Wall clock time and date at job start Tue Mar 31 2020 05:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32876 * 1 3 3 C 1.47112 * 119.99845 * 2 1 4 4 C 1.32864 * 120.00138 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.00323 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47336 * 124.99805 * 5 4 3 7 7 N 1.46502 * 109.46905 * 180.02562 * 6 5 4 8 8 C 1.40002 * 119.99446 * 180.02562 * 7 6 5 9 9 C 1.38641 * 120.10374 * 359.97438 * 8 7 6 10 10 C 1.38284 * 120.00818 * 180.02562 * 9 8 7 11 11 C 1.38275 * 120.20418 * 359.97438 * 10 9 8 12 12 C 1.38247 * 120.19312 * 0.02562 * 11 10 9 13 13 C 1.38724 * 119.99820 * 0.02562 * 12 11 10 14 14 S 1.76201 * 120.10569 * 179.97438 * 13 12 11 15 15 C 1.81406 * 102.99596 * 359.97438 * 14 13 12 16 16 C 1.50701 * 109.47044 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99746 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00074 * 180.02562 * 16 15 14 19 19 N 1.31508 * 119.99939 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99906 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47251 * 59.99956 * 20 18 16 22 22 H 1.48503 * 109.47464 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47248 * 299.99972 * 20 18 16 24 24 H 1.07999 * 119.99781 * 179.97438 * 1 2 3 25 25 H 1.07994 * 120.00306 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.99915 * 180.02562 * 2 1 3 27 27 H 1.08007 * 120.00084 * 0.02562 * 3 2 1 28 28 H 1.08002 * 120.00234 * 0.02562 * 4 3 2 29 29 H 1.09006 * 109.46833 * 5.00195 * 5 4 3 30 30 H 1.08998 * 109.46996 * 245.00273 * 5 4 3 31 31 H 1.08997 * 109.46987 * 60.00116 * 6 5 4 32 32 H 1.08993 * 109.47021 * 300.00031 * 6 5 4 33 33 H 0.97001 * 120.00315 * 359.97438 * 7 6 5 34 34 H 1.07997 * 119.99368 * 359.97438 * 9 8 7 35 35 H 1.08004 * 119.90252 * 180.02562 * 10 9 8 36 36 H 1.07996 * 119.90390 * 179.74422 * 11 10 9 37 37 H 1.08007 * 120.00109 * 180.02562 * 12 11 10 38 38 H 1.08999 * 109.47274 * 300.00167 * 15 14 13 39 39 H 1.09004 * 109.46798 * 60.00268 * 15 14 13 40 40 H 0.97006 * 119.99920 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3288 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 3.3929 1.2741 -0.0005 5 6 4.1464 2.5792 0.0001 6 6 5.1184 2.6065 1.1814 7 7 5.8505 3.8755 1.1822 8 6 6.8034 4.1332 2.1750 9 6 7.0556 3.1892 3.1585 10 6 7.9968 3.4459 4.1385 11 6 8.6895 4.6427 4.1412 12 6 8.4447 5.5899 3.1645 13 6 7.5015 5.3413 2.1781 14 16 7.1867 6.5469 0.9323 15 6 8.3195 7.8937 1.3724 16 6 8.1675 9.0211 0.3840 17 1 7.4605 8.9358 -0.4280 18 6 8.9317 10.1611 0.5157 19 7 9.7937 10.2644 1.5035 20 14 8.7438 11.5582 -0.7099 21 1 7.3458 12.0582 -0.6801 22 1 9.6719 12.6604 -0.3503 23 1 9.0648 11.0667 -2.0740 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9352 0.0004 26 1 1.8688 -0.9353 -0.0004 27 1 1.5242 2.2094 0.0004 28 1 3.9330 0.3388 -0.0014 29 1 3.4415 3.4057 0.0905 30 1 4.7038 2.6774 -0.9315 31 1 5.8233 1.7801 1.0910 32 1 4.5610 2.5084 2.1128 33 1 5.6755 4.5369 0.4945 34 1 6.5162 2.2535 3.1598 35 1 8.1922 2.7092 4.9037 36 1 9.4206 4.8399 4.9113 37 1 8.9878 6.5235 3.1693 38 1 8.0836 8.2544 2.3735 39 1 9.3458 7.5269 1.3507 40 1 10.3317 11.0663 1.5959 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901984214.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:38 Heat of formation + Delta-G solvation = 27.972553 kcal Electronic energy + Delta-G solvation = -18831.943722 eV Core-core repulsion = 15930.065092 eV Total energy + Delta-G solvation = -2901.878630 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.24638 -37.71867 -36.17919 -35.34694 -33.53950 -32.03671 -30.78755 -30.43703 -28.21394 -25.47367 -24.66092 -23.46436 -22.17451 -21.35140 -20.51180 -19.12731 -18.20236 -17.48058 -17.17798 -16.62336 -16.49212 -15.74527 -15.52072 -15.22008 -14.89239 -14.71706 -14.65681 -14.56621 -14.21813 -13.98625 -13.26875 -13.08107 -13.02534 -12.89302 -12.74886 -12.60344 -12.30696 -12.22153 -11.83814 -11.75400 -11.69585 -11.59188 -10.98154 -10.89932 -10.82135 -10.41265 -9.21260 -8.81717 -8.36495 -7.86334 -6.51394 0.41341 0.48036 0.69193 0.91883 1.38824 1.42143 1.51036 1.88409 2.19815 2.34234 2.57163 2.92105 2.98080 3.83000 3.97521 4.04704 4.12050 4.23305 4.23938 4.47137 4.49913 4.57301 4.57665 4.69644 4.75911 4.85881 4.88034 4.91984 4.96906 5.01480 5.11176 5.27150 5.45089 5.47874 5.52281 5.67226 5.70015 5.79447 5.81924 5.95712 6.02697 6.44171 6.55430 6.72102 7.17108 8.75556 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.015858 B = 0.003088 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.291728 B = 9065.379692 C =10697.231407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.143 4.143 3 C -0.144 4.144 4 C -0.134 4.134 5 C -0.100 4.100 6 C 0.133 3.867 7 N -0.748 5.748 8 C 0.222 3.778 9 C -0.185 4.185 10 C -0.076 4.076 11 C -0.168 4.168 12 C -0.110 4.110 13 C -0.172 4.172 14 S -0.176 6.176 15 C 0.087 3.913 16 C -0.542 4.542 17 H 0.066 0.934 18 C 0.015 3.985 19 N -0.923 5.923 20 Si 0.980 3.020 21 H -0.265 1.265 22 H -0.276 1.276 23 H -0.265 1.265 24 H 0.114 0.886 25 H 0.099 0.901 26 H 0.122 0.878 27 H 0.110 0.890 28 H 0.128 0.872 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.398 0.602 34 H 0.151 0.849 35 H 0.158 0.842 36 H 0.135 0.865 37 H 0.098 0.902 38 H 0.015 0.985 39 H 0.016 0.984 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.411 -20.844 0.677 24.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.161 4.161 3 C -0.162 4.162 4 C -0.152 4.152 5 C -0.137 4.137 6 C 0.010 3.990 7 N -0.379 5.379 8 C 0.113 3.887 9 C -0.209 4.209 10 C -0.096 4.096 11 C -0.189 4.189 12 C -0.135 4.135 13 C -0.289 4.289 14 S 0.067 5.933 15 C -0.060 4.060 16 C -0.581 4.581 17 H 0.084 0.916 18 C -0.186 4.186 19 N -0.561 5.561 20 Si 0.802 3.198 21 H -0.190 1.190 22 H -0.201 1.201 23 H -0.190 1.190 24 H 0.133 0.867 25 H 0.117 0.883 26 H 0.140 0.860 27 H 0.128 0.872 28 H 0.145 0.855 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.233 0.767 34 H 0.169 0.831 35 H 0.176 0.824 36 H 0.153 0.847 37 H 0.117 0.883 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.153 -20.873 -0.211 24.672 hybrid contribution 1.137 1.541 0.367 1.950 sum -12.016 -19.332 0.155 22.763 Atomic orbital electron populations 1.24575 0.95632 1.02790 0.98712 1.22126 0.95877 0.96752 1.01338 1.22101 0.94960 0.97267 1.01838 1.23225 0.94781 0.98055 0.99162 1.20804 0.97980 0.96563 0.98349 1.21366 0.93707 0.85139 0.98811 1.44939 1.42128 1.20539 1.30292 1.17511 0.89405 0.91376 0.90455 1.20857 1.03680 0.99940 0.96469 1.21262 0.94076 0.96410 0.97890 1.21058 1.03274 0.94861 0.99713 1.21110 0.97210 0.99840 0.95336 1.21488 1.05634 0.98792 1.02974 1.84464 1.56194 1.15029 1.37619 1.20893 0.93813 0.92505 0.98817 1.20942 1.23905 1.00761 1.12515 0.91562 1.25953 0.93904 1.00971 0.97786 1.70061 1.24260 1.29661 1.32107 0.85283 0.78631 0.77292 0.78572 1.18960 1.20072 1.18957 0.86731 0.88305 0.85968 0.87162 0.85454 0.91202 0.90077 0.91063 0.91702 0.76694 0.83104 0.82411 0.84669 0.88342 0.96632 0.96604 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 14.43 66.64 0.96 -1.12 16 2 C -0.14 -1.88 9.83 23.42 0.23 -1.65 16 3 C -0.14 -2.14 9.44 23.42 0.22 -1.92 16 4 C -0.13 -1.91 9.22 24.51 0.23 -1.68 16 5 C -0.10 -1.67 5.78 29.85 0.17 -1.49 16 6 C 0.13 2.57 4.90 86.38 0.42 2.99 16 7 N -0.75 -20.96 5.68 -338.82 -1.93 -22.89 16 8 C 0.22 7.28 6.66 38.25 0.25 7.54 16 9 C -0.19 -4.90 9.31 22.38 0.21 -4.70 16 10 C -0.08 -1.92 10.04 22.29 0.22 -1.70 16 11 C -0.17 -5.26 10.04 22.28 0.22 -5.04 16 12 C -0.11 -4.44 9.36 22.39 0.21 -4.23 16 13 C -0.17 -6.98 6.12 22.70 0.14 -6.84 16 14 S -0.18 -8.06 20.37 -56.49 -1.15 -9.21 16 15 C 0.09 4.83 4.09 71.24 0.29 5.12 16 16 C -0.54 -31.43 9.13 25.60 0.23 -31.20 16 17 H 0.07 3.75 7.71 -2.91 -0.02 3.73 16 18 C 0.02 0.86 5.46 84.65 0.46 1.33 16 19 N -0.92 -54.96 13.29 21.44 0.28 -54.67 16 20 Si 0.98 43.83 29.54 68.60 2.03 45.86 16 21 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 22 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 23 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 24 H 0.11 0.96 8.06 -2.91 -0.02 0.94 16 25 H 0.10 1.11 8.05 -2.91 -0.02 1.08 16 26 H 0.12 1.30 8.06 -2.91 -0.02 1.27 16 27 H 0.11 1.67 7.87 -2.91 -0.02 1.64 16 28 H 0.13 1.46 8.05 -2.91 -0.02 1.44 16 29 H 0.07 1.25 7.82 -2.38 -0.02 1.23 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.22 7.95 -2.39 -0.02 1.20 16 32 H 0.06 1.19 7.95 -2.39 -0.02 1.17 16 33 H 0.40 12.05 7.02 -92.71 -0.65 11.40 16 34 H 0.15 2.97 6.74 -2.91 -0.02 2.95 16 35 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 36 H 0.14 3.61 8.06 -2.91 -0.02 3.58 16 37 H 0.10 4.47 5.88 -2.91 -0.02 4.46 16 38 H 0.02 0.91 7.75 -2.39 -0.02 0.89 16 39 H 0.02 0.93 7.75 -2.39 -0.02 0.91 16 40 H 0.27 15.06 8.31 -92.70 -0.77 14.29 16 Total: -1.00 -65.93 353.23 4.08 -61.85 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.36 Total: 23.65 kcal Atomic # 6 Polarization: -49.07 SS G_CDS: 4.48 Total: -44.59 kcal Atomic # 7 Polarization: -75.92 SS G_CDS: -1.64 Total: -77.56 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -8.06 SS G_CDS: -1.15 Total: -9.21 kcal Total: -65.93 4.08 -61.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901984214.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.824 kcal (2) G-P(sol) polarization free energy of solvation -65.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds