Wall clock time and date at job start Tue Mar 31 2020 05:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33169 * 119.99837 * 2 1 4 4 F 1.35103 * 119.99772 * 172.50399 * 3 2 1 5 5 C 1.47224 * 119.99870 * 352.22875 * 3 2 1 6 6 O 1.21620 * 120.00461 * 353.17712 * 5 3 2 7 7 N 1.34784 * 120.00097 * 173.17543 * 5 3 2 8 8 C 1.39090 * 120.00067 * 185.25959 * 7 5 3 9 9 C 1.39518 * 119.83990 * 323.50613 * 8 7 5 10 10 C 1.36357 * 120.16619 * 179.72164 * 9 8 7 11 11 C 1.40881 * 119.83183 * 0.54779 * 10 9 8 12 12 C 1.41132 * 120.16007 * 179.70128 * 11 10 9 13 13 H 1.07995 * 119.99599 * 209.90798 * 12 11 10 14 14 C 1.39908 * 120.00012 * 29.90764 * 12 11 10 15 15 N 1.30872 * 120.00026 * 9.51839 * 14 12 11 16 16 Si 1.86801 * 119.99906 * 189.51639 * 14 12 11 17 17 H 1.48500 * 109.47231 * 60.00259 * 16 14 12 18 18 H 1.48504 * 109.47120 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47377 * 300.00207 * 16 14 12 20 20 C 1.40884 * 119.67825 * 359.72414 * 11 10 9 21 21 C 1.36359 * 119.82804 * 359.97438 * 20 11 10 22 22 C 1.50700 * 120.00235 * 179.97438 * 2 1 3 23 23 C 1.53002 * 117.49593 * 8.62431 * 22 2 1 24 24 C 1.53002 * 60.00087 * 252.50887 * 23 22 2 25 25 H 1.09002 * 109.46992 * 84.20523 * 1 2 3 26 26 H 1.09001 * 109.47003 * 204.20026 * 1 2 3 27 27 H 1.08997 * 109.47321 * 324.19973 * 1 2 3 28 28 H 0.97000 * 119.99518 * 5.25622 * 7 5 3 29 29 H 1.07997 * 119.91487 * 359.97140 * 9 8 7 30 30 H 1.08005 * 120.08278 * 180.27185 * 10 9 8 31 31 H 0.97006 * 119.99656 * 179.97438 * 15 14 12 32 32 H 1.07999 * 120.08305 * 179.97438 * 20 11 10 33 33 H 1.08005 * 119.91116 * 179.97438 * 21 20 11 34 34 H 1.09001 * 115.54995 * 154.32933 * 22 2 1 35 35 H 1.08996 * 117.50287 * 359.97438 * 23 22 2 36 36 H 1.09000 * 117.49921 * 145.02034 * 23 22 2 37 37 H 1.09003 * 117.49796 * 252.51668 * 24 23 22 38 38 H 1.09000 * 117.49844 * 107.48567 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1729 1.1533 0.0000 4 9 3.5152 1.1583 0.1526 5 6 1.4468 2.4224 -0.1724 6 8 0.2601 2.4129 -0.4383 7 7 2.0973 3.5949 -0.0355 8 6 1.3915 4.7922 -0.0897 9 6 0.3128 4.9233 -0.9648 10 6 -0.3873 6.0921 -1.0193 11 6 -0.0117 7.1729 -0.1973 12 6 -0.7276 8.3880 -0.2526 13 1 -0.2254 9.3205 -0.0419 14 6 -2.0877 8.3843 -0.5804 15 7 -2.7403 7.2522 -0.6530 16 14 -2.9723 9.9953 -0.9145 17 1 -2.3288 10.6848 -2.0616 18 1 -4.3955 9.7208 -1.2379 19 1 -2.8958 10.8610 0.2896 20 6 1.0821 7.0351 0.6798 21 6 1.7689 5.8581 0.7277 22 6 2.2606 -1.3051 0.0006 23 6 1.4518 -2.5879 -0.2024 24 6 2.0261 -2.2557 1.1763 25 1 -0.3633 0.1038 -1.0224 26 1 -0.3633 -0.9374 0.4213 27 1 -0.3634 0.8335 0.6011 28 1 3.0576 3.6037 0.1008 29 1 0.0292 4.0955 -1.5978 30 1 -1.2248 6.1906 -1.6941 31 1 -3.6834 7.2497 -0.8799 32 1 1.3759 7.8595 1.3125 33 1 2.6080 5.7511 1.3993 34 1 3.2633 -1.2692 -0.4254 35 1 0.3746 -2.4879 -0.3359 36 1 1.9222 -3.3962 -0.7621 37 1 2.8745 -2.8455 1.5235 38 1 1.3269 -1.9371 1.9494 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899989029.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:38 Heat of formation + Delta-G solvation = -34.206033 kcal Electronic energy + Delta-G solvation = -21932.528688 eV Core-core repulsion = 18461.740616 eV Total energy + Delta-G solvation = -3470.788072 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.91166 -41.34936 -39.43441 -38.69587 -36.33834 -34.76942 -33.94656 -31.47857 -30.99992 -28.61593 -27.02952 -25.27649 -23.33492 -23.21652 -22.80719 -21.37079 -19.99075 -19.24816 -19.04897 -18.20147 -17.39224 -17.16067 -17.00369 -16.19034 -15.82546 -15.63858 -15.34768 -15.08326 -14.80996 -14.53493 -14.08583 -14.01833 -13.68364 -13.59802 -13.51436 -13.15941 -12.80157 -12.71346 -12.67113 -12.34379 -12.29214 -11.85023 -11.77213 -11.67077 -11.41343 -11.22560 -10.80569 -10.43278 -9.78904 -9.48241 -8.84940 -8.57654 -6.31433 -0.05676 0.85997 1.11797 1.39060 1.49314 1.51742 1.95005 2.07516 2.22414 2.77719 2.93436 3.17033 3.48180 3.69690 3.77401 3.79171 4.02009 4.11691 4.39526 4.45359 4.58048 4.67873 4.79080 4.82011 4.92578 4.96783 5.01084 5.10064 5.12627 5.21573 5.24520 5.31205 5.37371 5.45415 5.67142 5.84012 6.02863 6.09034 6.31124 6.56380 6.66710 6.92207 6.96210 7.18510 8.37610 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.033538 B = 0.003261 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.666537 B = 8584.610514 C = 9224.720771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.022 4.022 3 C -0.034 4.034 4 F -0.135 7.135 5 C 0.527 3.473 6 O -0.539 6.539 7 N -0.638 5.638 8 C 0.005 3.995 9 C -0.098 4.098 10 C -0.172 4.172 11 C 0.075 3.925 12 C -0.494 4.494 13 H 0.082 0.918 14 C 0.027 3.973 15 N -0.835 5.835 16 Si 0.988 3.012 17 H -0.259 1.259 18 H -0.271 1.271 19 H -0.258 1.258 20 C -0.218 4.218 21 C -0.100 4.100 22 C -0.156 4.156 23 C -0.155 4.155 24 C -0.154 4.154 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.066 0.934 28 H 0.415 0.585 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.286 0.714 32 H 0.112 0.888 33 H 0.131 0.869 34 H 0.121 0.879 35 H 0.106 0.894 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.168 -15.940 1.801 18.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.025 4.025 3 C -0.056 4.056 4 F -0.114 7.114 5 C 0.316 3.684 6 O -0.419 6.419 7 N -0.281 5.281 8 C -0.088 4.088 9 C -0.118 4.118 10 C -0.192 4.192 11 C 0.072 3.928 12 C -0.524 4.524 13 H 0.100 0.900 14 C -0.186 4.186 15 N -0.462 5.462 16 Si 0.809 3.191 17 H -0.183 1.183 18 H -0.196 1.196 19 H -0.182 1.182 20 C -0.238 4.238 21 C -0.119 4.119 22 C -0.174 4.174 23 C -0.192 4.192 24 C -0.191 4.191 25 H 0.098 0.902 26 H 0.110 0.890 27 H 0.085 0.915 28 H 0.252 0.748 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.096 0.904 32 H 0.130 0.870 33 H 0.149 0.851 34 H 0.139 0.861 35 H 0.125 0.875 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.175 -16.047 1.602 17.651 hybrid contribution 0.157 0.924 -0.168 0.952 sum 7.332 -15.123 1.433 16.868 Atomic orbital electron populations 1.20990 0.88933 1.03322 1.03587 1.22239 0.97336 0.92250 0.90660 1.19017 0.77597 0.93385 1.15646 1.91441 1.29112 1.97013 1.93850 1.18677 0.87005 0.84138 0.78548 1.90819 1.15767 1.86807 1.48540 1.42735 1.11300 1.03684 1.70429 1.17265 1.00287 0.87115 1.04157 1.20594 0.96310 0.96819 0.98112 1.20949 1.01622 0.94399 1.02216 1.18041 0.91562 0.93633 0.89518 1.19799 0.94969 0.94353 1.43271 0.90014 1.26845 0.98458 1.01562 0.91757 1.69908 1.10885 1.29525 1.35882 0.85163 0.76946 0.77118 0.79910 1.18321 1.19577 1.18173 1.20883 1.01551 0.98206 1.03158 1.20425 1.00655 0.92861 0.98007 1.21175 1.00636 0.87645 1.07916 1.23218 1.00573 0.95950 0.99443 1.23126 1.04214 1.00275 0.91469 0.90241 0.88965 0.91518 0.74765 0.88180 0.88150 0.90373 0.86959 0.85092 0.86099 0.87524 0.86236 0.86328 0.88317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.82 7.89 71.24 0.56 -2.26 16 2 C -0.02 -0.54 5.81 -17.59 -0.10 -0.64 16 3 C -0.03 -1.00 7.35 23.49 0.17 -0.83 16 4 F -0.14 -3.60 16.04 44.97 0.72 -2.88 16 5 C 0.53 19.49 7.43 86.60 0.64 20.13 16 6 O -0.54 -23.38 10.80 -4.09 -0.04 -23.42 16 7 N -0.64 -23.44 5.29 -306.24 -1.62 -25.06 16 8 C 0.00 0.22 6.29 38.61 0.24 0.46 16 9 C -0.10 -5.06 8.61 22.14 0.19 -4.87 16 10 C -0.17 -9.62 8.59 22.48 0.19 -9.43 16 11 C 0.07 4.14 5.54 -21.27 -0.12 4.02 16 12 C -0.49 -26.94 9.04 23.39 0.21 -26.72 16 13 H 0.08 4.20 7.86 -2.91 -0.02 4.17 16 14 C 0.03 1.41 5.27 85.24 0.45 1.85 16 15 N -0.84 -45.80 10.84 21.82 0.24 -45.57 16 16 Si 0.99 39.06 29.57 68.60 2.03 41.09 16 17 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 18 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 19 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 20 C -0.22 -10.59 9.74 22.48 0.22 -10.37 16 21 C -0.10 -4.31 9.90 22.14 0.22 -4.09 16 22 C -0.16 -2.78 5.70 -11.54 -0.07 -2.85 16 23 C -0.16 -1.95 9.76 30.60 0.30 -1.65 16 24 C -0.15 -2.04 10.11 30.60 0.31 -1.73 16 25 H 0.08 2.12 8.01 -2.39 -0.02 2.10 16 26 H 0.09 1.69 6.29 -2.39 -0.02 1.67 16 27 H 0.07 2.11 6.23 -2.39 -0.01 2.09 16 28 H 0.42 12.33 8.38 -92.71 -0.78 11.55 16 29 H 0.10 5.18 6.28 -2.91 -0.02 5.16 16 30 H 0.10 5.95 6.25 -2.91 -0.02 5.93 16 31 H 0.29 14.31 8.30 -92.70 -0.77 13.54 16 32 H 0.11 4.99 8.06 -2.91 -0.02 4.97 16 33 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 34 H 0.12 2.10 7.88 -2.39 -0.02 2.08 16 35 H 0.11 1.30 6.41 -2.39 -0.02 1.29 16 36 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -65.04 323.32 5.07 -59.96 By element: Atomic # 1 Polarization: 34.51 SS G_CDS: 0.33 Total: 34.84 kcal Atomic # 6 Polarization: -42.39 SS G_CDS: 3.43 Total: -38.96 kcal Atomic # 7 Polarization: -69.24 SS G_CDS: -1.38 Total: -70.62 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.04 Total: -23.42 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.72 Total: -2.88 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 2.03 Total: 41.09 kcal Total: -65.04 5.07 -59.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899989029.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.756 kcal (2) G-P(sol) polarization free energy of solvation -65.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds