Wall clock time and date at job start Tue Mar 31 2020 05:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32876 * 1 3 3 C 1.47112 * 119.99845 * 2 1 4 4 C 1.32864 * 120.00138 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.00323 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47336 * 124.99805 * 5 4 3 7 7 N 1.46502 * 109.46905 * 180.02562 * 6 5 4 8 8 C 1.40002 * 119.99446 * 180.02562 * 7 6 5 9 9 C 1.38641 * 120.10374 * 359.97438 * 8 7 6 10 10 C 1.38284 * 120.00818 * 180.02562 * 9 8 7 11 11 C 1.38275 * 120.20418 * 359.97438 * 10 9 8 12 12 C 1.38247 * 120.19312 * 0.02562 * 11 10 9 13 13 C 1.38724 * 119.99820 * 0.02562 * 12 11 10 14 14 S 1.76201 * 120.10569 * 179.97438 * 13 12 11 15 15 C 1.81406 * 102.99596 * 359.97438 * 14 13 12 16 16 C 1.50701 * 109.47044 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99746 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00074 * 180.02562 * 16 15 14 19 19 N 1.31508 * 119.99939 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99906 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47251 * 59.99956 * 20 18 16 22 22 H 1.48503 * 109.47464 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47248 * 299.99972 * 20 18 16 24 24 H 1.07999 * 119.99781 * 179.97438 * 1 2 3 25 25 H 1.07994 * 120.00306 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.99915 * 180.02562 * 2 1 3 27 27 H 1.08007 * 120.00084 * 0.02562 * 3 2 1 28 28 H 1.08002 * 120.00234 * 0.02562 * 4 3 2 29 29 H 1.09006 * 109.46833 * 5.00195 * 5 4 3 30 30 H 1.08998 * 109.46996 * 245.00273 * 5 4 3 31 31 H 1.08997 * 109.46987 * 60.00116 * 6 5 4 32 32 H 1.08993 * 109.47021 * 300.00031 * 6 5 4 33 33 H 0.97001 * 120.00315 * 359.97438 * 7 6 5 34 34 H 1.07997 * 119.99368 * 359.97438 * 9 8 7 35 35 H 1.08004 * 119.90252 * 180.02562 * 10 9 8 36 36 H 1.07996 * 119.90390 * 179.74422 * 11 10 9 37 37 H 1.08007 * 120.00109 * 180.02562 * 12 11 10 38 38 H 1.08999 * 109.47274 * 300.00167 * 15 14 13 39 39 H 1.09004 * 109.46798 * 60.00268 * 15 14 13 40 40 H 0.97006 * 119.99920 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3288 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 3.3929 1.2741 -0.0005 5 6 4.1464 2.5792 0.0001 6 6 5.1184 2.6065 1.1814 7 7 5.8505 3.8755 1.1822 8 6 6.8034 4.1332 2.1750 9 6 7.0556 3.1892 3.1585 10 6 7.9968 3.4459 4.1385 11 6 8.6895 4.6427 4.1412 12 6 8.4447 5.5899 3.1645 13 6 7.5015 5.3413 2.1781 14 16 7.1867 6.5469 0.9323 15 6 8.3195 7.8937 1.3724 16 6 8.1675 9.0211 0.3840 17 1 7.4605 8.9358 -0.4280 18 6 8.9317 10.1611 0.5157 19 7 9.7937 10.2644 1.5035 20 14 8.7438 11.5582 -0.7099 21 1 7.3458 12.0582 -0.6801 22 1 9.6719 12.6604 -0.3503 23 1 9.0648 11.0667 -2.0740 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9352 0.0004 26 1 1.8688 -0.9353 -0.0004 27 1 1.5242 2.2094 0.0004 28 1 3.9330 0.3388 -0.0014 29 1 3.4415 3.4057 0.0905 30 1 4.7038 2.6774 -0.9315 31 1 5.8233 1.7801 1.0910 32 1 4.5610 2.5084 2.1128 33 1 5.6755 4.5369 0.4945 34 1 6.5162 2.2535 3.1598 35 1 8.1922 2.7092 4.9037 36 1 9.4206 4.8399 4.9113 37 1 8.9878 6.5235 3.1693 38 1 8.0836 8.2544 2.3735 39 1 9.3458 7.5269 1.3507 40 1 10.3317 11.0663 1.5959 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000901984214.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:38 Heat of formation + Delta-G solvation = 41.926699 kcal Electronic energy + Delta-G solvation = -18831.338625 eV Core-core repulsion = 15930.065092 eV Total energy + Delta-G solvation = -2901.273533 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.99074 -36.89111 -35.29690 -33.24151 -32.73170 -30.67238 -29.65473 -28.53226 -27.22874 -23.95141 -23.14988 -22.24015 -20.95280 -20.66077 -19.92188 -17.56535 -16.34723 -16.17041 -15.97016 -15.72125 -14.89065 -14.68338 -14.59900 -14.06277 -13.58238 -13.49478 -13.16803 -12.90731 -12.60725 -12.38723 -12.32139 -12.29343 -12.06008 -11.54014 -11.46279 -11.25713 -11.12995 -10.90661 -10.90058 -10.67778 -9.95619 -9.81908 -9.66426 -9.09891 -9.03958 -8.62865 -8.60199 -7.46253 -6.30880 -6.24018 -4.29422 1.05378 1.75732 1.99696 2.57495 2.78839 3.25287 3.28838 3.32587 3.55650 3.81699 4.23242 4.31431 4.48675 4.70315 4.82129 4.95654 5.09607 5.13248 5.19329 5.27062 5.40175 5.42285 5.46594 5.66950 5.72804 5.81750 5.90134 6.02353 6.09162 6.22340 6.32950 6.37873 6.54800 6.59786 6.75053 6.99987 7.01717 7.04705 7.20137 7.61486 7.68707 7.93501 7.96819 8.71200 9.34045 10.87159 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.015858 B = 0.003088 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.291728 B = 9065.379692 C =10697.231407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.127 4.127 3 C -0.139 4.139 4 C -0.132 4.132 5 C -0.106 4.106 6 C 0.134 3.866 7 N -0.747 5.747 8 C 0.223 3.777 9 C -0.189 4.189 10 C -0.094 4.094 11 C -0.160 4.160 12 C -0.089 4.089 13 C -0.136 4.136 14 S -0.181 6.181 15 C 0.080 3.920 16 C -0.518 4.518 17 H 0.067 0.933 18 C 0.068 3.932 19 N -0.889 5.889 20 Si 0.908 3.092 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.273 1.273 24 H 0.100 0.900 25 H 0.098 0.902 26 H 0.112 0.888 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.404 0.596 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.130 0.870 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.202 -18.550 0.612 21.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.145 4.145 3 C -0.157 4.157 4 C -0.150 4.150 5 C -0.143 4.143 6 C 0.010 3.990 7 N -0.380 5.380 8 C 0.115 3.885 9 C -0.214 4.214 10 C -0.116 4.116 11 C -0.181 4.181 12 C -0.114 4.114 13 C -0.253 4.253 14 S 0.063 5.937 15 C -0.067 4.067 16 C -0.558 4.558 17 H 0.085 0.915 18 C -0.137 4.137 19 N -0.527 5.527 20 Si 0.735 3.265 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 H 0.118 0.882 25 H 0.117 0.883 26 H 0.130 0.870 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.241 0.759 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.148 0.852 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.926 -18.536 -0.287 22.043 hybrid contribution 0.830 1.009 0.293 1.339 sum -11.096 -17.528 0.006 20.745 Atomic orbital electron populations 1.24367 0.95671 1.01986 1.00038 1.21999 0.95481 0.96685 1.00350 1.21975 0.94703 0.96872 1.02135 1.23249 0.94874 0.98234 0.98675 1.20886 0.98400 0.95978 0.99060 1.21155 0.93435 0.86663 0.97785 1.44712 1.42593 1.19413 1.31238 1.17289 0.89556 0.92134 0.89481 1.20420 1.03889 0.99437 0.97645 1.20763 0.96102 0.96881 0.97820 1.20800 1.02437 0.94733 1.00149 1.21182 0.96656 0.99865 0.93700 1.21486 1.03119 0.97994 1.02684 1.84876 1.57336 1.15551 1.35895 1.21298 0.94042 0.90952 1.00422 1.20590 1.23491 0.99611 1.12063 0.91497 1.24949 0.94587 0.98269 0.95898 1.69938 1.23585 1.28738 1.30441 0.86393 0.78233 0.80829 0.81089 1.19874 1.20989 1.19877 0.88191 0.88338 0.87038 0.86796 0.86812 0.90602 0.89905 0.92448 0.92451 0.75921 0.86560 0.86740 0.86650 0.85230 0.93930 0.93926 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.23 14.43 28.88 0.42 -0.82 16 2 C -0.13 -0.96 9.83 -37.83 -0.37 -1.33 16 3 C -0.14 -1.14 9.44 -37.84 -0.36 -1.50 16 4 C -0.13 -1.07 9.22 -36.16 -0.33 -1.41 16 5 C -0.11 -0.97 5.78 -27.88 -0.16 -1.13 16 6 C 0.13 1.46 4.90 -4.04 -0.02 1.44 16 7 N -0.75 -10.89 5.68 -58.45 -0.33 -11.22 16 8 C 0.22 3.79 6.66 -83.49 -0.56 3.24 16 9 C -0.19 -2.82 9.31 -39.42 -0.37 -3.19 16 10 C -0.09 -1.36 10.04 -39.55 -0.40 -1.76 16 11 C -0.16 -2.59 10.04 -39.56 -0.40 -2.99 16 12 C -0.09 -1.71 9.36 -39.40 -0.37 -2.08 16 13 C -0.14 -2.68 6.12 -38.92 -0.24 -2.92 16 14 S -0.18 -3.95 20.37 -107.50 -2.19 -6.14 16 15 C 0.08 2.06 4.09 36.01 0.15 2.20 16 16 C -0.52 -14.40 9.13 -34.44 -0.31 -14.71 16 17 H 0.07 1.84 7.71 -52.48 -0.40 1.43 16 18 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 19 N -0.89 -25.56 13.29 55.43 0.74 -24.82 16 20 Si 0.91 21.12 29.54 -169.99 -5.02 16.10 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 24 H 0.10 0.53 8.06 -52.49 -0.42 0.11 16 25 H 0.10 0.62 8.05 -52.49 -0.42 0.20 16 26 H 0.11 0.72 8.06 -52.49 -0.42 0.29 16 27 H 0.11 0.92 7.87 -52.48 -0.41 0.50 16 28 H 0.11 0.81 8.05 -52.49 -0.42 0.38 16 29 H 0.08 0.71 7.82 -51.93 -0.41 0.30 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.59 7.95 -51.93 -0.41 0.18 16 32 H 0.06 0.62 7.95 -51.93 -0.41 0.20 16 33 H 0.40 6.15 7.02 -40.82 -0.29 5.86 16 34 H 0.12 1.44 6.74 -52.49 -0.35 1.09 16 35 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 36 H 0.12 1.62 8.06 -52.49 -0.42 1.19 16 37 H 0.13 2.67 5.88 -52.48 -0.31 2.37 16 38 H 0.04 1.15 7.75 -51.92 -0.40 0.75 16 39 H 0.04 1.15 7.75 -51.92 -0.40 0.75 16 40 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 353.23 15.07 5.32 5.32 Total: -1.00 -29.26 353.23 -10.80 -40.05 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -5.90 Total: 5.90 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: -3.42 Total: -25.19 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.40 Total: -36.04 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -3.95 SS G_CDS: -2.19 Total: -6.14 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.26 -10.80 -40.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901984214.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.982 kcal (2) G-P(sol) polarization free energy of solvation -29.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds