Wall clock time and date at job start Tue Mar 31 2020 06:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99830 * 2 1 4 4 H 1.48499 * 109.47502 * 270.00347 * 3 2 1 5 5 H 1.48507 * 109.47078 * 30.00266 * 3 2 1 6 6 H 1.48503 * 109.46936 * 149.99992 * 3 2 1 7 7 C 1.37869 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.08010 * 120.00244 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00313 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47595 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47596 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47551 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00199 * 180.02562 * 12 11 10 14 14 O 1.21553 * 119.99924 * 359.97438 * 13 12 11 15 15 C 1.47850 * 119.99831 * 180.27510 * 13 12 11 16 16 C 1.39460 * 120.01376 * 359.44379 * 15 13 12 17 17 C 1.37939 * 119.69760 * 179.79561 * 16 15 13 18 18 C 1.38208 * 120.05447 * 0.58189 * 17 16 15 19 19 C 1.38755 * 120.61529 * 359.77248 * 18 17 16 20 20 C 1.37663 * 119.86231 * 359.77120 * 19 18 17 21 21 C 1.50714 * 121.42224 * 180.63691 * 20 19 18 22 22 C 1.52968 * 109.77933 * 342.80711 * 21 20 19 23 23 O 1.43211 * 108.47875 * 49.12765 * 22 21 20 24 24 C 1.42718 * 113.13545 * 289.45135 * 23 22 21 25 25 H 0.97000 * 120.00464 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47333 * 59.99564 * 9 7 2 27 27 H 1.09002 * 109.47271 * 299.99998 * 9 7 2 28 28 H 1.09007 * 109.47134 * 60.00156 * 10 9 7 29 29 H 1.09003 * 109.47604 * 300.00242 * 10 9 7 30 30 H 1.08998 * 109.47059 * 60.00121 * 11 10 9 31 31 H 1.08997 * 109.47280 * 300.00191 * 11 10 9 32 32 H 0.97001 * 120.00074 * 359.97438 * 12 11 10 33 33 H 1.08000 * 120.15304 * 0.02562 * 16 15 13 34 34 H 1.08000 * 119.97512 * 180.32138 * 17 16 15 35 35 H 1.08000 * 119.69418 * 179.75616 * 18 17 16 36 36 H 1.09004 * 109.42247 * 102.90054 * 21 20 19 37 37 H 1.08999 * 109.42427 * 222.71499 * 21 20 19 38 38 H 1.08993 * 109.63810 * 289.42792 * 22 21 20 39 39 H 1.09006 * 109.80776 * 168.92344 * 22 21 20 40 40 H 1.08996 * 109.33666 * 291.62293 * 24 23 22 41 41 H 1.09001 * 109.33373 * 172.11314 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1939 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 6 5.5515 -2.6364 -0.0022 12 7 6.0399 -4.0176 -0.0027 13 6 7.3650 -4.2638 -0.0033 14 8 8.1549 -3.3399 -0.0039 15 6 7.8579 -5.6577 -0.0099 16 6 6.9519 -6.7180 -0.0039 17 6 7.4188 -8.0159 -0.0144 18 6 8.7788 -8.2623 -0.0188 19 6 9.6869 -7.2132 -0.0173 20 6 9.2330 -5.9136 -0.0163 21 6 10.1880 -4.7477 -0.0290 22 6 11.5840 -5.2175 0.3838 23 8 11.9164 -6.3809 -0.3824 24 6 11.1595 -7.5323 -0.0108 25 1 -0.4851 0.8400 0.0004 26 1 3.8752 -0.6803 0.8888 27 1 3.8745 -0.6799 -0.8911 28 1 3.6579 -3.1505 -0.8908 29 1 3.6586 -3.1501 0.8892 30 1 5.9156 -2.1223 0.8873 31 1 5.9142 -2.1229 -0.8926 32 1 5.4097 -4.7549 -0.0019 33 1 5.8896 -6.5238 0.0052 34 1 6.7212 -8.8403 -0.0151 35 1 9.1379 -9.2808 -0.0230 36 1 10.2301 -4.3246 -1.0327 37 1 9.8404 -3.9868 0.6697 38 1 11.5883 -5.4646 1.4453 39 1 12.3117 -4.4299 0.1882 40 1 11.4553 -7.8515 0.9886 41 1 11.3575 -8.3379 -0.7178 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931968914.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:18 Heat of formation + Delta-G solvation = -68.772175 kcal Electronic energy + Delta-G solvation = -22072.509829 eV Core-core repulsion = 18723.683162 eV Total energy + Delta-G solvation = -3348.826667 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.94459 -39.23490 -37.63022 -35.70273 -33.52955 -33.03930 -32.27005 -31.32604 -29.90493 -27.27024 -25.90601 -24.34807 -23.81175 -22.45989 -21.00773 -20.33647 -19.86745 -17.83103 -16.93634 -16.66336 -16.34919 -16.11676 -15.61786 -15.59364 -15.43039 -14.65264 -14.33461 -14.26366 -13.97152 -13.50883 -13.37424 -12.85833 -12.73627 -12.64052 -12.22854 -12.07022 -11.98558 -11.89516 -11.73147 -11.11363 -10.93649 -10.88089 -10.28493 -10.08864 -9.92812 -9.76872 -9.40594 -9.25480 -9.22608 -8.96654 -8.81286 -8.57825 -6.08550 -4.07532 0.57975 0.98600 2.72900 3.21031 3.29662 3.37331 3.41229 3.53929 3.60667 4.26539 4.39308 4.42347 4.48364 4.59406 4.74681 4.91294 4.96857 4.98944 5.14128 5.20969 5.25496 5.38035 5.45613 5.56302 5.60778 5.62605 5.67323 5.94236 5.96328 5.98226 6.04590 6.22196 6.35844 6.39992 6.54974 6.64785 6.74802 6.78926 7.19245 7.32826 7.54793 7.73739 8.22240 8.47749 8.94985 9.53598 11.04676 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.031701 B = 0.002820 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.051020 B = 9928.235640 C =10754.867608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.114 4.114 11 C 0.114 3.886 12 N -0.720 5.720 13 C 0.552 3.448 14 O -0.536 6.536 15 C -0.133 4.133 16 C -0.081 4.081 17 C -0.130 4.130 18 C -0.088 4.088 19 C -0.135 4.135 20 C -0.012 4.012 21 C -0.120 4.120 22 C 0.054 3.946 23 O -0.378 6.378 24 C 0.104 3.896 25 H 0.264 0.736 26 H 0.019 0.981 27 H 0.015 0.985 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.399 0.601 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.091 0.909 37 H 0.116 0.884 38 H 0.054 0.946 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.274 -18.047 1.158 27.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.152 4.152 11 C -0.008 4.008 12 N -0.370 5.370 13 C 0.339 3.661 14 O -0.415 6.415 15 C -0.136 4.136 16 C -0.100 4.100 17 C -0.148 4.148 18 C -0.106 4.106 19 C -0.136 4.136 20 C -0.013 4.013 21 C -0.156 4.156 22 C -0.022 4.022 23 O -0.296 6.296 24 C 0.028 3.972 25 H 0.073 0.927 26 H 0.037 0.963 27 H 0.033 0.967 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.234 0.766 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.109 0.891 37 H 0.134 0.866 38 H 0.072 0.928 39 H 0.119 0.881 40 H 0.083 0.917 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 21.793 -17.226 1.013 27.797 hybrid contribution -0.493 0.453 0.157 0.688 sum 21.300 -16.773 1.169 27.137 Atomic orbital electron populations 1.69909 1.06324 1.26992 1.50944 1.25026 0.94751 0.99251 0.94438 0.86774 0.80394 0.83508 0.78608 1.20224 1.21354 1.18895 1.21088 0.89290 0.94520 1.51175 0.91014 1.19497 0.97295 0.91384 0.96688 1.21717 0.90545 1.01164 1.01769 1.21693 0.96220 0.80805 1.02114 1.46120 1.06438 1.10216 1.74271 1.18248 0.82668 0.88321 0.76842 1.90707 1.54686 1.45936 1.50206 1.19936 0.93658 0.93351 1.06678 1.21359 0.99394 0.92423 0.96842 1.21030 0.95570 0.96704 1.01486 1.21166 0.93066 0.98638 0.97737 1.20235 0.97091 0.92942 1.03302 1.19580 0.92861 0.94264 0.94622 1.21459 0.92697 0.96216 1.05264 1.22821 0.96584 0.87887 0.94917 1.88065 1.61310 1.18851 1.61363 1.21388 0.85866 0.88960 1.01026 0.92669 0.96288 0.96710 0.92085 0.92062 0.91572 0.91561 0.76632 0.85214 0.85099 0.85426 0.89107 0.86592 0.92789 0.88109 0.91708 0.87739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.52 -14.63 9.66 -34.45 -0.33 -14.96 16 8 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 9 C -0.01 -0.25 4.04 -27.89 -0.11 -0.36 16 10 C -0.11 -2.09 5.27 -26.73 -0.14 -2.23 16 11 C 0.11 1.86 5.67 -4.04 -0.02 1.83 16 12 N -0.72 -9.90 5.51 -61.25 -0.34 -10.24 16 13 C 0.55 8.04 7.73 -12.33 -0.10 7.95 16 14 O -0.54 -9.18 13.17 5.32 0.07 -9.11 16 15 C -0.13 -1.63 5.88 -104.90 -0.62 -2.25 16 16 C -0.08 -0.79 9.54 -39.24 -0.37 -1.17 16 17 C -0.13 -1.05 10.03 -39.70 -0.40 -1.45 16 18 C -0.09 -0.70 9.66 -39.40 -0.38 -1.08 16 19 C -0.14 -1.32 5.80 -104.65 -0.61 -1.92 16 20 C -0.01 -0.15 5.81 -104.21 -0.61 -0.75 16 21 C -0.12 -1.41 4.55 -27.89 -0.13 -1.54 16 22 C 0.05 0.52 6.85 37.14 0.25 0.77 16 23 O -0.38 -3.97 10.80 -35.23 -0.38 -4.35 16 24 C 0.10 0.85 6.66 35.99 0.24 1.09 16 25 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 26 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 27 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.40 4.45 6.50 -40.82 -0.27 4.19 16 33 H 0.13 1.01 6.39 -52.49 -0.34 0.68 16 34 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 36 H 0.09 1.17 8.10 -51.93 -0.42 0.75 16 37 H 0.12 1.52 5.99 -51.93 -0.31 1.21 16 38 H 0.05 0.46 8.07 -51.93 -0.42 0.04 16 39 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 333.51 15.07 5.03 5.03 Total: -1.00 -33.05 333.51 -8.84 -41.89 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -5.91 Total: 0.92 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -3.42 Total: -14.23 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.44 Total: -37.10 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -0.31 Total: -13.46 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.05 -8.84 -41.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931968914.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.883 kcal (2) G-P(sol) polarization free energy of solvation -33.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds