Wall clock time and date at job start Tue Mar 31 2020 06:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99830 * 2 1 4 4 H 1.48499 * 109.47502 * 270.00347 * 3 2 1 5 5 H 1.48507 * 109.47078 * 30.00266 * 3 2 1 6 6 H 1.48503 * 109.46936 * 149.99992 * 3 2 1 7 7 C 1.37869 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.08010 * 120.00244 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00313 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47595 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47596 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47551 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00199 * 180.02562 * 12 11 10 14 14 O 1.21553 * 119.99924 * 359.97438 * 13 12 11 15 15 C 1.47850 * 119.99831 * 180.27510 * 13 12 11 16 16 C 1.39460 * 120.01376 * 359.44379 * 15 13 12 17 17 C 1.37939 * 119.69760 * 179.79561 * 16 15 13 18 18 C 1.38208 * 120.05447 * 0.58189 * 17 16 15 19 19 C 1.38755 * 120.61529 * 359.77248 * 18 17 16 20 20 C 1.37663 * 119.86231 * 359.77120 * 19 18 17 21 21 C 1.50714 * 121.42224 * 180.63691 * 20 19 18 22 22 C 1.52968 * 109.77933 * 342.80711 * 21 20 19 23 23 O 1.43211 * 108.47875 * 49.12765 * 22 21 20 24 24 C 1.42718 * 113.13545 * 289.45135 * 23 22 21 25 25 H 0.97000 * 120.00464 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47333 * 59.99564 * 9 7 2 27 27 H 1.09002 * 109.47271 * 299.99998 * 9 7 2 28 28 H 1.09007 * 109.47134 * 60.00156 * 10 9 7 29 29 H 1.09003 * 109.47604 * 300.00242 * 10 9 7 30 30 H 1.08998 * 109.47059 * 60.00121 * 11 10 9 31 31 H 1.08997 * 109.47280 * 300.00191 * 11 10 9 32 32 H 0.97001 * 120.00074 * 359.97438 * 12 11 10 33 33 H 1.08000 * 120.15304 * 0.02562 * 16 15 13 34 34 H 1.08000 * 119.97512 * 180.32138 * 17 16 15 35 35 H 1.08000 * 119.69418 * 179.75616 * 18 17 16 36 36 H 1.09004 * 109.42247 * 102.90054 * 21 20 19 37 37 H 1.08999 * 109.42427 * 222.71499 * 21 20 19 38 38 H 1.08993 * 109.63810 * 289.42792 * 22 21 20 39 39 H 1.09006 * 109.80776 * 168.92344 * 22 21 20 40 40 H 1.08996 * 109.33666 * 291.62293 * 24 23 22 41 41 H 1.09001 * 109.33373 * 172.11314 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1939 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 6 5.5515 -2.6364 -0.0022 12 7 6.0399 -4.0176 -0.0027 13 6 7.3650 -4.2638 -0.0033 14 8 8.1549 -3.3399 -0.0039 15 6 7.8579 -5.6577 -0.0099 16 6 6.9519 -6.7180 -0.0039 17 6 7.4188 -8.0159 -0.0144 18 6 8.7788 -8.2623 -0.0188 19 6 9.6869 -7.2132 -0.0173 20 6 9.2330 -5.9136 -0.0163 21 6 10.1880 -4.7477 -0.0290 22 6 11.5840 -5.2175 0.3838 23 8 11.9164 -6.3809 -0.3824 24 6 11.1595 -7.5323 -0.0108 25 1 -0.4851 0.8400 0.0004 26 1 3.8752 -0.6803 0.8888 27 1 3.8745 -0.6799 -0.8911 28 1 3.6579 -3.1505 -0.8908 29 1 3.6586 -3.1501 0.8892 30 1 5.9156 -2.1223 0.8873 31 1 5.9142 -2.1229 -0.8926 32 1 5.4097 -4.7549 -0.0019 33 1 5.8896 -6.5238 0.0052 34 1 6.7212 -8.8403 -0.0151 35 1 9.1379 -9.2808 -0.0230 36 1 10.2301 -4.3246 -1.0327 37 1 9.8404 -3.9868 0.6697 38 1 11.5883 -5.4646 1.4453 39 1 12.3117 -4.4299 0.1882 40 1 11.4553 -7.8515 0.9886 41 1 11.3575 -8.3379 -0.7178 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931968914.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:17 Heat of formation + Delta-G solvation = -90.484010 kcal Electronic energy + Delta-G solvation = -22073.451325 eV Core-core repulsion = 18723.683162 eV Total energy + Delta-G solvation = -3349.768163 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.79462 -40.21959 -38.38572 -37.10586 -35.26685 -33.84797 -33.63779 -32.58372 -30.76161 -28.90784 -26.57978 -25.54560 -24.65282 -23.82209 -22.34697 -21.46907 -20.87731 -19.07550 -18.58723 -17.60659 -17.20277 -16.94773 -16.78907 -16.62425 -16.21268 -16.19134 -15.67989 -15.36490 -14.98880 -14.78035 -14.42567 -14.25870 -13.83787 -13.67456 -13.60969 -13.30663 -12.93258 -12.79657 -12.72623 -12.68982 -12.44148 -11.91408 -11.77854 -11.64459 -11.60421 -11.34832 -11.03089 -10.77392 -10.42932 -10.24148 -9.78911 -9.65451 -8.30520 -6.34523 -0.20888 0.27056 1.36154 1.37695 1.49410 1.78629 2.10573 2.35341 2.73576 2.91136 3.05290 3.59427 3.61901 3.68528 3.89817 4.03045 4.07041 4.16953 4.19969 4.31707 4.38769 4.47118 4.49929 4.55674 4.73350 4.78831 4.81317 4.85750 4.88738 4.93916 5.01412 5.09029 5.28527 5.34056 5.37847 5.46421 5.52737 5.53399 5.63744 5.86703 6.10554 6.26025 6.48152 6.73518 7.13316 7.30441 8.85892 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.031701 B = 0.002820 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.051020 B = 9928.235640 C =10754.867608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.005 3.995 3 Si 0.947 3.053 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.248 1.248 7 C -0.531 4.531 8 H 0.038 0.962 9 C -0.012 4.012 10 C -0.101 4.101 11 C 0.128 3.872 12 N -0.713 5.713 13 C 0.548 3.452 14 O -0.570 6.570 15 C -0.157 4.157 16 C -0.085 4.085 17 C -0.127 4.127 18 C -0.078 4.078 19 C -0.142 4.142 20 C -0.038 4.038 21 C -0.116 4.116 22 C 0.059 3.941 23 O -0.395 6.395 24 C 0.099 3.901 25 H 0.266 0.734 26 H 0.021 0.979 27 H 0.019 0.981 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.412 0.588 33 H 0.145 0.855 34 H 0.163 0.837 35 H 0.165 0.835 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.110 0.890 40 H 0.084 0.916 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.956 -20.016 1.347 30.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.771 3.229 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.171 1.171 7 C -0.569 4.569 8 H 0.056 0.944 9 C -0.050 4.050 10 C -0.138 4.138 11 C 0.004 3.996 12 N -0.365 5.365 13 C 0.337 3.663 14 O -0.451 6.451 15 C -0.160 4.160 16 C -0.104 4.104 17 C -0.144 4.144 18 C -0.096 4.096 19 C -0.143 4.143 20 C -0.039 4.039 21 C -0.152 4.152 22 C -0.018 4.018 23 O -0.314 6.314 24 C 0.023 3.977 25 H 0.075 0.925 26 H 0.040 0.960 27 H 0.038 0.962 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.249 0.751 33 H 0.163 0.837 34 H 0.180 0.820 35 H 0.182 0.818 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.084 0.916 39 H 0.128 0.872 40 H 0.102 0.898 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 23.477 -19.233 1.203 30.373 hybrid contribution -1.065 0.910 0.094 1.403 sum 22.413 -18.323 1.297 28.978 Atomic orbital electron populations 1.70053 1.08212 1.28156 1.52670 1.25976 0.95589 1.03425 0.94209 0.85702 0.79526 0.78527 0.79178 1.19274 1.21012 1.17124 1.21458 0.91867 0.93285 1.50281 0.94368 1.19459 0.94107 0.94571 0.96833 1.21488 0.91868 0.98267 1.02225 1.21337 0.94487 0.82232 1.01549 1.45933 1.06719 1.09584 1.74215 1.18713 0.82339 0.89312 0.75905 1.90692 1.55462 1.47256 1.51740 1.19839 0.94442 0.92361 1.09335 1.21612 0.99831 0.92630 0.96308 1.21450 0.96403 0.96721 0.99874 1.21616 0.92756 0.99836 0.95375 1.20514 0.98450 0.92404 1.02897 1.19743 0.92760 0.95264 0.96160 1.21299 0.94417 0.96148 1.03376 1.22809 0.95350 0.88187 0.95408 1.88036 1.61805 1.19571 1.61941 1.21676 0.84642 0.88606 1.02816 0.92485 0.96044 0.96219 0.91692 0.91613 0.92171 0.92255 0.75076 0.83720 0.81957 0.81794 0.91378 0.88680 0.91607 0.87163 0.89797 0.85493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.34 13.96 21.44 0.30 -59.04 16 2 C 0.00 0.29 5.47 84.65 0.46 0.75 16 3 Si 0.95 44.38 27.47 68.60 1.88 46.27 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 7 C -0.53 -30.09 9.66 25.60 0.25 -29.84 16 8 H 0.04 2.35 7.99 -2.91 -0.02 2.32 16 9 C -0.01 -0.53 4.04 29.84 0.12 -0.41 16 10 C -0.10 -3.62 5.27 30.59 0.16 -3.46 16 11 C 0.13 4.08 5.67 86.38 0.49 4.57 16 12 N -0.71 -19.25 5.51 -465.98 -2.57 -21.82 16 13 C 0.55 16.16 7.73 86.79 0.67 16.83 16 14 O -0.57 -20.30 13.17 -3.88 -0.05 -20.35 16 15 C -0.16 -3.77 5.88 -20.04 -0.12 -3.88 16 16 C -0.09 -1.48 9.54 22.49 0.21 -1.26 16 17 C -0.13 -1.59 10.03 22.19 0.22 -1.37 16 18 C -0.08 -0.94 9.66 22.39 0.22 -0.72 16 19 C -0.14 -2.45 5.80 -19.88 -0.12 -2.57 16 20 C -0.04 -0.89 5.81 -19.60 -0.11 -1.01 16 21 C -0.12 -2.84 4.55 29.84 0.14 -2.70 16 22 C 0.06 1.10 6.85 71.97 0.49 1.59 16 23 O -0.39 -7.77 10.80 -148.98 -1.61 -9.38 16 24 C 0.10 1.35 6.66 71.23 0.47 1.82 16 25 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 26 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 27 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 28 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 29 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.41 8.72 6.50 -92.71 -0.60 8.12 16 33 H 0.15 1.93 6.39 -2.91 -0.02 1.91 16 34 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 35 H 0.16 0.77 8.06 -2.91 -0.02 0.75 16 36 H 0.07 1.90 8.10 -2.38 -0.02 1.88 16 37 H 0.10 2.69 5.99 -2.39 -0.01 2.67 16 38 H 0.07 1.05 8.07 -2.39 -0.02 1.03 16 39 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 40 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -73.44 333.51 1.90 -71.54 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.38 Total: 14.44 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: 3.56 Total: -21.67 kcal Atomic # 7 Polarization: -78.59 SS G_CDS: -2.27 Total: -80.85 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -1.66 Total: -29.73 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.88 Total: 46.27 kcal Total: -73.44 1.90 -71.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931968914.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.940 kcal (2) G-P(sol) polarization free energy of solvation -73.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds