * 141.68972 * 12 11 9 31 31 H 1.09001 * 109.46739 * 309.87631 * 14 13 12 32 32 H 1.09000 * 109.47767 * 189.87890 * 14 13 12 33 33 H 1.08006 * 119.82301 * 0.02562 * 16 15 14 34 34 H 1.07995 * 120.11778 * 179.77188 * 17 16 15 35 35 H 1.07997 * 120.01244 * 180.02562 * 18 17 16 36 36 H 1.09002 * 110.74978 * 90.41978 * 22 21 20 37 37 H 1.08995 * 110.74573 * 213.59221 * 22 21 20 38 38 H 1.09005 * 110.92924 * 282.54611 * 23 19 18 39 39 H 1.08999 * 110.93572 * 46.21864 * 23 19 18 40 40 H 1.08995 * 110.37157 * 94.73369 * 24 13 12 41 41 H 1.08996 * 110.37604 * 217.07951 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 8 0.4601 -2.6305 -1.1834 11 6 0.3742 -2.6346 1.2722 12 6 0.2533 -4.1627 1.4500 13 7 1.3911 -4.7764 0.7409 14 6 2.1850 -5.6167 1.6473 15 6 1.3937 -6.8453 2.0156 16 6 0.7365 -6.9019 3.2274 17 6 0.0083 -8.0243 3.5754 18 6 -0.0646 -9.0944 2.7009 19 6 0.5865 -9.0380 1.4889 20 6 1.3230 -7.9165 1.1289 21 8 1.8950 -8.0752 -0.0963 22 6 1.2050 -9.1160 -0.8090 23 6 0.6786 -10.0188 0.3360 24 6 2.2180 -3.6992 0.1566 25 1 -0.4849 0.8401 -0.0004 26 1 -0.2254 -1.9547 -1.2751 27 1 -0.6066 -2.1862 1.1139 28 1 0.8679 -2.1843 2.1333 29 1 -0.6847 -4.5131 1.0192 30 1 0.2955 -4.4174 2.5090 31 1 2.4228 -5.0536 2.5498 32 1 3.1086 -5.9146 1.1510 33 1 0.7913 -6.0649 3.9078 34 1 -0.5016 -8.0660 4.5265 35 1 -0.6327 -9.9730 2.9685 36 1 0.3835 -8.7037 -1.3949 37 1 1.8938 -9.6686 -1.4479 38 1 1.3784 -10.8229 0.5637 39 1 -0.3039 -10.4188 0.0854 40 1 3.0362 -3.4417 0.8291 41 1 2.6061 -4.0035 -0.8155 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895106722.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:36 Heat of formation + Delta-G solvation = -47.292546 kcal Electronic energy + Delta-G solvation = -23358.091378 eV Core-core repulsion = 20010.196137 eV Total energy + Delta-G solvation = -3347.895241 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.00036 -38.45272 -37.24264 -34.83244 -32.76545 -32.09076 -30.87085 -29.24163 -28.83234 -27.94973 -25.48823 -23.96244 -23.20485 -22.03092 -20.87277 -19.69704 -19.46747 -17.25313 -16.98370 -16.42533 -16.10703 -15.38586 -15.09335 -14.85392 -14.58155 -14.02650 -13.85484 -13.51118 -13.18050 -13.01170 -12.66090 -12.33861 -12.29882 -12.14940 -11.70578 -11.69041 -11.47584 -11.21434 -11.09282 -10.97296 -10.78924 -10.74117 -10.47059 -10.36528 -10.19442 -9.78185 -9.15040 -8.68544 -8.55677 -8.03114 -7.95211 -7.48533 -6.17636 -4.25634 1.35749 1.47886 3.22714 3.31406 3.35808 3.39223 3.78880 4.32362 4.39334 4.56116 4.82669 4.87648 4.98992 5.08683 5.15333 5.25868 5.38261 5.42530 5.53167 5.63959 5.68321 5.78091 5.79188 5.92502 6.05552 6.14839 6.20530 6.25155 6.42227 6.49396 6.53414 6.62601 6.74526 6.75774 6.94760 7.14384 7.32763 7.47033 7.54419 7.73464 7.84033 7.89028 8.22456 8.77143 9.43064 9.57528 10.89260 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029827 B = 0.003953 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.506685 B = 7081.274262 C = 7463.545688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.071 3.929 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.535 4.535 8 H 0.061 0.939 9 C 0.252 3.748 10 O -0.578 6.578 11 C -0.144 4.144 12 C 0.045 3.955 13 N -0.518 5.518 14 C 0.092 3.908 15 C -0.085 4.085 16 C -0.081 4.081 17 C -0.152 4.152 18 C -0.077 4.077 19 C -0.185 4.185 20 C 0.133 3.867 21 O -0.293 6.293 22 C 0.051 3.949 23 C -0.108 4.108 24 C 0.060 3.940 25 H 0.265 0.735 26 H 0.376 0.624 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.036 0.964 31 H 0.039 0.961 32 H 0.077 0.923 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.046 0.954 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.341 -17.331 4.930 18.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.131 4.131 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.573 4.573 8 H 0.079 0.921 9 C 0.212 3.788 10 O -0.386 6.386 11 C -0.183 4.183 12 C -0.082 4.082 13 N -0.242 5.242 14 C -0.036 4.036 15 C -0.086 4.086 16 C -0.099 4.099 17 C -0.170 4.170 18 C -0.095 4.095 19 C -0.185 4.185 20 C 0.086 3.914 21 O -0.207 6.207 22 C -0.024 4.024 23 C -0.145 4.145 24 C -0.067 4.067 25 H 0.075 0.925 26 H 0.225 0.775 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.137 0.863 36 H 0.096 0.904 37 H 0.120 0.880 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.064 0.936 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.077 -17.938 4.316 18.450 hybrid contribution 0.150 1.790 0.846 1.986 sum 0.074 -16.147 5.162 16.953 Atomic orbital electron populations 1.69755 1.05930 1.27190 1.50546 1.24997 0.94963 0.99367 0.93759 0.86439 0.80174 0.83141 0.77637 1.19687 1.20808 1.20951 1.21602 0.93581 0.90739 1.51402 0.92080 1.19530 0.86849 0.90553 0.81906 1.86153 1.51313 1.56608 1.44525 1.23253 1.02572 0.91968 1.00504 1.22838 0.94349 0.95910 0.95122 1.63615 1.08762 1.21099 1.30738 1.21075 0.95493 0.91460 0.95567 1.19120 1.02004 0.93791 0.93677 1.20836 0.95821 0.97995 0.95264 1.20931 1.01971 0.94087 1.00018 1.20195 0.98399 0.98642 0.92258 1.20758 1.04272 0.95938 0.97578 1.19273 0.92846 0.93149 0.86083 1.86893 1.52585 1.55774 1.25411 1.23865 0.97184 0.86993 0.94350 1.21811 1.02708 0.97542 0.92408 1.22988 0.95107 0.90270 0.98343 0.92498 0.77538 0.90553 0.92734 0.92069 0.94556 0.94285 0.90469 0.85491 0.85770 0.86279 0.90379 0.87985 0.89516 0.89492 0.93607 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.20 10.75 55.43 0.60 -23.60 16 2 C 0.07 1.91 5.29 -17.82 -0.09 1.82 16 3 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.53 -14.59 8.27 -34.44 -0.28 -14.88 16 8 H 0.06 1.66 7.79 -52.48 -0.41 1.25 16 9 C 0.25 6.44 0.87 -89.63 -0.08 6.36 16 10 O -0.58 -15.64 13.16 -35.23 -0.46 -16.11 16 11 C -0.14 -3.41 5.37 -24.90 -0.13 -3.54 16 12 C 0.05 0.94 6.39 -2.84 -0.02 0.92 16 13 N -0.52 -10.75 5.15 -232.69 -1.20 -11.95 16 14 C 0.09 1.62 4.67 -4.98 -0.02 1.59 16 15 C -0.08 -1.36 4.97 -104.34 -0.52 -1.88 16 16 C -0.08 -1.11 8.79 -39.68 -0.35 -1.46 16 17 C -0.15 -1.81 10.07 -39.52 -0.40 -2.21 16 18 C -0.08 -0.90 10.03 -39.72 -0.40 -1.30 16 19 C -0.18 -2.42 6.27 -104.10 -0.65 -3.07 16 20 C 0.13 2.09 6.75 -38.96 -0.26 1.83 16 21 O -0.29 -4.68 11.05 -20.18 -0.22 -4.90 16 22 C 0.05 0.58 8.02 38.22 0.31 0.88 16 23 C -0.11 -1.07 7.13 -26.35 -0.19 -1.26 16 24 C 0.06 1.37 5.86 -2.30 -0.01 1.35 16 25 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 26 H 0.38 10.16 7.56 45.56 0.34 10.51 16 27 H 0.08 1.92 7.53 -51.93 -0.39 1.52 16 28 H 0.05 1.31 8.04 -51.93 -0.42 0.89 16 29 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.04 0.67 6.18 -51.93 -0.32 0.35 16 31 H 0.04 0.65 7.81 -51.93 -0.41 0.25 16 32 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 33 H 0.13 1.59 7.62 -52.48 -0.40 1.19 16 34 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 35 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.05 1.00 7.70 -51.93 -0.40 0.60 16 41 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 LS Contribution 331.30 15.07 4.99 4.99 Total: -1.00 -29.99 331.30 -9.76 -39.75 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -5.34 Total: 10.82 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -3.11 Total: -14.84 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: -0.60 Total: -35.55 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.69 Total: -21.01 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.99 -9.76 -39.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895106722.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.543 kcal (2) G-P(sol) polarization free energy of solvation -29.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds