Wall clock time and date at job start Tue Mar 31 2020 05:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46850 * 2 1 4 4 H 1.08993 * 109.46826 * 54.99986 * 3 2 1 5 5 C 1.50698 * 109.47009 * 175.00111 * 3 2 1 6 6 H 1.08000 * 120.00098 * 120.00294 * 5 3 2 7 7 C 1.37878 * 119.99829 * 299.99779 * 5 3 2 8 8 N 1.31520 * 120.00271 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99999 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46970 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47266 * 119.99850 * 9 7 5 12 12 H 1.48502 * 109.46742 * 240.00284 * 9 7 5 13 13 N 1.46497 * 109.47153 * 294.99874 * 3 2 1 14 14 C 1.34780 * 119.99952 * 84.99966 * 13 3 2 15 15 O 1.21580 * 119.99695 * 359.97438 * 14 13 3 16 16 N 1.34773 * 120.00035 * 180.02562 * 14 13 3 17 17 C 1.38364 * 119.99718 * 185.91509 * 16 14 13 18 18 C 1.36700 * 120.52080 * 17.48364 * 17 16 14 19 19 C 1.39610 * 119.37788 * 179.97438 * 18 17 16 20 20 N 1.31460 * 120.37534 * 359.97438 * 19 18 17 21 21 C 1.34047 * 120.98554 * 0.03094 * 20 19 18 22 22 C 1.38812 * 132.55658 * 179.97438 * 21 20 19 23 23 C 1.38766 * 107.64092 * 180.02562 * 22 21 20 24 24 N 1.31329 * 108.96858 * 0.02562 * 23 22 21 25 25 N 1.36942 * 120.51436 * 197.46768 * 17 16 14 26 26 H 1.08994 * 109.47152 * 60.00197 * 1 2 3 27 27 H 1.09004 * 109.46573 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47437 * 299.99365 * 1 2 3 29 29 H 1.09001 * 109.47287 * 239.99869 * 2 1 3 30 30 H 1.09004 * 109.47085 * 119.99809 * 2 1 3 31 31 H 0.97002 * 119.99735 * 180.02562 * 8 7 5 32 32 H 0.96994 * 120.00481 * 265.00057 * 13 3 2 33 33 H 0.96992 * 120.00164 * 5.90965 * 16 14 13 34 34 H 1.07999 * 120.31260 * 0.02562 * 18 17 16 35 35 H 1.08000 * 119.81678 * 180.02562 * 19 18 17 36 36 H 1.08003 * 126.17754 * 0.02562 * 22 21 20 37 37 H 1.08002 * 125.51449 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8891 -0.6523 7 6 4.1432 0.8786 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0049 0.8814 1.3818 10 1 6.5987 1.5464 0.1942 11 1 6.3990 1.6169 2.6102 12 1 6.4970 -0.5173 1.4630 13 7 1.6524 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3670 15 8 -0.3416 2.6317 -0.4321 16 7 0.0783 3.2665 -2.5187 17 6 -1.1200 3.9538 -2.5978 18 6 -1.7764 4.3375 -1.4618 19 6 -2.9837 5.0304 -1.5693 20 7 -3.4853 5.3123 -2.7512 21 6 -2.8542 4.9431 -3.8747 22 6 -3.1566 5.1090 -5.2193 23 6 -2.1388 4.5192 -5.9552 24 7 -1.2522 4.0136 -5.1287 25 7 -1.6666 4.2605 -3.8153 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8293 -0.0610 2.9499 32 1 2.2718 2.1233 -1.9978 33 1 0.6615 3.2181 -3.2922 34 1 -1.3646 4.1075 -0.4902 35 1 -3.5080 5.3373 -0.6764 36 1 -4.0270 5.6072 -5.6202 37 1 -2.0848 4.4813 -7.0332 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934986679.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:17 Heat of formation + Delta-G solvation = 101.221295 kcal Electronic energy + Delta-G solvation = -22657.922233 eV Core-core repulsion = 19245.219443 eV Total energy + Delta-G solvation = -3412.702790 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.38035 -40.29763 -37.87018 -36.21792 -34.98483 -32.99532 -32.17864 -31.04471 -30.54643 -28.83657 -27.14212 -24.59339 -23.53851 -23.17501 -21.90122 -20.59935 -19.87368 -19.09958 -18.27387 -17.18932 -16.74275 -16.36333 -15.98978 -15.63129 -15.01855 -14.84395 -14.30941 -14.18084 -13.66247 -13.37464 -12.97307 -12.81754 -12.71661 -12.50529 -11.88469 -11.58336 -11.40046 -11.33068 -11.05977 -10.95814 -10.47624 -10.35240 -10.16874 -9.87263 -9.71897 -9.53255 -9.25643 -9.18620 -8.66322 -8.15822 -7.62485 -6.26037 -4.36240 0.60844 0.99127 1.72388 2.57888 2.65730 3.15984 3.24704 3.26566 3.29416 3.62051 3.95618 4.18541 4.26298 4.43847 4.92469 5.05091 5.06763 5.26131 5.40644 5.73554 5.78405 5.92458 6.08437 6.26371 6.31331 6.39376 6.48124 6.52866 6.77149 6.92506 7.09202 7.12198 7.22223 7.38819 7.49717 7.63012 7.71286 7.74270 8.01212 8.40404 8.59366 8.83646 9.31248 10.79258 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.029732 B = 0.003683 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.515168 B = 7600.738431 C = 7930.664648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.130 4.130 3 C 0.285 3.715 4 H 0.055 0.945 5 C -0.538 4.538 6 H 0.063 0.937 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.903 3.097 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.703 5.703 14 C 0.697 3.303 15 O -0.557 6.557 16 N -0.672 5.672 17 C 0.456 3.544 18 C -0.268 4.268 19 C 0.207 3.793 20 N -0.503 5.503 21 C 0.290 3.710 22 C -0.286 4.286 23 C 0.093 3.907 24 N -0.331 5.331 25 N -0.333 5.333 26 H 0.035 0.965 27 H 0.024 0.976 28 H 0.052 0.948 29 H 0.032 0.968 30 H 0.103 0.897 31 H 0.266 0.734 32 H 0.391 0.609 33 H 0.417 0.583 34 H 0.203 0.797 35 H 0.181 0.819 36 H 0.160 0.840 37 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.385 6.870 -10.285 14.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.169 4.169 3 C 0.184 3.816 4 H 0.073 0.927 5 C -0.577 4.577 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.731 3.269 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.354 5.354 14 C 0.397 3.603 15 O -0.434 6.434 16 N -0.318 5.318 17 C 0.241 3.759 18 C -0.297 4.297 19 C 0.027 3.973 20 N -0.218 5.218 21 C 0.061 3.939 22 C -0.318 4.318 23 C -0.085 4.085 24 N -0.156 5.156 25 N -0.109 5.109 26 H 0.054 0.946 27 H 0.043 0.957 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.121 0.879 31 H 0.076 0.924 32 H 0.223 0.777 33 H 0.253 0.747 34 H 0.219 0.781 35 H 0.198 0.802 36 H 0.177 0.823 37 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -8.552 6.429 -9.443 14.270 hybrid contribution 1.572 -0.147 -0.779 1.761 sum -6.980 6.282 -10.222 13.881 Atomic orbital electron populations 1.21832 0.98216 0.98296 1.01112 1.21992 0.92709 0.99618 1.02615 1.18897 0.94463 0.89036 0.79251 0.92712 1.21210 0.90298 1.39577 1.06590 0.91886 1.24867 0.98815 0.94568 0.95252 1.69891 1.35213 1.37247 1.09310 0.86361 0.84478 0.77884 0.78206 1.19731 1.20765 1.20782 1.45978 1.12191 1.57397 1.19802 1.15918 0.84203 0.78821 0.81313 1.90798 1.51101 1.63570 1.37894 1.42701 1.18863 1.53574 1.16698 1.17410 0.86296 0.90015 0.82219 1.22566 0.99605 1.07808 0.99693 1.23292 0.90869 0.88016 0.95106 1.68265 1.32506 1.24342 0.96719 1.20788 0.83591 0.93979 0.95531 1.20865 1.05737 1.17317 0.87858 1.23743 0.91096 0.93613 1.00073 1.77722 1.24872 1.29487 0.83474 1.47266 1.18186 1.40199 1.05265 0.94644 0.95672 0.92874 0.94878 0.87894 0.92408 0.77661 0.74669 0.78107 0.80215 0.82255 0.78833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.51 37.16 0.32 -2.55 16 2 C -0.13 -2.95 5.45 -26.73 -0.15 -3.10 16 3 C 0.28 6.54 2.24 -69.08 -0.15 6.38 16 4 H 0.06 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.54 -13.23 8.73 -34.44 -0.30 -13.53 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.88 -23.23 11.29 55.43 0.63 -22.61 16 9 Si 0.90 19.63 29.54 -169.99 -5.02 14.61 16 10 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 13 N -0.70 -13.08 5.03 -59.82 -0.30 -13.38 16 14 C 0.70 12.43 6.98 -86.92 -0.61 11.83 16 15 O -0.56 -11.14 10.30 5.30 0.05 -11.08 16 16 N -0.67 -10.06 5.38 -15.60 -0.08 -10.14 16 17 C 0.46 7.02 7.61 -152.49 -1.16 5.86 16 18 C -0.27 -3.87 8.81 -39.63 -0.35 -4.22 16 19 C 0.21 2.58 11.25 -17.20 -0.19 2.38 16 20 N -0.50 -7.19 10.49 -12.34 -0.13 -7.32 16 21 C 0.29 4.32 7.92 -155.53 -1.23 3.09 16 22 C -0.29 -3.57 10.92 -39.17 -0.43 -4.00 16 23 C 0.09 1.07 11.94 -17.57 -0.21 0.86 16 24 N -0.33 -4.75 12.66 30.48 0.39 -4.36 16 25 N -0.33 -5.09 3.92 -11.51 -0.05 -5.14 16 26 H 0.03 0.72 5.64 -51.93 -0.29 0.43 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 1.16 7.84 -51.93 -0.41 0.76 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 31 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 32 H 0.39 6.28 8.56 -40.82 -0.35 5.93 16 33 H 0.42 5.42 8.84 -40.82 -0.36 5.06 16 34 H 0.20 3.12 5.27 -52.54 -0.28 2.84 16 35 H 0.18 1.51 8.06 -52.49 -0.42 1.08 16 36 H 0.16 1.60 8.06 -52.48 -0.42 1.18 16 37 H 0.19 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 311.77 15.07 4.70 4.70 Total: -1.00 -29.23 311.77 -8.42 -37.65 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -4.05 Total: 12.42 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: -4.56 Total: 4.66 kcal Atomic # 7 Polarization: -63.40 SS G_CDS: 0.45 Total: -62.95 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.05 Total: -11.08 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.23 -8.42 -37.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934986679.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.871 kcal (2) G-P(sol) polarization free energy of solvation -29.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds