Wall clock time and date at job start Tue Mar 31 2020 06:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00243 * 2 1 4 4 H 1.48495 * 109.47283 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47072 * 299.99966 * 3 2 1 6 6 H 1.48503 * 109.47197 * 59.99552 * 3 2 1 7 7 C 1.37880 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00063 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00224 * 359.97438 * 7 2 1 10 10 O 1.42900 * 110.87358 * 62.38880 * 9 7 2 11 11 C 1.55147 * 110.98740 * 298.55071 * 9 7 2 12 12 C 1.54321 * 103.01469 * 206.21779 * 11 9 7 13 13 N 1.47439 * 107.23713 * 22.28151 * 12 11 9 14 14 C 1.46893 * 111.00357 * 123.25923 * 13 12 11 15 15 C 1.50706 * 109.47176 * 69.87223 * 14 13 12 16 16 C 1.37969 * 119.88379 * 260.00442 * 15 14 13 17 17 C 1.38243 * 120.35399 * 180.02562 * 16 15 14 18 18 C 1.38397 * 119.76482 * 359.79214 * 17 16 15 19 19 C 1.37697 * 119.97773 * 359.97438 * 18 17 16 20 20 C 1.38921 * 120.78444 * 0.12484 * 19 18 17 21 21 O 1.36139 * 111.21165 * 179.27306 * 20 19 18 22 22 C 1.43787 * 109.20090 * 19.60543 * 21 20 19 23 23 C 1.51646 * 132.17765 * 180.90958 * 19 18 17 24 24 C 1.47847 * 108.56732 * 0.99025 * 13 12 11 25 25 H 0.96997 * 119.99606 * 0.02562 * 1 2 3 26 26 H 0.96698 * 114.00016 * 297.61453 * 10 9 7 27 27 H 1.08999 * 110.70703 * 87.83517 * 11 9 7 28 28 H 1.08998 * 110.85365 * 324.66182 * 11 9 7 29 29 H 1.09005 * 109.88495 * 262.87667 * 12 11 9 30 30 H 1.08998 * 109.89238 * 141.68972 * 12 11 9 31 31 H 1.09001 * 109.46739 * 309.87631 * 14 13 12 32 32 H 1.09000 * 109.47767 * 189.87890 * 14 13 12 33 33 H 1.08006 * 119.82301 * 0.02562 * 16 15 14 34 34 H 1.07995 * 120.11778 * 179.77188 * 17 16 15 35 35 H 1.07997 * 120.01244 * 180.02562 * 18 17 16 36 36 H 1.09002 * 110.74978 * 90.41978 * 22 21 20 37 37 H 1.08995 * 110.74573 * 213.59221 * 22 21 20 38 38 H 1.09005 * 110.92924 * 282.54611 * 23 19 18 39 39 H 1.08999 * 110.93572 * 46.21864 * 23 19 18 40 40 H 1.08995 * 110.37157 * 94.73369 * 24 13 12 41 41 H 1.08996 * 110.37604 * 217.07951 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 8 0.4601 -2.6305 -1.1834 11 6 0.3742 -2.6346 1.2722 12 6 0.2533 -4.1627 1.4500 13 7 1.3911 -4.7764 0.7409 14 6 2.1850 -5.6167 1.6473 15 6 1.3937 -6.8453 2.0156 16 6 0.7365 -6.9019 3.2274 17 6 0.0083 -8.0243 3.5754 18 6 -0.0646 -9.0944 2.7009 19 6 0.5865 -9.0380 1.4889 20 6 1.3230 -7.9165 1.1289 21 8 1.8950 -8.0752 -0.0963 22 6 1.2050 -9.1160 -0.8090 23 6 0.6786 -10.0188 0.3360 24 6 2.2180 -3.6992 0.1566 25 1 -0.4849 0.8401 -0.0004 26 1 -0.2254 -1.9547 -1.2751 27 1 -0.6066 -2.1862 1.1139 28 1 0.8679 -2.1843 2.1333 29 1 -0.6847 -4.5131 1.0192 30 1 0.2955 -4.4174 2.5090 31 1 2.4228 -5.0536 2.5498 32 1 3.1086 -5.9146 1.1510 33 1 0.7913 -6.0649 3.9078 34 1 -0.5016 -8.0660 4.5265 35 1 -0.6327 -9.9730 2.9685 36 1 0.3835 -8.7037 -1.3949 37 1 1.8938 -9.6686 -1.4479 38 1 1.3784 -10.8229 0.5637 39 1 -0.3039 -10.4188 0.0854 40 1 3.0362 -3.4417 0.8291 41 1 2.6061 -4.0035 -0.8155 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895106722.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:35 Heat of formation + Delta-G solvation = -67.950318 kcal Electronic energy + Delta-G solvation = -23358.987166 eV Core-core repulsion = 20010.196137 eV Total energy + Delta-G solvation = -3348.791029 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.99758 -40.14649 -38.38319 -36.59695 -34.19769 -33.95519 -32.11041 -30.41886 -30.17992 -29.74716 -27.12835 -25.65201 -24.14190 -23.08655 -22.13050 -21.42458 -21.16434 -19.02429 -18.23714 -17.50715 -17.07088 -16.93164 -16.80544 -16.48976 -16.13152 -15.77383 -15.14033 -14.74992 -14.45519 -14.10670 -13.96422 -13.86420 -13.75570 -13.49137 -13.28937 -13.13746 -12.90259 -12.84197 -12.62983 -12.50942 -12.29150 -12.22045 -12.21113 -11.72118 -11.67462 -11.56740 -11.10173 -10.61831 -10.10388 -9.66893 -9.15035 -8.97512 -8.22297 -6.38610 0.35984 0.46714 1.38418 1.41663 1.52558 2.37457 2.45259 2.75920 3.01954 3.31456 3.54935 3.66115 3.86149 3.96964 4.06786 4.11762 4.17223 4.22204 4.35267 4.40963 4.44912 4.52492 4.60092 4.66008 4.72157 4.76952 4.88446 4.91495 4.94234 5.05093 5.17033 5.25328 5.45785 5.47505 5.50367 5.53372 5.59243 5.78802 5.79581 5.97038 6.20770 6.28228 6.34534 6.67200 7.33029 7.44438 8.83325 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029827 B = 0.003953 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.506685 B = 7081.274262 C = 7463.545688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.032 3.968 3 Si 0.961 3.039 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.276 1.276 7 C -0.563 4.563 8 H 0.053 0.947 9 C 0.236 3.764 10 O -0.589 6.589 11 C -0.133 4.133 12 C 0.059 3.941 13 N -0.526 5.526 14 C 0.096 3.904 15 C -0.112 4.112 16 C -0.091 4.091 17 C -0.147 4.147 18 C -0.074 4.074 19 C -0.190 4.190 20 C 0.101 3.899 21 O -0.327 6.327 22 C 0.041 3.959 23 C -0.098 4.098 24 C 0.068 3.932 25 H 0.269 0.731 26 H 0.371 0.629 27 H 0.057 0.943 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.136 0.864 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.072 0.928 37 H 0.127 0.873 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.051 0.949 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.837 -18.905 6.229 19.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.169 4.169 3 Si 0.786 3.214 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.601 4.601 8 H 0.072 0.928 9 C 0.196 3.804 10 O -0.396 6.396 11 C -0.172 4.172 12 C -0.069 4.069 13 N -0.250 5.250 14 C -0.031 4.031 15 C -0.113 4.113 16 C -0.109 4.109 17 C -0.165 4.165 18 C -0.092 4.092 19 C -0.191 4.191 20 C 0.055 3.945 21 O -0.242 6.242 22 C -0.034 4.034 23 C -0.135 4.135 24 C -0.060 4.060 25 H 0.078 0.922 26 H 0.219 0.781 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.154 0.846 34 H 0.173 0.827 35 H 0.171 0.829 36 H 0.090 0.910 37 H 0.145 0.855 38 H 0.124 0.876 39 H 0.128 0.872 40 H 0.069 0.931 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.574 -19.533 5.620 20.333 hybrid contribution 0.280 2.213 0.433 2.272 sum -0.294 -17.320 6.053 18.349 Atomic orbital electron populations 1.69838 1.06863 1.28081 1.50183 1.25693 0.95824 1.02246 0.93140 0.85470 0.78880 0.79209 0.77805 1.19602 1.20436 1.20151 1.21836 0.93484 0.92124 1.52650 0.92826 1.19771 0.87440 0.91187 0.82006 1.86146 1.51377 1.56455 1.45659 1.23046 1.00892 0.94008 0.99266 1.22680 0.94096 0.93519 0.96594 1.63546 1.08939 1.20300 1.32180 1.21045 0.95246 0.91873 0.94945 1.19126 1.03607 0.93389 0.95192 1.21025 0.95966 0.99264 0.94659 1.21326 1.00869 0.93187 1.01139 1.20647 0.97575 0.99610 0.91392 1.21206 1.03307 0.95771 0.98777 1.19601 0.94156 0.94359 0.86371 1.86839 1.53798 1.57466 1.26055 1.24157 0.97628 0.86618 0.94960 1.21867 1.04339 0.96955 0.90341 1.22820 0.94949 0.90079 0.98132 0.92180 0.78054 0.92430 0.93469 0.92810 0.91994 0.93527 0.91208 0.84642 0.82732 0.82925 0.90959 0.85545 0.87609 0.87236 0.93106 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.67 10.75 21.45 0.23 -49.44 16 2 C 0.03 1.71 5.29 84.66 0.45 2.16 16 3 Si 0.96 42.85 29.54 68.60 2.03 44.87 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.56 -31.29 8.27 25.60 0.21 -31.08 16 8 H 0.05 2.98 7.79 -2.91 -0.02 2.95 16 9 C 0.24 12.35 0.87 -10.15 -0.01 12.35 16 10 O -0.59 -32.84 13.16 -148.98 -1.96 -34.80 16 11 C -0.13 -6.41 5.37 31.78 0.17 -6.23 16 12 C 0.06 2.43 6.39 86.65 0.55 2.98 16 13 N -0.53 -22.10 5.15 -890.11 -4.58 -26.68 16 14 C 0.10 3.41 4.67 85.56 0.40 3.81 16 15 C -0.11 -3.54 4.97 -19.68 -0.10 -3.64 16 16 C -0.09 -2.35 8.79 22.21 0.20 -2.15 16 17 C -0.15 -3.05 10.07 22.31 0.22 -2.83 16 18 C -0.07 -1.49 10.03 22.18 0.22 -1.27 16 19 C -0.19 -4.56 6.27 -19.53 -0.12 -4.68 16 20 C 0.10 3.14 6.75 22.67 0.15 3.29 16 21 O -0.33 -10.51 11.05 -95.13 -1.05 -11.56 16 22 C 0.04 0.87 8.02 72.67 0.58 1.46 16 23 C -0.10 -1.69 7.13 30.84 0.22 -1.47 16 24 C 0.07 3.17 5.86 86.77 0.51 3.68 16 25 H 0.27 13.88 8.31 -92.71 -0.77 13.10 16 26 H 0.37 20.77 7.56 -74.06 -0.56 20.21 16 27 H 0.06 2.95 7.53 -2.39 -0.02 2.93 16 28 H 0.05 2.29 8.04 -2.39 -0.02 2.27 16 29 H 0.05 2.30 8.14 -2.38 -0.02 2.28 16 30 H 0.06 2.23 6.18 -2.39 -0.01 2.21 16 31 H 0.05 1.55 7.81 -2.39 -0.02 1.53 16 32 H 0.07 2.51 8.07 -2.39 -0.02 2.49 16 33 H 0.14 3.14 7.62 -2.91 -0.02 3.12 16 34 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 35 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.05 2.29 7.70 -2.39 -0.02 2.27 16 41 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -65.44 331.30 -1.20 -66.64 By element: Atomic # 1 Polarization: 34.11 SS G_CDS: 0.47 Total: 34.58 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: 3.66 Total: -23.62 kcal Atomic # 7 Polarization: -71.77 SS G_CDS: -4.35 Total: -76.13 kcal Atomic # 8 Polarization: -43.34 SS G_CDS: -3.01 Total: -46.35 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -65.44 -1.20 -66.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895106722.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.309 kcal (2) G-P(sol) polarization free energy of solvation -65.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds