Wall clock time and date at job start Tue Mar 31 2020 05:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32872 * 1 3 3 C 1.47119 * 120.00422 * 2 1 4 4 C 1.32867 * 120.00109 * 175.26229 * 3 2 1 5 5 C 1.50703 * 120.00104 * 6.15570 * 4 3 2 6 6 C 1.52993 * 109.47289 * 126.02998 * 5 4 3 7 7 N 1.46497 * 109.47429 * 180.02562 * 6 5 4 8 8 C 1.40006 * 120.00294 * 179.97438 * 7 6 5 9 9 C 1.38647 * 120.09602 * 359.97438 * 8 7 6 10 10 C 1.38290 * 120.00227 * 179.97438 * 9 8 7 11 11 C 1.38267 * 120.20145 * 359.97438 * 10 9 8 12 12 C 1.38250 * 120.20047 * 0.02562 * 11 10 9 13 13 C 1.38731 * 119.99262 * 359.71164 * 12 11 10 14 14 S 1.76200 * 120.10238 * 180.28451 * 13 12 11 15 15 C 1.81400 * 102.99887 * 0.27451 * 14 13 12 16 16 C 1.50700 * 109.47213 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99436 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00067 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99706 * 180.02562 * 18 16 15 20 20 Si 1.86791 * 120.00026 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47369 * 89.99690 * 20 18 16 22 22 H 1.48501 * 109.47084 * 209.99399 * 20 18 16 23 23 H 1.48498 * 109.47187 * 329.99321 * 20 18 16 24 24 H 1.07997 * 120.00135 * 180.02562 * 1 2 3 25 25 H 1.08001 * 119.99715 * 359.72326 * 1 2 3 26 26 H 1.08002 * 119.99620 * 179.97438 * 2 1 3 27 27 H 1.08003 * 119.99470 * 355.26232 * 3 2 1 28 28 H 1.08002 * 119.99630 * 186.15698 * 4 3 2 29 29 H 1.09000 * 109.46812 * 246.02932 * 5 4 3 30 30 H 1.08992 * 109.47068 * 6.02387 * 5 4 3 31 31 H 1.09004 * 109.46715 * 299.99967 * 6 5 4 32 32 H 1.09002 * 109.47611 * 59.99535 * 6 5 4 33 33 H 0.97000 * 119.99666 * 359.97438 * 7 6 5 34 34 H 1.07998 * 119.99786 * 359.97234 * 9 8 7 35 35 H 1.07994 * 119.89964 * 179.97438 * 10 9 8 36 36 H 1.08005 * 119.90047 * 179.97438 * 11 10 9 37 37 H 1.08007 * 120.00034 * 179.97438 * 12 11 10 38 38 H 1.09001 * 109.47548 * 300.00284 * 15 14 13 39 39 H 1.09005 * 109.46899 * 60.00140 * 15 14 13 40 40 H 0.97000 * 119.99846 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0644 1.2740 0.0000 4 6 3.3897 1.2759 0.0950 5 6 4.1493 -0.0253 0.0631 6 6 5.2198 0.0358 -1.0283 7 7 5.9578 -1.2293 -1.0598 8 6 6.9940 -1.4125 -1.9833 9 6 7.3230 -0.3981 -2.8694 10 6 8.3472 -0.5809 -3.7804 11 6 9.0463 -1.7735 -3.8110 12 6 8.7252 -2.7905 -2.9314 13 6 7.7029 -2.6139 -2.0103 14 16 7.2963 -3.9054 -0.8829 15 6 8.4768 -5.2126 -1.3168 16 6 8.2542 -6.4068 -0.4250 17 1 7.4797 -6.3820 0.3272 18 6 9.0386 -7.5314 -0.5703 19 7 8.8439 -8.5738 0.2077 20 14 10.3776 -7.5745 -1.8719 21 1 11.6474 -7.0670 -1.2928 22 1 10.5698 -8.9711 -2.3384 23 1 9.9803 -6.7196 -3.0193 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0045 26 1 1.8687 -0.9354 0.0004 27 1 1.5271 2.2078 -0.0773 28 1 3.9225 2.2100 0.1952 29 1 4.6248 -0.1921 1.0295 30 1 3.4605 -0.8429 -0.1489 31 1 4.7442 0.2027 -1.9948 32 1 5.9086 0.8536 -0.8163 33 1 5.7286 -1.9400 -0.4408 34 1 6.7794 0.5349 -2.8481 35 1 8.6018 0.2102 -4.4701 36 1 9.8450 -1.9112 -4.5249 37 1 9.2731 -3.7209 -2.9583 38 1 8.3309 -5.5033 -2.3572 39 1 9.4935 -4.8433 -1.1819 40 1 9.3960 -9.3648 0.1058 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000901984208.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:35 Heat of formation + Delta-G solvation = 52.579726 kcal Electronic energy + Delta-G solvation = -19105.796235 eV Core-core repulsion = 16204.984652 eV Total energy + Delta-G solvation = -2900.811583 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.10536 -37.19101 -35.28672 -33.14218 -32.40040 -30.83734 -29.81602 -29.26183 -27.32305 -23.86522 -22.84057 -22.23228 -21.88669 -20.94705 -18.72570 -17.57796 -16.77401 -16.32433 -16.22788 -15.81098 -15.01315 -14.66212 -14.45843 -14.18714 -13.67109 -13.59352 -13.26201 -13.23643 -12.68248 -12.65473 -12.51800 -12.37379 -12.13201 -11.71828 -11.55499 -11.04528 -10.99936 -10.87971 -10.79292 -10.39437 -10.20118 -9.90318 -9.71803 -9.19897 -9.15431 -8.75212 -8.60629 -7.57277 -6.43035 -6.24309 -4.27676 1.08306 1.63410 1.88277 2.40777 2.80593 3.18443 3.25776 3.27051 3.43782 3.67843 4.11384 4.26245 4.48437 4.76957 4.79765 4.90630 5.05330 5.07216 5.14047 5.29709 5.34465 5.37110 5.48164 5.56464 5.71270 5.75955 5.78028 5.98530 6.10126 6.18366 6.25360 6.39403 6.43230 6.50107 6.59778 6.62414 6.63982 6.87251 7.07961 7.34347 7.52150 7.88688 8.21964 8.76034 9.30956 10.87495 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.015883 B = 0.003548 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.452059 B = 7890.478592 C = 9392.555494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.135 4.135 3 C -0.137 4.137 4 C -0.134 4.134 5 C -0.115 4.115 6 C 0.135 3.865 7 N -0.746 5.746 8 C 0.226 3.774 9 C -0.187 4.187 10 C -0.092 4.092 11 C -0.160 4.160 12 C -0.092 4.092 13 C -0.145 4.145 14 S -0.141 6.141 15 C 0.035 3.965 16 C -0.519 4.519 17 H 0.084 0.916 18 C 0.082 3.918 19 N -0.889 5.889 20 Si 0.876 3.124 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.264 1.264 24 H 0.101 0.899 25 H 0.096 0.904 26 H 0.120 0.880 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.404 0.596 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.124 0.876 38 H 0.041 0.959 39 H 0.037 0.963 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.999 20.194 -4.201 22.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.153 4.153 3 C -0.155 4.155 4 C -0.153 4.153 5 C -0.152 4.152 6 C 0.010 3.990 7 N -0.378 5.378 8 C 0.118 3.882 9 C -0.212 4.212 10 C -0.114 4.114 11 C -0.182 4.182 12 C -0.118 4.118 13 C -0.261 4.261 14 S 0.104 5.896 15 C -0.113 4.113 16 C -0.558 4.558 17 H 0.102 0.898 18 C -0.123 4.123 19 N -0.526 5.526 20 Si 0.702 3.298 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.189 1.189 24 H 0.119 0.881 25 H 0.115 0.885 26 H 0.137 0.863 27 H 0.133 0.867 28 H 0.134 0.866 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.241 0.759 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.141 0.859 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.888 20.034 -3.235 22.575 hybrid contribution 1.651 -0.355 -1.387 2.186 sum -8.237 19.679 -4.622 21.829 Atomic orbital electron populations 1.24379 0.95680 1.01925 0.99821 1.22184 0.95493 0.97261 1.00324 1.21903 0.94755 0.96819 1.02003 1.23223 0.94885 0.98257 0.98920 1.21013 0.97744 0.96769 0.99651 1.21153 0.92822 0.86670 0.98325 1.44733 1.36483 1.17255 1.39344 1.17270 0.88433 0.92163 0.90294 1.20449 1.02404 0.98581 0.99737 1.20768 0.95534 0.97061 0.97988 1.20780 1.02019 0.94178 1.01194 1.21077 0.96354 0.99465 0.94861 1.21581 1.02249 0.98179 1.04122 1.84994 1.50286 1.10091 1.44242 1.21665 0.94556 0.94570 1.00498 1.20421 1.20502 0.96026 1.18832 0.89776 1.24829 0.96832 0.94877 0.95728 1.69856 1.39751 1.04701 1.38271 0.86828 0.82532 0.77963 0.82431 1.19730 1.20675 1.18895 0.88075 0.88536 0.86268 0.86742 0.86566 0.90045 0.89951 0.92407 0.92422 0.75893 0.86399 0.86630 0.86674 0.85855 0.94039 0.94503 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 14.43 28.88 0.42 -0.97 16 2 C -0.13 -1.17 9.30 -37.83 -0.35 -1.52 16 3 C -0.14 -1.10 9.83 -37.83 -0.37 -1.47 16 4 C -0.13 -1.06 9.59 -36.16 -0.35 -1.41 16 5 C -0.11 -1.04 5.57 -27.89 -0.16 -1.19 16 6 C 0.13 1.41 4.90 -4.05 -0.02 1.39 16 7 N -0.75 -10.44 5.68 -58.45 -0.33 -10.78 16 8 C 0.23 3.66 6.66 -83.49 -0.56 3.11 16 9 C -0.19 -2.63 9.31 -39.41 -0.37 -3.00 16 10 C -0.09 -1.25 10.04 -39.55 -0.40 -1.64 16 11 C -0.16 -2.42 10.04 -39.57 -0.40 -2.81 16 12 C -0.09 -1.66 9.36 -39.39 -0.37 -2.03 16 13 C -0.14 -2.70 6.12 -38.92 -0.24 -2.94 16 14 S -0.14 -2.97 20.37 -107.50 -2.19 -5.16 16 15 C 0.03 0.84 3.16 36.01 0.11 0.95 16 16 C -0.52 -14.61 9.68 -34.44 -0.33 -14.94 16 17 H 0.08 2.57 7.96 -52.49 -0.42 2.16 16 18 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 19 N -0.89 -26.56 13.96 55.43 0.77 -25.79 16 20 Si 0.88 20.80 27.47 -169.99 -4.67 16.14 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.26 -5.99 6.54 56.52 0.37 -5.62 16 24 H 0.10 0.69 8.06 -52.49 -0.42 0.27 16 25 H 0.10 0.63 8.05 -52.49 -0.42 0.20 16 26 H 0.12 1.05 5.83 -52.49 -0.31 0.74 16 27 H 0.11 0.77 8.06 -52.48 -0.42 0.34 16 28 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.77 5.33 -51.93 -0.28 0.50 16 31 H 0.06 0.60 7.95 -51.93 -0.41 0.18 16 32 H 0.06 0.57 7.96 -51.93 -0.41 0.15 16 33 H 0.40 5.95 7.02 -40.82 -0.29 5.66 16 34 H 0.12 1.37 6.74 -52.49 -0.35 1.02 16 35 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 37 H 0.12 2.30 5.88 -52.48 -0.31 1.99 16 38 H 0.04 0.99 6.79 -51.92 -0.35 0.64 16 39 H 0.04 0.87 7.19 -51.92 -0.37 0.50 16 40 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 345.14 15.07 5.20 5.20 Total: -1.00 -30.08 345.14 -10.31 -40.39 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -5.63 Total: 6.24 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: -3.47 Total: -26.24 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.44 Total: -36.57 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.14 kcal Atomic # 16 Polarization: -2.97 SS G_CDS: -2.19 Total: -5.16 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.08 -10.31 -40.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901984208.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.972 kcal (2) G-P(sol) polarization free energy of solvation -30.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds