Wall clock time and date at job start Tue Mar 31 2020 05:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32872 * 1 3 3 C 1.47119 * 120.00422 * 2 1 4 4 C 1.32867 * 120.00109 * 175.26229 * 3 2 1 5 5 C 1.50703 * 120.00104 * 6.15570 * 4 3 2 6 6 C 1.52993 * 109.47289 * 126.02998 * 5 4 3 7 7 N 1.46497 * 109.47429 * 180.02562 * 6 5 4 8 8 C 1.40006 * 120.00294 * 179.97438 * 7 6 5 9 9 C 1.38647 * 120.09602 * 359.97438 * 8 7 6 10 10 C 1.38290 * 120.00227 * 179.97438 * 9 8 7 11 11 C 1.38267 * 120.20145 * 359.97438 * 10 9 8 12 12 C 1.38250 * 120.20047 * 0.02562 * 11 10 9 13 13 C 1.38731 * 119.99262 * 359.71164 * 12 11 10 14 14 S 1.76200 * 120.10238 * 180.28451 * 13 12 11 15 15 C 1.81400 * 102.99887 * 0.27451 * 14 13 12 16 16 C 1.50700 * 109.47213 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99436 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00067 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99706 * 180.02562 * 18 16 15 20 20 Si 1.86791 * 120.00026 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47369 * 89.99690 * 20 18 16 22 22 H 1.48501 * 109.47084 * 209.99399 * 20 18 16 23 23 H 1.48498 * 109.47187 * 329.99321 * 20 18 16 24 24 H 1.07997 * 120.00135 * 180.02562 * 1 2 3 25 25 H 1.08001 * 119.99715 * 359.72326 * 1 2 3 26 26 H 1.08002 * 119.99620 * 179.97438 * 2 1 3 27 27 H 1.08003 * 119.99470 * 355.26232 * 3 2 1 28 28 H 1.08002 * 119.99630 * 186.15698 * 4 3 2 29 29 H 1.09000 * 109.46812 * 246.02932 * 5 4 3 30 30 H 1.08992 * 109.47068 * 6.02387 * 5 4 3 31 31 H 1.09004 * 109.46715 * 299.99967 * 6 5 4 32 32 H 1.09002 * 109.47611 * 59.99535 * 6 5 4 33 33 H 0.97000 * 119.99666 * 359.97438 * 7 6 5 34 34 H 1.07998 * 119.99786 * 359.97234 * 9 8 7 35 35 H 1.07994 * 119.89964 * 179.97438 * 10 9 8 36 36 H 1.08005 * 119.90047 * 179.97438 * 11 10 9 37 37 H 1.08007 * 120.00034 * 179.97438 * 12 11 10 38 38 H 1.09001 * 109.47548 * 300.00284 * 15 14 13 39 39 H 1.09005 * 109.46899 * 60.00140 * 15 14 13 40 40 H 0.97000 * 119.99846 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0644 1.2740 0.0000 4 6 3.3897 1.2759 0.0950 5 6 4.1493 -0.0253 0.0631 6 6 5.2198 0.0358 -1.0283 7 7 5.9578 -1.2293 -1.0598 8 6 6.9940 -1.4125 -1.9833 9 6 7.3230 -0.3981 -2.8694 10 6 8.3472 -0.5809 -3.7804 11 6 9.0463 -1.7735 -3.8110 12 6 8.7252 -2.7905 -2.9314 13 6 7.7029 -2.6139 -2.0103 14 16 7.2963 -3.9054 -0.8829 15 6 8.4768 -5.2126 -1.3168 16 6 8.2542 -6.4068 -0.4250 17 1 7.4797 -6.3820 0.3272 18 6 9.0386 -7.5314 -0.5703 19 7 8.8439 -8.5738 0.2077 20 14 10.3776 -7.5745 -1.8719 21 1 11.6474 -7.0670 -1.2928 22 1 10.5698 -8.9711 -2.3384 23 1 9.9803 -6.7196 -3.0193 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0045 26 1 1.8687 -0.9354 0.0004 27 1 1.5271 2.2078 -0.0773 28 1 3.9225 2.2100 0.1952 29 1 4.6248 -0.1921 1.0295 30 1 3.4605 -0.8429 -0.1489 31 1 4.7442 0.2027 -1.9948 32 1 5.9086 0.8536 -0.8163 33 1 5.7286 -1.9400 -0.4408 34 1 6.7794 0.5349 -2.8481 35 1 8.6018 0.2102 -4.4701 36 1 9.8450 -1.9112 -4.5249 37 1 9.2731 -3.7209 -2.9583 38 1 8.3309 -5.5033 -2.3572 39 1 9.4935 -4.8433 -1.1819 40 1 9.3960 -9.3648 0.1058 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901984208.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:35 Heat of formation + Delta-G solvation = 37.052505 kcal Electronic energy + Delta-G solvation = -19106.469546 eV Core-core repulsion = 16204.984652 eV Total energy + Delta-G solvation = -2901.484894 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.25547 -37.96283 -36.20420 -35.27238 -33.19172 -32.18823 -31.31067 -30.58837 -28.27018 -25.10995 -24.49265 -23.36669 -22.60713 -22.10405 -19.56411 -19.16688 -18.39738 -17.46346 -17.25409 -16.76694 -16.35450 -15.88493 -15.48822 -15.44767 -15.01403 -14.90346 -14.73838 -14.67163 -14.33702 -13.97452 -13.26101 -13.14803 -13.04659 -12.95592 -12.72804 -12.44951 -12.34503 -12.16336 -11.94245 -11.70360 -11.64573 -11.46320 -10.97983 -10.94303 -10.89182 -10.45932 -9.22023 -8.83650 -8.42607 -7.88653 -6.53052 0.40931 0.47415 0.69721 0.82731 1.30953 1.32411 1.42933 1.83574 2.16809 2.25149 2.57600 2.90100 2.92398 3.83212 3.95988 4.04293 4.15338 4.18213 4.24777 4.37103 4.50481 4.53260 4.55539 4.60351 4.64666 4.71768 4.78280 4.89211 4.98537 5.00419 5.10895 5.23341 5.29392 5.47051 5.47896 5.63210 5.70250 5.79316 5.95808 6.00514 6.03441 6.43683 6.50113 6.70106 7.10038 8.72958 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.015883 B = 0.003548 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.452059 B = 7890.478592 C = 9392.555494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.158 4.158 3 C -0.139 4.139 4 C -0.137 4.137 5 C -0.111 4.111 6 C 0.135 3.865 7 N -0.750 5.750 8 C 0.221 3.779 9 C -0.185 4.185 10 C -0.076 4.076 11 C -0.166 4.166 12 C -0.110 4.110 13 C -0.175 4.175 14 S -0.163 6.163 15 C 0.042 3.958 16 C -0.533 4.533 17 H 0.041 0.959 18 C 0.025 3.975 19 N -0.935 5.935 20 Si 0.948 3.052 21 H -0.260 1.260 22 H -0.274 1.274 23 H -0.247 1.247 24 H 0.105 0.895 25 H 0.110 0.890 26 H 0.110 0.890 27 H 0.131 0.869 28 H 0.135 0.865 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.397 0.603 34 H 0.149 0.851 35 H 0.157 0.843 36 H 0.140 0.860 37 H 0.108 0.892 38 H 0.042 0.958 39 H 0.041 0.959 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.490 23.439 -6.474 25.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.176 4.176 3 C -0.157 4.157 4 C -0.155 4.155 5 C -0.148 4.148 6 C 0.012 3.988 7 N -0.380 5.380 8 C 0.112 3.888 9 C -0.210 4.210 10 C -0.097 4.097 11 C -0.187 4.187 12 C -0.135 4.135 13 C -0.292 4.292 14 S 0.080 5.920 15 C -0.106 4.106 16 C -0.572 4.572 17 H 0.059 0.941 18 C -0.176 4.176 19 N -0.574 5.574 20 Si 0.769 3.231 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.171 1.171 24 H 0.123 0.877 25 H 0.129 0.871 26 H 0.127 0.873 27 H 0.149 0.851 28 H 0.153 0.847 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.232 0.768 34 H 0.166 0.834 35 H 0.174 0.826 36 H 0.158 0.842 37 H 0.126 0.874 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.396 23.320 -5.514 25.739 hybrid contribution 1.354 -1.235 -0.660 1.948 sum -8.043 22.085 -6.174 24.301 Atomic orbital electron populations 1.24577 0.95463 1.02854 0.98327 1.22293 0.96090 0.97459 1.01716 1.22079 0.94949 0.97069 1.01634 1.23270 0.94874 0.98130 0.99249 1.20947 0.97352 0.97503 0.98993 1.21330 0.93050 0.85340 0.99089 1.44968 1.36196 1.18246 1.38587 1.17533 0.88497 0.91787 0.90993 1.20854 1.02495 0.98894 0.98720 1.21269 0.93840 0.97159 0.97399 1.21084 1.02823 0.93929 1.00871 1.21140 0.96473 1.00008 0.95872 1.21522 1.04586 0.98156 1.04925 1.84862 1.49926 1.10891 1.46355 1.21368 0.95645 0.94229 0.99335 1.20607 1.19623 0.98203 1.18747 0.94081 1.25824 0.99470 0.94155 0.98147 1.69998 1.41344 1.05631 1.40378 0.85701 0.79113 0.78582 0.79671 1.18491 1.19854 1.17102 0.87677 0.87142 0.87274 0.85121 0.84732 0.90559 0.90814 0.91711 0.91012 0.76824 0.83372 0.82559 0.84243 0.87409 0.93974 0.94118 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.48 14.43 66.64 0.96 -1.52 16 2 C -0.16 -2.62 9.30 23.43 0.22 -2.40 16 3 C -0.14 -2.01 9.83 23.43 0.23 -1.78 16 4 C -0.14 -1.91 9.59 24.51 0.24 -1.68 16 5 C -0.11 -1.91 5.57 29.85 0.17 -1.75 16 6 C 0.14 2.57 4.90 86.38 0.42 2.99 16 7 N -0.75 -20.43 5.68 -338.84 -1.93 -22.35 16 8 C 0.22 6.82 6.66 38.24 0.25 7.08 16 9 C -0.19 -4.53 9.31 22.38 0.21 -4.33 16 10 C -0.08 -1.72 10.04 22.29 0.22 -1.50 16 11 C -0.17 -4.49 10.04 22.28 0.22 -4.27 16 12 C -0.11 -3.87 9.36 22.39 0.21 -3.66 16 13 C -0.18 -6.52 6.12 22.70 0.14 -6.38 16 14 S -0.16 -7.16 20.37 -56.49 -1.15 -8.31 16 15 C 0.04 2.10 3.16 71.24 0.23 2.32 16 16 C -0.53 -31.44 9.68 25.60 0.25 -31.19 16 17 H 0.04 2.70 7.96 -2.91 -0.02 2.67 16 18 C 0.02 1.44 5.47 84.66 0.46 1.91 16 19 N -0.93 -57.87 13.96 21.45 0.30 -57.57 16 20 Si 0.95 43.24 27.47 68.60 1.88 45.12 16 21 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.25 -10.52 6.54 99.48 0.65 -9.87 16 24 H 0.10 1.35 8.06 -2.91 -0.02 1.33 16 25 H 0.11 1.22 8.05 -2.91 -0.02 1.20 16 26 H 0.11 1.98 5.83 -2.91 -0.02 1.96 16 27 H 0.13 1.43 8.06 -2.91 -0.02 1.41 16 28 H 0.13 1.37 8.06 -2.91 -0.02 1.35 16 29 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 1.40 5.33 -2.39 -0.01 1.39 16 31 H 0.06 1.16 7.95 -2.39 -0.02 1.15 16 32 H 0.07 1.19 7.96 -2.39 -0.02 1.17 16 33 H 0.40 11.92 7.02 -92.71 -0.65 11.27 16 34 H 0.15 2.71 6.74 -2.91 -0.02 2.69 16 35 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 36 H 0.14 3.05 8.06 -2.91 -0.02 3.02 16 37 H 0.11 4.01 5.88 -2.91 -0.02 3.99 16 38 H 0.04 2.05 6.79 -2.39 -0.02 2.03 16 39 H 0.04 1.95 7.19 -2.39 -0.02 1.94 16 40 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -67.91 345.14 3.86 -64.05 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: 0.32 Total: 25.21 kcal Atomic # 6 Polarization: -50.59 SS G_CDS: 4.43 Total: -46.16 kcal Atomic # 7 Polarization: -78.29 SS G_CDS: -1.63 Total: -79.92 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.88 Total: 45.12 kcal Atomic # 16 Polarization: -7.16 SS G_CDS: -1.15 Total: -8.31 kcal Total: -67.91 3.86 -64.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901984208.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.105 kcal (2) G-P(sol) polarization free energy of solvation -67.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds