Wall clock time and date at job start Tue Mar 31 2020 05:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46974 * 2 1 4 4 N 1.46491 * 109.47420 * 120.00033 * 2 1 3 5 5 C 1.46503 * 120.00358 * 294.11383 * 4 2 1 6 6 C 1.50706 * 109.46619 * 269.99592 * 5 4 2 7 7 H 1.07997 * 120.00008 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99510 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00158 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99804 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47058 * 59.99756 * 10 8 6 12 12 H 1.48498 * 109.47168 * 180.02562 * 10 8 6 13 13 H 1.48508 * 109.47125 * 300.00298 * 10 8 6 14 14 C 1.34777 * 119.99962 * 114.10754 * 4 2 1 15 15 O 1.21625 * 120.00109 * 184.18751 * 14 4 2 16 16 C 1.47318 * 120.00217 * 4.18509 * 14 4 2 17 17 C 1.39003 * 120.90196 * 305.02948 * 16 14 4 18 18 C 1.39719 * 119.29453 * 180.22677 * 17 16 14 19 19 C 1.35267 * 121.07239 * 359.51602 * 18 17 16 20 20 N 1.35713 * 121.57606 * 0.46212 * 19 18 17 21 21 N 1.40201 * 134.09137 * 179.75853 * 20 19 18 22 22 N 1.29018 * 106.96342 * 180.02562 * 21 20 19 23 23 N 1.28594 * 110.78475 * 359.97438 * 22 21 20 24 24 C 1.32042 * 110.21524 * 0.02562 * 23 22 21 25 25 H 1.08996 * 109.47034 * 300.00038 * 1 2 3 26 26 H 1.09000 * 109.46753 * 59.99983 * 1 2 3 27 27 H 1.08999 * 109.46471 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47342 * 240.00589 * 2 1 3 29 29 H 1.09000 * 109.46784 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47157 * 300.00539 * 3 2 1 31 31 H 1.09002 * 109.46605 * 60.00138 * 3 2 1 32 32 H 1.09001 * 109.47042 * 29.98942 * 5 4 2 33 33 H 1.08998 * 109.47430 * 149.99588 * 5 4 2 34 34 H 0.96995 * 119.99668 * 179.97438 * 9 8 6 35 35 H 1.08002 * 120.35849 * 359.95357 * 17 16 14 36 36 H 1.07998 * 119.46374 * 179.72505 * 18 17 16 37 37 H 1.07996 * 119.20871 * 180.26370 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7740 -0.1195 2.5229 6 6 2.9129 0.7952 2.8936 7 1 3.7366 0.9365 2.2095 8 6 2.9033 1.4515 4.1061 9 7 1.9000 1.2797 4.9389 10 14 4.3147 2.5857 4.5654 11 1 4.4159 3.6795 3.5661 12 1 4.0670 3.1646 5.9103 13 1 5.5835 1.8143 4.5850 14 6 2.6925 -1.8514 1.0759 15 8 3.0316 -2.4636 2.0707 16 6 3.0187 -2.3789 -0.2603 17 6 2.0238 -2.5846 -1.2090 18 6 2.3704 -3.0909 -2.4644 19 6 3.6568 -3.3737 -2.7722 20 7 4.6593 -3.1875 -1.8766 21 7 6.0463 -3.3896 -1.9089 22 7 6.5051 -3.0363 -0.7560 23 7 5.5544 -2.6292 0.0083 24 6 4.3980 -2.6993 -0.6252 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 0.8429 0.4471 2.5086 33 1 1.6995 -0.9225 3.2561 34 1 1.8935 1.7412 5.7920 35 1 0.9933 -2.3597 -0.9769 36 1 1.5990 -3.2559 -3.2020 37 1 3.8913 -3.7598 -3.7532 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900469109.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:26 Heat of formation + Delta-G solvation = 123.852685 kcal Electronic energy + Delta-G solvation = -23326.040655 eV Core-core repulsion = 19914.319236 eV Total energy + Delta-G solvation = -3411.721419 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.37258 -39.78364 -38.28839 -36.14036 -34.05158 -32.80900 -32.11581 -31.06024 -30.67932 -27.54929 -26.83646 -25.32049 -24.42284 -23.64006 -22.50440 -21.45039 -19.36057 -18.40332 -17.67525 -17.04476 -16.73808 -16.47218 -16.06423 -15.37298 -14.50666 -14.25261 -13.98426 -13.75855 -13.44454 -13.19780 -13.13199 -12.70259 -12.53241 -12.32706 -12.23187 -11.78569 -11.72588 -11.56178 -11.17871 -11.01814 -10.97173 -10.91504 -10.63783 -10.50984 -10.25322 -10.04239 -9.61090 -9.29091 -8.65767 -8.41644 -7.81233 -6.04436 -4.07722 -0.01348 0.37211 1.53824 2.09756 2.66491 3.10929 3.34640 3.39156 3.45104 3.49678 3.61973 3.93741 4.20889 4.40827 4.46591 4.65860 4.89366 5.08196 5.16258 5.27291 5.31720 5.35794 5.39533 5.51227 5.54812 5.72816 5.86303 6.00004 6.14163 6.16889 6.27723 6.48815 6.89732 6.97173 7.36360 7.44236 7.91938 8.19838 8.22322 8.35591 8.74783 8.97308 9.56735 11.03805 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.017535 B = 0.005767 C = 0.004877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.413552 B = 4853.982786 C = 5740.376955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.122 3.878 3 C -0.155 4.155 4 N -0.577 5.577 5 C 0.248 3.752 6 C -0.523 4.523 7 H 0.059 0.941 8 C 0.064 3.936 9 N -0.895 5.895 10 Si 0.894 3.106 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.275 1.275 14 C 0.554 3.446 15 O -0.508 6.508 16 C -0.069 4.069 17 C -0.043 4.043 18 C -0.135 4.135 19 C 0.108 3.892 20 N -0.305 5.305 21 N -0.115 5.115 22 N -0.009 5.009 23 N -0.295 5.295 24 C 0.268 3.732 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.083 0.917 32 H 0.039 0.961 33 H 0.046 0.954 34 H 0.264 0.736 35 H 0.165 0.835 36 H 0.172 0.828 37 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.764 -5.816 -19.222 20.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.018 3.982 3 C -0.213 4.213 4 N -0.309 5.309 5 C 0.130 3.870 6 C -0.562 4.562 7 H 0.077 0.923 8 C -0.139 4.139 9 N -0.534 5.534 10 Si 0.722 3.278 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.338 3.662 15 O -0.384 6.384 16 C -0.078 4.078 17 C -0.069 4.069 18 C -0.158 4.158 19 C -0.019 4.019 20 N -0.085 5.085 21 N -0.098 5.098 22 N -0.002 5.002 23 N -0.152 5.152 24 C 0.010 3.990 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.182 0.818 36 H 0.190 0.810 37 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -3.976 -6.229 -18.294 19.730 hybrid contribution -0.041 0.687 -0.099 0.695 sum -4.017 -5.543 -18.392 19.625 Atomic orbital electron populations 1.22212 0.95203 1.01757 1.02975 1.21251 0.94180 0.94808 0.88012 1.22104 1.01745 0.95061 1.02400 1.48300 1.52863 1.20179 1.09569 1.19350 0.96898 0.94207 0.76593 1.21377 1.06241 1.25983 1.02560 0.92281 1.24884 0.96035 0.96962 0.95972 1.69910 1.30832 1.43152 1.09504 0.86612 0.82975 0.80741 0.77490 1.20279 1.21219 1.20017 1.17385 0.80169 0.82395 0.86285 1.90862 1.52106 1.58117 1.37268 1.20728 0.86868 1.02532 0.97693 1.22001 1.00336 0.93406 0.91165 1.20986 0.94894 1.01517 0.98417 1.21654 0.85465 0.99560 0.95192 1.48946 1.08441 1.39541 1.11612 1.82742 0.82475 1.27178 1.17429 1.78020 1.21795 1.04778 0.95618 1.75264 0.93980 1.22492 1.23454 1.23681 0.96101 0.96271 0.82935 0.91010 0.91869 0.92864 0.90751 0.92504 0.93148 0.89852 0.94316 0.93567 0.92675 0.81783 0.81028 0.80194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.04 37.16 0.34 -1.59 16 2 C 0.12 1.78 2.52 -67.93 -0.17 1.61 16 3 C -0.16 -2.45 8.34 37.16 0.31 -2.14 16 4 N -0.58 -11.45 2.38 -168.76 -0.40 -11.85 16 5 C 0.25 6.10 4.47 -5.19 -0.02 6.08 16 6 C -0.52 -14.32 7.85 -34.44 -0.27 -14.59 16 7 H 0.06 1.65 7.52 -52.49 -0.39 1.26 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 9 N -0.90 -25.96 13.29 55.43 0.74 -25.23 16 10 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.27 -6.93 7.11 56.52 0.40 -6.52 16 14 C 0.55 11.43 7.23 -12.57 -0.09 11.34 16 15 O -0.51 -12.99 16.66 5.26 0.09 -12.91 16 16 C -0.07 -1.08 5.01 -102.72 -0.51 -1.60 16 17 C -0.04 -0.41 7.53 -38.74 -0.29 -0.71 16 18 C -0.13 -0.80 9.92 -40.09 -0.40 -1.20 16 19 C 0.11 0.86 11.15 -16.89 -0.19 0.67 16 20 N -0.31 -4.21 3.94 -10.99 -0.04 -4.25 16 21 N -0.12 -1.86 13.99 60.35 0.84 -1.01 16 22 N -0.01 -0.17 13.36 60.35 0.81 0.63 16 23 N -0.29 -6.11 12.24 32.20 0.39 -5.72 16 24 C 0.27 4.66 8.04 -154.52 -1.24 3.42 16 25 H 0.07 1.01 6.91 -51.93 -0.36 0.65 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.54 7.30 -51.93 -0.38 0.16 16 28 H 0.07 0.89 4.63 -51.93 -0.24 0.65 16 29 H 0.06 1.00 7.95 -51.93 -0.41 0.58 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.08 1.54 6.94 -51.93 -0.36 1.18 16 32 H 0.04 0.94 6.72 -51.93 -0.35 0.60 16 33 H 0.05 1.30 7.37 -51.93 -0.38 0.92 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.16 1.19 6.41 -52.49 -0.34 0.85 16 36 H 0.17 0.20 8.06 -52.49 -0.42 -0.22 16 37 H 0.18 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 315.73 15.07 4.76 4.76 Total: -1.00 -36.18 315.73 -4.52 -40.70 By element: Atomic # 1 Polarization: -1.01 SS G_CDS: -4.04 Total: -5.05 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -2.64 Total: 2.98 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 2.34 Total: -47.43 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.09 Total: -12.91 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -36.18 -4.52 -40.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900469109.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.551 kcal (2) G-P(sol) polarization free energy of solvation -36.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds