Wall clock time and date at job start Tue Mar 31 2020 06:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81405 * 102.99706 * 2 1 4 4 C 1.53006 * 109.46817 * 180.02562 * 3 2 1 5 5 C 1.53125 * 109.51968 * 294.87466 * 4 3 2 6 6 C 1.53042 * 109.26930 * 182.50454 * 5 4 3 7 7 N 1.46847 * 109.57942 * 59.08505 * 6 5 4 8 8 C 1.46898 * 111.00278 * 174.18795 * 7 6 5 9 9 C 1.52994 * 109.47209 * 314.21067 * 8 7 6 10 10 C 1.52996 * 109.47173 * 179.97438 * 9 8 7 11 11 S 1.81002 * 109.47207 * 179.97438 * 10 9 8 12 12 C 1.76199 * 100.00044 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00441 * 0.02562 * 12 11 10 14 14 C 1.38804 * 120.00204 * 180.02562 * 12 11 10 15 15 N 1.31626 * 119.99881 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99978 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47356 * 60.00204 * 16 14 12 18 18 H 1.48505 * 109.47180 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47284 * 299.99864 * 16 14 12 20 20 C 1.46847 * 111.19491 * 298.28921 * 7 6 5 21 21 C 1.53036 * 109.52711 * 61.73715 * 20 7 6 22 22 H 1.09001 * 109.47190 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47089 * 299.99939 * 1 2 3 24 24 H 1.09004 * 109.47568 * 59.99949 * 1 2 3 25 25 H 1.09000 * 109.47133 * 299.99843 * 3 2 1 26 26 H 1.08998 * 109.47280 * 60.00592 * 3 2 1 27 27 H 1.09005 * 109.52161 * 54.99633 * 4 3 2 28 28 H 1.09005 * 109.50034 * 302.37940 * 5 4 3 29 29 H 1.08997 * 109.50351 * 62.50155 * 5 4 3 30 30 H 1.09002 * 109.41280 * 299.06468 * 6 5 4 31 31 H 1.09002 * 109.45295 * 179.12417 * 6 5 4 32 32 H 1.09000 * 109.47022 * 74.21076 * 8 7 6 33 33 H 1.09002 * 109.46859 * 194.20693 * 8 7 6 34 34 H 1.09000 * 109.47136 * 299.99939 * 9 8 7 35 35 H 1.09002 * 109.47515 * 60.00028 * 9 8 7 36 36 H 1.09000 * 109.47225 * 300.00111 * 10 9 8 37 37 H 1.09005 * 109.47244 * 60.00253 * 10 9 8 38 38 H 0.96997 * 120.00304 * 180.02562 * 15 14 12 39 39 H 1.09004 * 109.45954 * 301.72278 * 20 7 6 40 40 H 1.08998 * 109.45690 * 181.75255 * 20 7 6 41 41 H 1.09004 * 109.50332 * 180.87667 * 21 20 7 42 42 H 1.09003 * 109.49841 * 60.76544 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7423 1.9400 -0.0006 5 6 4.3197 1.3943 1.3084 6 6 5.8323 1.6262 1.3287 7 7 6.1116 3.0629 1.2095 8 6 7.5469 3.3348 1.3636 9 6 8.0873 2.5566 2.5648 10 6 9.5824 2.8393 2.7249 11 16 10.2216 1.9191 4.1465 12 6 11.9116 2.4149 4.0971 13 1 12.2524 3.0964 3.3317 14 6 12.8052 1.9297 5.0420 15 7 12.3901 1.0987 5.9746 16 14 14.5968 2.4559 4.9900 17 1 14.6840 3.9309 5.1382 18 1 15.3372 1.8019 6.0988 19 1 15.1937 2.0527 3.6914 20 6 5.6081 3.5979 -0.0620 21 6 4.0886 3.4264 -0.1233 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8030 2.2372 -0.8900 26 1 1.8031 2.2372 0.8900 27 1 4.1703 1.3956 -0.8424 28 1 3.8617 1.9116 2.1516 29 1 4.1132 0.3265 1.3800 30 1 6.2912 1.0965 0.4938 31 1 6.2442 1.2528 2.2662 32 1 8.0745 3.0237 0.4619 33 1 7.6993 4.4022 1.5237 34 1 7.5597 2.8676 3.4665 35 1 7.9349 1.4892 2.4047 36 1 10.1097 2.5279 1.8232 37 1 9.7353 3.9066 2.8850 38 1 13.0144 0.7598 6.6351 39 1 6.0681 3.0590 -0.8904 40 1 5.8573 4.6566 -0.1346 41 1 3.7171 3.8095 -1.0738 42 1 3.6270 3.9765 0.6968 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932591505.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:26 Heat of formation + Delta-G solvation = -26.249382 kcal Electronic energy + Delta-G solvation = -18317.902890 eV Core-core repulsion = 15549.116972 eV Total energy + Delta-G solvation = -2768.785918 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 289.123 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.38279 -35.65189 -32.50591 -32.34427 -30.91858 -29.43351 -28.34961 -25.69959 -24.75837 -23.56324 -22.25942 -20.48582 -19.79217 -17.44544 -16.52403 -16.14536 -15.40778 -14.96194 -14.78427 -14.74410 -14.57185 -14.34717 -14.02859 -13.77624 -13.64344 -13.35500 -12.86455 -12.71373 -12.52369 -12.10513 -11.91000 -11.58257 -11.32809 -11.28516 -11.03785 -10.96661 -10.81705 -10.70849 -10.58444 -10.51537 -10.21794 -10.02252 -9.49460 -9.02794 -8.27689 -8.25854 -7.96687 -6.49968 -6.20171 -3.90269 1.35571 2.28392 3.23335 3.24904 3.29415 3.56782 3.95571 4.25121 4.38517 4.45807 4.64082 4.75432 4.78276 4.99866 5.08325 5.14999 5.15563 5.23917 5.26277 5.32531 5.36237 5.38419 5.46796 5.54474 5.61658 5.67293 5.73535 5.79374 5.87968 5.93070 5.99684 6.03503 6.20244 6.25417 6.36829 6.61945 6.76602 7.13618 7.15555 7.62637 8.38902 9.25835 10.87977 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.037228 B = 0.002408 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.937974 B =11626.652861 C =12213.744214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.262 6.262 3 C -0.077 4.077 4 C -0.073 4.073 5 C -0.111 4.111 6 C 0.047 3.953 7 N -0.537 5.537 8 C 0.060 3.940 9 C -0.101 4.101 10 C -0.112 4.112 11 S -0.133 6.133 12 C -0.516 4.516 13 H 0.071 0.929 14 C 0.070 3.930 15 N -0.870 5.870 16 Si 0.918 3.082 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 C 0.056 3.944 21 C -0.105 4.105 22 H 0.099 0.901 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.031 0.969 31 H 0.090 0.910 32 H 0.031 0.969 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.268 0.732 39 H 0.031 0.969 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.376 2.289 -13.850 26.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.035 6.035 3 C -0.225 4.225 4 C -0.093 4.093 5 C -0.149 4.149 6 C -0.081 4.081 7 N -0.262 5.262 8 C -0.068 4.068 9 C -0.139 4.139 10 C -0.261 4.261 11 S 0.096 5.904 12 C -0.664 4.664 13 H 0.090 0.910 14 C -0.138 4.138 15 N -0.505 5.505 16 Si 0.745 3.255 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.200 1.200 20 C -0.072 4.072 21 C -0.145 4.145 22 H 0.118 0.882 23 H 0.095 0.905 24 H 0.093 0.907 25 H 0.097 0.903 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.050 0.950 31 H 0.108 0.892 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.050 0.950 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -22.447 0.828 -12.584 25.747 hybrid contribution 1.336 1.770 -1.560 2.711 sum -21.111 2.598 -14.144 25.543 Atomic orbital electron populations 1.23383 0.94776 1.06430 1.04723 1.87034 1.06720 1.11798 1.97994 1.23516 1.00307 0.93966 1.04757 1.21014 0.91545 0.97067 0.99635 1.21711 0.95092 1.01341 0.96762 1.22249 0.95773 0.88075 1.02003 1.62007 1.16018 1.15026 1.33169 1.22179 0.86086 1.00851 0.97730 1.21441 0.94527 1.00101 0.97871 1.23230 0.97074 1.02976 1.02862 1.84616 1.09820 1.61520 1.34492 1.22649 0.93047 1.32995 1.17756 0.91046 1.25018 0.99418 0.94754 0.94650 1.70012 1.35532 1.29927 1.15065 0.86224 0.82586 0.78860 0.77854 1.19942 1.20828 1.19975 1.22041 0.94737 1.00143 0.90269 1.21619 0.95821 0.95059 1.01994 0.88182 0.90543 0.90738 0.90293 0.89935 0.90635 0.90947 0.90611 0.95038 0.89195 0.95057 0.90736 0.90715 0.91355 0.92375 0.92106 0.92272 0.95037 0.90696 0.91631 0.90815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 10.76 101.05 1.09 0.34 16 2 S -0.26 -2.34 21.25 -107.50 -2.28 -4.62 16 3 C -0.08 -0.59 5.39 37.16 0.20 -0.39 16 4 C -0.07 -0.64 2.25 -90.49 -0.20 -0.85 16 5 C -0.11 -1.15 5.17 -26.64 -0.14 -1.29 16 6 C 0.05 0.57 4.85 -3.83 -0.02 0.55 16 7 N -0.54 -6.68 4.81 -234.67 -1.13 -7.80 16 8 C 0.06 0.84 5.27 -3.83 -0.02 0.82 16 9 C -0.10 -1.68 4.47 -26.74 -0.12 -1.80 16 10 C -0.11 -2.30 5.67 37.16 0.21 -2.09 16 11 S -0.13 -3.52 21.44 -107.50 -2.30 -5.83 16 12 C -0.52 -14.99 9.50 30.94 0.29 -14.70 16 13 H 0.07 2.00 7.80 -52.49 -0.41 1.60 16 14 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 15 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 16 Si 0.92 21.75 29.55 -169.99 -5.02 16.72 16 17 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 C 0.06 0.58 5.42 -3.83 -0.02 0.55 16 21 C -0.11 -0.88 5.38 -26.66 -0.14 -1.03 16 22 H 0.10 0.52 8.14 -51.92 -0.42 0.10 16 23 H 0.08 0.41 8.14 -51.92 -0.42 -0.02 16 24 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 25 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 26 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.81 7.24 -51.93 -0.38 0.43 16 30 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 1.20 5.81 -51.93 -0.30 0.90 16 32 H 0.03 0.43 8.08 -51.93 -0.42 0.01 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.07 1.14 6.21 -51.93 -0.32 0.82 16 36 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 37 H 0.06 1.24 8.14 -51.91 -0.42 0.81 16 38 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 354.91 15.07 5.35 5.35 Total: -1.00 -30.97 354.91 -11.35 -42.32 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -7.73 Total: -2.68 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: 1.03 Total: -17.94 kcal Atomic # 7 Polarization: -32.93 SS G_CDS: -0.39 Total: -33.33 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -5.86 SS G_CDS: -4.59 Total: -10.45 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.97 -11.35 -42.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932591505.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.076 kcal (2) G-P(sol) polarization free energy of solvation -30.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds