Wall clock time and date at job start Tue Mar 31 2020 05:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33169 * 119.99837 * 2 1 4 4 F 1.35103 * 119.99772 * 172.50399 * 3 2 1 5 5 C 1.47224 * 119.99870 * 352.22875 * 3 2 1 6 6 O 1.21620 * 120.00461 * 353.17712 * 5 3 2 7 7 N 1.34784 * 120.00097 * 173.17543 * 5 3 2 8 8 C 1.39090 * 120.00067 * 185.25959 * 7 5 3 9 9 C 1.39518 * 119.83990 * 323.50613 * 8 7 5 10 10 C 1.36357 * 120.16619 * 179.72164 * 9 8 7 11 11 C 1.40881 * 119.83183 * 0.54779 * 10 9 8 12 12 C 1.41132 * 120.16007 * 179.70128 * 11 10 9 13 13 H 1.07995 * 119.99599 * 209.90798 * 12 11 10 14 14 C 1.39908 * 120.00012 * 29.90764 * 12 11 10 15 15 N 1.30872 * 120.00026 * 9.51839 * 14 12 11 16 16 Si 1.86801 * 119.99906 * 189.51639 * 14 12 11 17 17 H 1.48500 * 109.47231 * 60.00259 * 16 14 12 18 18 H 1.48504 * 109.47120 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47377 * 300.00207 * 16 14 12 20 20 C 1.40884 * 119.67825 * 359.72414 * 11 10 9 21 21 C 1.36359 * 119.82804 * 359.97438 * 20 11 10 22 22 C 1.50700 * 120.00235 * 179.97438 * 2 1 3 23 23 C 1.53002 * 117.49593 * 8.62431 * 22 2 1 24 24 C 1.53002 * 60.00087 * 252.50887 * 23 22 2 25 25 H 1.09002 * 109.46992 * 84.20523 * 1 2 3 26 26 H 1.09001 * 109.47003 * 204.20026 * 1 2 3 27 27 H 1.08997 * 109.47321 * 324.19973 * 1 2 3 28 28 H 0.97000 * 119.99518 * 5.25622 * 7 5 3 29 29 H 1.07997 * 119.91487 * 359.97140 * 9 8 7 30 30 H 1.08005 * 120.08278 * 180.27185 * 10 9 8 31 31 H 0.97006 * 119.99656 * 179.97438 * 15 14 12 32 32 H 1.07999 * 120.08305 * 179.97438 * 20 11 10 33 33 H 1.08005 * 119.91116 * 179.97438 * 21 20 11 34 34 H 1.09001 * 115.54995 * 154.32933 * 22 2 1 35 35 H 1.08996 * 117.50287 * 359.97438 * 23 22 2 36 36 H 1.09000 * 117.49921 * 145.02034 * 23 22 2 37 37 H 1.09003 * 117.49796 * 252.51668 * 24 23 22 38 38 H 1.09000 * 117.49844 * 107.48567 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1729 1.1533 0.0000 4 9 3.5152 1.1583 0.1526 5 6 1.4468 2.4224 -0.1724 6 8 0.2601 2.4129 -0.4383 7 7 2.0973 3.5949 -0.0355 8 6 1.3915 4.7922 -0.0897 9 6 0.3128 4.9233 -0.9648 10 6 -0.3873 6.0921 -1.0193 11 6 -0.0117 7.1729 -0.1973 12 6 -0.7276 8.3880 -0.2526 13 1 -0.2254 9.3205 -0.0419 14 6 -2.0877 8.3843 -0.5804 15 7 -2.7403 7.2522 -0.6530 16 14 -2.9723 9.9953 -0.9145 17 1 -2.3288 10.6848 -2.0616 18 1 -4.3955 9.7208 -1.2379 19 1 -2.8958 10.8610 0.2896 20 6 1.0821 7.0351 0.6798 21 6 1.7689 5.8581 0.7277 22 6 2.2606 -1.3051 0.0006 23 6 1.4518 -2.5879 -0.2024 24 6 2.0261 -2.2557 1.1763 25 1 -0.3633 0.1038 -1.0224 26 1 -0.3633 -0.9374 0.4213 27 1 -0.3634 0.8335 0.6011 28 1 3.0576 3.6037 0.1008 29 1 0.0292 4.0955 -1.5978 30 1 -1.2248 6.1906 -1.6941 31 1 -3.6834 7.2497 -0.8799 32 1 1.3759 7.8595 1.3125 33 1 2.6080 5.7511 1.3993 34 1 3.2633 -1.2692 -0.4254 35 1 0.3746 -2.4879 -0.3359 36 1 1.9222 -3.3962 -0.7621 37 1 2.8745 -2.8455 1.5235 38 1 1.3269 -1.9371 1.9494 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899989029.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:39 Heat of formation + Delta-G solvation = -19.541638 kcal Electronic energy + Delta-G solvation = -21931.892792 eV Core-core repulsion = 18461.740616 eV Total energy + Delta-G solvation = -3470.152176 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.80626 -39.80146 -38.22707 -37.23648 -34.63916 -32.99082 -32.81500 -29.56178 -29.17313 -27.34715 -25.44775 -23.93200 -22.61846 -21.55836 -21.12353 -19.82225 -18.80442 -17.73786 -17.32617 -16.97851 -16.01318 -15.87371 -15.27824 -14.81412 -14.53891 -14.27199 -14.00583 -13.85576 -13.18888 -12.86265 -12.76500 -12.50249 -12.30934 -12.07778 -11.79322 -11.74348 -11.68935 -11.42135 -11.13235 -11.03835 -10.98318 -10.69714 -10.52308 -9.95931 -9.86312 -9.47546 -9.11175 -8.75320 -8.64752 -7.54982 -6.98409 -6.69620 -4.33297 1.12956 2.65325 3.04288 3.07686 3.10223 3.12120 3.38209 3.50380 3.69270 3.94535 4.38061 4.46088 4.58141 4.66671 4.70239 4.87975 4.97929 5.35173 5.52400 5.61948 5.66611 5.71415 5.83151 5.88833 6.01463 6.12791 6.22607 6.36174 6.52357 6.76003 6.97409 7.02266 7.15477 7.25820 7.58597 7.64242 7.90484 8.04374 8.14681 8.28484 8.59289 8.65441 8.88046 8.97173 10.23581 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.033538 B = 0.003261 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.666537 B = 8584.610514 C = 9224.720771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.052 4.052 3 C -0.010 4.010 4 F -0.141 7.141 5 C 0.529 3.471 6 O -0.506 6.506 7 N -0.640 5.640 8 C -0.008 4.008 9 C -0.087 4.087 10 C -0.150 4.150 11 C 0.107 3.893 12 C -0.460 4.460 13 H 0.077 0.923 14 C 0.071 3.929 15 N -0.797 5.797 16 Si 0.913 3.087 17 H -0.264 1.264 18 H -0.278 1.278 19 H -0.266 1.266 20 C -0.211 4.211 21 C -0.103 4.103 22 C -0.130 4.130 23 C -0.169 4.169 24 C -0.165 4.165 25 H 0.084 0.916 26 H 0.059 0.941 27 H 0.094 0.906 28 H 0.398 0.602 29 H 0.107 0.893 30 H 0.123 0.877 31 H 0.281 0.719 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.116 0.884 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.030 -14.323 0.992 15.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.055 4.055 3 C -0.032 4.032 4 F -0.120 7.120 5 C 0.315 3.685 6 O -0.384 6.384 7 N -0.282 5.282 8 C -0.100 4.100 9 C -0.106 4.106 10 C -0.170 4.170 11 C 0.104 3.896 12 C -0.490 4.490 13 H 0.095 0.905 14 C -0.146 4.146 15 N -0.423 5.423 16 Si 0.737 3.263 17 H -0.189 1.189 18 H -0.203 1.203 19 H -0.191 1.191 20 C -0.231 4.231 21 C -0.123 4.123 22 C -0.148 4.148 23 C -0.206 4.206 24 C -0.202 4.202 25 H 0.103 0.897 26 H 0.078 0.922 27 H 0.112 0.888 28 H 0.232 0.768 29 H 0.125 0.875 30 H 0.140 0.860 31 H 0.092 0.908 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.134 0.866 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.990 -14.405 0.783 15.621 hybrid contribution 0.441 0.673 0.054 0.806 sum 6.431 -13.733 0.837 15.187 Atomic orbital electron populations 1.21010 0.88767 1.02780 1.04240 1.21883 0.97294 0.91357 0.94973 1.19559 0.77172 0.94710 1.11741 1.91432 1.29943 1.97159 1.93477 1.18140 0.87153 0.83241 0.79924 1.90826 1.14175 1.86136 1.47299 1.42816 1.10549 1.04712 1.70077 1.17194 1.01360 0.85644 1.05788 1.20562 0.95218 0.97602 0.97266 1.21056 1.01271 0.93171 1.01458 1.17702 0.90124 0.93228 0.88507 1.19508 0.93912 0.94172 1.41380 0.90483 1.25922 0.98068 0.97872 0.92703 1.69813 1.10374 1.27187 1.34899 0.86302 0.78195 0.81928 0.79864 1.18909 1.20344 1.19064 1.20619 1.02099 0.96841 1.03528 1.20089 1.00097 0.94022 0.98132 1.21084 1.00176 0.88396 1.05162 1.23072 1.00536 0.97350 0.99610 1.22993 1.03665 1.01809 0.91723 0.89740 0.92178 0.88757 0.76760 0.87526 0.85956 0.90805 0.88489 0.89092 0.86562 0.87812 0.88243 0.88225 0.88260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 7.89 36.01 0.28 -1.17 16 2 C -0.05 -0.68 5.81 -101.11 -0.59 -1.27 16 3 C -0.01 -0.14 7.35 -37.70 -0.28 -0.42 16 4 F -0.14 -1.99 16.04 2.25 0.04 -1.96 16 5 C 0.53 9.75 7.43 -12.61 -0.09 9.66 16 6 O -0.51 -10.68 10.80 5.26 0.06 -10.62 16 7 N -0.64 -11.93 5.29 -10.77 -0.06 -11.99 16 8 C -0.01 -0.17 6.29 -83.61 -0.53 -0.70 16 9 C -0.09 -2.14 8.61 -39.78 -0.34 -2.49 16 10 C -0.15 -3.98 8.59 -39.26 -0.34 -4.32 16 11 C 0.11 2.86 5.54 -106.80 -0.59 2.26 16 12 C -0.46 -12.16 9.04 -37.86 -0.34 -12.50 16 13 H 0.08 1.93 7.86 -52.49 -0.41 1.52 16 14 C 0.07 1.80 5.27 -17.34 -0.09 1.71 16 15 N -0.80 -20.97 10.84 55.55 0.60 -20.37 16 16 Si 0.91 18.77 29.57 -169.99 -5.03 13.75 16 17 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 18 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 19 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 20 C -0.21 -5.11 9.74 -39.26 -0.38 -5.49 16 21 C -0.10 -2.29 9.90 -39.78 -0.39 -2.68 16 22 C -0.13 -1.35 5.70 -91.77 -0.52 -1.87 16 23 C -0.17 -1.38 9.76 -26.73 -0.26 -1.64 16 24 C -0.16 -1.39 10.11 -26.73 -0.27 -1.66 16 25 H 0.08 1.14 8.01 -51.93 -0.42 0.72 16 26 H 0.06 0.62 6.29 -51.93 -0.33 0.29 16 27 H 0.09 1.47 6.23 -51.93 -0.32 1.15 16 28 H 0.40 6.21 8.38 -40.82 -0.34 5.86 16 29 H 0.11 2.62 6.28 -52.49 -0.33 2.29 16 30 H 0.12 3.38 6.25 -52.48 -0.33 3.05 16 31 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 32 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 33 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 34 H 0.12 1.18 7.88 -51.93 -0.41 0.77 16 35 H 0.10 0.83 6.41 -51.93 -0.33 0.49 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 323.32 15.07 4.87 4.87 Total: -1.00 -28.75 323.32 -8.72 -37.47 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -4.47 Total: 11.43 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -4.74 Total: -22.58 kcal Atomic # 7 Polarization: -32.91 SS G_CDS: 0.55 Total: -32.36 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.06 Total: -10.62 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.75 -8.72 -37.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899989029.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.924 kcal (2) G-P(sol) polarization free energy of solvation -28.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds