Wall clock time and date at job start Tue Mar 31 2020 06:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81405 * 102.99706 * 2 1 4 4 C 1.53006 * 109.46817 * 180.02562 * 3 2 1 5 5 C 1.53125 * 109.51968 * 294.87466 * 4 3 2 6 6 C 1.53042 * 109.26930 * 182.50454 * 5 4 3 7 7 N 1.46847 * 109.57942 * 59.08505 * 6 5 4 8 8 C 1.46898 * 111.00278 * 174.18795 * 7 6 5 9 9 C 1.52994 * 109.47209 * 314.21067 * 8 7 6 10 10 C 1.52996 * 109.47173 * 179.97438 * 9 8 7 11 11 S 1.81002 * 109.47207 * 179.97438 * 10 9 8 12 12 C 1.76199 * 100.00044 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00441 * 0.02562 * 12 11 10 14 14 C 1.38804 * 120.00204 * 180.02562 * 12 11 10 15 15 N 1.31626 * 119.99881 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99978 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47356 * 60.00204 * 16 14 12 18 18 H 1.48505 * 109.47180 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47284 * 299.99864 * 16 14 12 20 20 C 1.46847 * 111.19491 * 298.28921 * 7 6 5 21 21 C 1.53036 * 109.52711 * 61.73715 * 20 7 6 22 22 H 1.09001 * 109.47190 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47089 * 299.99939 * 1 2 3 24 24 H 1.09004 * 109.47568 * 59.99949 * 1 2 3 25 25 H 1.09000 * 109.47133 * 299.99843 * 3 2 1 26 26 H 1.08998 * 109.47280 * 60.00592 * 3 2 1 27 27 H 1.09005 * 109.52161 * 54.99633 * 4 3 2 28 28 H 1.09005 * 109.50034 * 302.37940 * 5 4 3 29 29 H 1.08997 * 109.50351 * 62.50155 * 5 4 3 30 30 H 1.09002 * 109.41280 * 299.06468 * 6 5 4 31 31 H 1.09002 * 109.45295 * 179.12417 * 6 5 4 32 32 H 1.09000 * 109.47022 * 74.21076 * 8 7 6 33 33 H 1.09002 * 109.46859 * 194.20693 * 8 7 6 34 34 H 1.09000 * 109.47136 * 299.99939 * 9 8 7 35 35 H 1.09002 * 109.47515 * 60.00028 * 9 8 7 36 36 H 1.09000 * 109.47225 * 300.00111 * 10 9 8 37 37 H 1.09005 * 109.47244 * 60.00253 * 10 9 8 38 38 H 0.96997 * 120.00304 * 180.02562 * 15 14 12 39 39 H 1.09004 * 109.45954 * 301.72278 * 20 7 6 40 40 H 1.08998 * 109.45690 * 181.75255 * 20 7 6 41 41 H 1.09004 * 109.50332 * 180.87667 * 21 20 7 42 42 H 1.09003 * 109.49841 * 60.76544 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7423 1.9400 -0.0006 5 6 4.3197 1.3943 1.3084 6 6 5.8323 1.6262 1.3287 7 7 6.1116 3.0629 1.2095 8 6 7.5469 3.3348 1.3636 9 6 8.0873 2.5566 2.5648 10 6 9.5824 2.8393 2.7249 11 16 10.2216 1.9191 4.1465 12 6 11.9116 2.4149 4.0971 13 1 12.2524 3.0964 3.3317 14 6 12.8052 1.9297 5.0420 15 7 12.3901 1.0987 5.9746 16 14 14.5968 2.4559 4.9900 17 1 14.6840 3.9309 5.1382 18 1 15.3372 1.8019 6.0988 19 1 15.1937 2.0527 3.6914 20 6 5.6081 3.5979 -0.0620 21 6 4.0886 3.4264 -0.1233 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8030 2.2372 -0.8900 26 1 1.8031 2.2372 0.8900 27 1 4.1703 1.3956 -0.8424 28 1 3.8617 1.9116 2.1516 29 1 4.1132 0.3265 1.3800 30 1 6.2912 1.0965 0.4938 31 1 6.2442 1.2528 2.2662 32 1 8.0745 3.0237 0.4619 33 1 7.6993 4.4022 1.5237 34 1 7.5597 2.8676 3.4665 35 1 7.9349 1.4892 2.4047 36 1 10.1097 2.5279 1.8232 37 1 9.7353 3.9066 2.8850 38 1 13.0144 0.7598 6.6351 39 1 6.0681 3.0590 -0.8904 40 1 5.8573 4.6566 -0.1346 41 1 3.7171 3.8095 -1.0738 42 1 3.6270 3.9765 0.6968 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932591505.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:26 Heat of formation + Delta-G solvation = -43.589636 kcal Electronic energy + Delta-G solvation = -18318.654820 eV Core-core repulsion = 15549.116972 eV Total energy + Delta-G solvation = -2769.537848 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 289.123 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.28533 -36.66084 -34.61297 -33.63477 -31.78223 -29.98435 -29.20698 -27.81418 -26.01520 -24.50358 -23.20662 -21.66379 -20.64193 -19.55002 -17.28000 -17.11552 -16.89757 -16.55479 -16.06836 -15.81671 -15.59095 -15.22060 -15.18396 -14.67189 -14.51179 -14.33115 -14.11649 -13.66365 -13.47645 -13.28629 -13.14551 -13.03646 -12.90023 -12.62824 -12.42768 -12.32870 -12.12926 -11.82908 -11.74573 -11.44377 -11.34232 -11.14824 -11.08644 -10.75021 -10.31949 -9.25608 -8.67376 -8.64117 -8.37304 -6.13991 0.78243 1.30913 1.40773 1.47505 1.72776 1.73862 2.28239 2.93672 2.96609 3.32205 3.67166 3.74106 3.87493 3.99818 4.11431 4.24221 4.32073 4.34825 4.35673 4.39738 4.41871 4.48846 4.54962 4.60474 4.67077 4.72929 4.81342 4.85058 4.89406 4.92515 4.97462 5.06054 5.17343 5.21531 5.25047 5.27785 5.39058 5.46631 6.10345 6.17705 6.20761 7.04413 8.71918 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.037228 B = 0.002408 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.937974 B =11626.652861 C =12213.744214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.322 6.322 3 C -0.062 4.062 4 C -0.068 4.068 5 C -0.104 4.104 6 C 0.047 3.953 7 N -0.542 5.542 8 C 0.070 3.930 9 C -0.088 4.088 10 C -0.087 4.087 11 S -0.199 6.199 12 C -0.539 4.539 13 H 0.073 0.927 14 C 0.013 3.987 15 N -0.907 5.907 16 Si 0.995 3.005 17 H -0.264 1.264 18 H -0.275 1.275 19 H -0.265 1.265 20 C 0.053 3.947 21 C -0.098 4.098 22 H 0.105 0.895 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.026 0.974 31 H 0.072 0.928 32 H 0.034 0.966 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.272 0.728 39 H 0.031 0.969 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.070 3.725 -15.333 27.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.097 6.097 3 C -0.210 4.210 4 C -0.088 4.088 5 C -0.142 4.142 6 C -0.081 4.081 7 N -0.267 5.267 8 C -0.059 4.059 9 C -0.127 4.127 10 C -0.236 4.236 11 S 0.029 5.971 12 C -0.686 4.686 13 H 0.091 0.909 14 C -0.191 4.191 15 N -0.544 5.544 16 Si 0.817 3.183 17 H -0.188 1.188 18 H -0.199 1.199 19 H -0.189 1.189 20 C -0.075 4.075 21 C -0.138 4.138 22 H 0.124 0.876 23 H 0.103 0.897 24 H 0.105 0.895 25 H 0.114 0.886 26 H 0.106 0.894 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.044 0.956 31 H 0.090 0.910 32 H 0.052 0.948 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.049 0.951 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -23.161 2.267 -14.076 27.198 hybrid contribution 1.451 1.308 -1.132 2.258 sum -21.710 3.575 -15.209 26.747 Atomic orbital electron populations 1.23405 0.91588 1.07197 1.05735 1.87260 1.10379 1.13898 1.98149 1.23430 0.99236 0.92559 1.05786 1.20943 0.92405 0.97304 0.98113 1.21619 0.93739 1.01063 0.97783 1.22208 0.97011 0.88050 1.00792 1.62029 1.14803 1.14999 1.34892 1.22012 0.87161 1.00621 0.96118 1.21318 0.91830 1.00453 0.99097 1.23150 0.99071 1.01852 0.99541 1.84649 1.10135 1.63612 1.38661 1.23007 0.94055 1.33374 1.18215 0.90890 1.26101 1.04614 0.94485 0.93943 1.70150 1.37396 1.31003 1.15826 0.85051 0.76079 0.78836 0.78355 1.18843 1.19947 1.18938 1.22167 0.95948 1.00504 0.88857 1.21591 0.94391 0.94507 1.03284 0.87586 0.89741 0.89457 0.88635 0.89396 0.91402 0.91293 0.91266 0.95607 0.90998 0.94760 0.89925 0.91476 0.91759 0.92157 0.91729 0.91952 0.95120 0.89682 0.89323 0.90720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.76 113.37 1.22 0.10 16 2 S -0.32 -5.48 21.25 -56.49 -1.20 -6.68 16 3 C -0.06 -0.83 5.39 71.98 0.39 -0.44 16 4 C -0.07 -1.09 2.25 -10.71 -0.02 -1.12 16 5 C -0.10 -2.11 5.17 30.65 0.16 -1.96 16 6 C 0.05 1.14 4.85 86.33 0.42 1.56 16 7 N -0.54 -12.83 4.81 -896.36 -4.31 -17.14 16 8 C 0.07 1.86 5.27 86.30 0.46 2.31 16 9 C -0.09 -2.94 4.47 30.59 0.14 -2.80 16 10 C -0.09 -3.56 5.67 71.98 0.41 -3.15 16 11 S -0.20 -10.85 21.44 -56.49 -1.21 -12.06 16 12 C -0.54 -31.64 9.50 67.96 0.65 -30.99 16 13 H 0.07 4.11 7.80 -2.91 -0.02 4.09 16 14 C 0.01 0.78 5.49 84.86 0.47 1.24 16 15 N -0.91 -55.58 13.22 21.65 0.29 -55.30 16 16 Si 1.00 44.41 29.55 68.60 2.03 46.44 16 17 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 19 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 20 C 0.05 0.97 5.42 86.33 0.47 1.44 16 21 C -0.10 -1.39 5.38 30.64 0.16 -1.23 16 22 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 28 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.07 1.50 7.24 -2.39 -0.02 1.48 16 30 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 1.97 5.81 -2.39 -0.01 1.96 16 32 H 0.03 0.90 8.08 -2.39 -0.02 0.88 16 33 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.06 2.20 6.21 -2.39 -0.01 2.18 16 36 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 39 H 0.03 0.58 8.14 -2.38 -0.02 0.56 16 40 H 0.08 1.40 8.12 -2.39 -0.02 1.38 16 41 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -67.37 354.91 1.45 -65.92 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.95 Total: 13.85 kcal Atomic # 6 Polarization: -39.94 SS G_CDS: 4.90 Total: -35.03 kcal Atomic # 7 Polarization: -68.42 SS G_CDS: -4.02 Total: -72.44 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: -16.33 SS G_CDS: -2.41 Total: -18.74 kcal Total: -67.37 1.45 -65.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932591505.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.335 kcal (2) G-P(sol) polarization free energy of solvation -67.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds