Wall clock time and date at job start Tue Mar 31 2020 05:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46850 * 2 1 4 4 H 1.08993 * 109.46826 * 54.99986 * 3 2 1 5 5 C 1.50698 * 109.47009 * 175.00111 * 3 2 1 6 6 H 1.08000 * 120.00098 * 120.00294 * 5 3 2 7 7 C 1.37878 * 119.99829 * 299.99779 * 5 3 2 8 8 N 1.31520 * 120.00271 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99999 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46970 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47266 * 119.99850 * 9 7 5 12 12 H 1.48502 * 109.46742 * 240.00284 * 9 7 5 13 13 N 1.46497 * 109.47153 * 294.99874 * 3 2 1 14 14 C 1.34780 * 119.99952 * 84.99966 * 13 3 2 15 15 O 1.21580 * 119.99695 * 359.97438 * 14 13 3 16 16 N 1.34773 * 120.00035 * 180.02562 * 14 13 3 17 17 C 1.38364 * 119.99718 * 185.91509 * 16 14 13 18 18 C 1.36700 * 120.52080 * 17.48364 * 17 16 14 19 19 C 1.39610 * 119.37788 * 179.97438 * 18 17 16 20 20 N 1.31460 * 120.37534 * 359.97438 * 19 18 17 21 21 C 1.34047 * 120.98554 * 0.03094 * 20 19 18 22 22 C 1.38812 * 132.55658 * 179.97438 * 21 20 19 23 23 C 1.38766 * 107.64092 * 180.02562 * 22 21 20 24 24 N 1.31329 * 108.96858 * 0.02562 * 23 22 21 25 25 N 1.36942 * 120.51436 * 197.46768 * 17 16 14 26 26 H 1.08994 * 109.47152 * 60.00197 * 1 2 3 27 27 H 1.09004 * 109.46573 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47437 * 299.99365 * 1 2 3 29 29 H 1.09001 * 109.47287 * 239.99869 * 2 1 3 30 30 H 1.09004 * 109.47085 * 119.99809 * 2 1 3 31 31 H 0.97002 * 119.99735 * 180.02562 * 8 7 5 32 32 H 0.96994 * 120.00481 * 265.00057 * 13 3 2 33 33 H 0.96992 * 120.00164 * 5.90965 * 16 14 13 34 34 H 1.07999 * 120.31260 * 0.02562 * 18 17 16 35 35 H 1.08000 * 119.81678 * 180.02562 * 19 18 17 36 36 H 1.08003 * 126.17754 * 0.02562 * 22 21 20 37 37 H 1.08002 * 125.51449 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8891 -0.6523 7 6 4.1432 0.8786 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0049 0.8814 1.3818 10 1 6.5987 1.5464 0.1942 11 1 6.3990 1.6169 2.6102 12 1 6.4970 -0.5173 1.4630 13 7 1.6524 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3670 15 8 -0.3416 2.6317 -0.4321 16 7 0.0783 3.2665 -2.5187 17 6 -1.1200 3.9538 -2.5978 18 6 -1.7764 4.3375 -1.4618 19 6 -2.9837 5.0304 -1.5693 20 7 -3.4853 5.3123 -2.7512 21 6 -2.8542 4.9431 -3.8747 22 6 -3.1566 5.1090 -5.2193 23 6 -2.1388 4.5192 -5.9552 24 7 -1.2522 4.0136 -5.1287 25 7 -1.6666 4.2605 -3.8153 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8293 -0.0610 2.9499 32 1 2.2718 2.1233 -1.9978 33 1 0.6615 3.2181 -3.2922 34 1 -1.3646 4.1075 -0.4902 35 1 -3.5080 5.3373 -0.6764 36 1 -4.0270 5.6072 -5.6202 37 1 -2.0848 4.4813 -7.0332 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934986679.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:17 Heat of formation + Delta-G solvation = 82.643416 kcal Electronic energy + Delta-G solvation = -22658.727830 eV Core-core repulsion = 19245.219443 eV Total energy + Delta-G solvation = -3413.508387 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.43817 -41.66859 -38.98095 -37.64714 -36.47281 -34.58569 -33.62854 -32.52582 -31.73018 -29.91231 -28.92254 -25.85534 -24.86865 -24.57168 -23.17567 -21.84709 -21.53997 -20.42470 -19.59259 -18.38720 -18.05162 -17.68508 -17.35640 -17.06974 -16.57106 -16.22167 -15.73862 -15.30216 -14.98274 -14.60739 -14.47505 -14.30811 -13.85717 -13.61459 -13.54985 -13.20063 -12.99065 -12.86682 -12.70510 -12.37089 -12.16761 -12.09392 -11.61099 -11.44482 -11.07985 -10.95922 -10.72162 -10.56254 -10.39816 -9.79173 -8.70394 -8.17726 -6.34128 -0.46745 -0.06579 0.60109 1.41819 1.44784 1.49049 1.58003 1.60712 1.96299 2.40384 2.50503 2.95511 3.09627 3.14060 3.27502 3.88988 4.06201 4.25431 4.45792 4.49347 4.55409 4.63761 4.72026 4.79458 4.96381 4.98887 5.05085 5.23747 5.36085 5.40665 5.43684 5.55237 5.58742 5.68009 5.81850 5.99737 6.14499 6.39537 6.67137 6.71443 6.92066 7.28358 7.43289 8.87600 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.029732 B = 0.003683 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.515168 B = 7600.738431 C = 7930.664648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.124 4.124 3 C 0.295 3.705 4 H 0.015 0.985 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.021 3.979 8 N -0.910 5.910 9 Si 0.967 3.033 10 H -0.263 1.263 11 H -0.284 1.284 12 H -0.281 1.281 13 N -0.702 5.702 14 C 0.703 3.297 15 O -0.580 6.580 16 N -0.660 5.660 17 C 0.436 3.564 18 C -0.272 4.272 19 C 0.214 3.786 20 N -0.512 5.512 21 C 0.257 3.743 22 C -0.282 4.282 23 C 0.103 3.897 24 N -0.355 5.355 25 N -0.343 5.343 26 H 0.037 0.963 27 H 0.042 0.958 28 H 0.035 0.965 29 H 0.039 0.961 30 H 0.076 0.924 31 H 0.266 0.734 32 H 0.404 0.596 33 H 0.426 0.574 34 H 0.190 0.810 35 H 0.219 0.781 36 H 0.184 0.816 37 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.620 7.509 -12.221 16.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.163 4.163 3 C 0.193 3.807 4 H 0.033 0.967 5 C -0.587 4.587 6 H 0.090 0.910 7 C -0.180 4.180 8 N -0.548 5.548 9 Si 0.792 3.208 10 H -0.187 1.187 11 H -0.210 1.210 12 H -0.207 1.207 13 N -0.353 5.353 14 C 0.403 3.597 15 O -0.458 6.458 16 N -0.307 5.307 17 C 0.221 3.779 18 C -0.300 4.300 19 C 0.034 3.966 20 N -0.227 5.227 21 C 0.030 3.970 22 C -0.313 4.313 23 C -0.075 4.075 24 N -0.179 5.179 25 N -0.120 5.120 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.239 0.761 33 H 0.264 0.736 34 H 0.207 0.793 35 H 0.235 0.765 36 H 0.201 0.799 37 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -8.798 7.096 -11.442 16.084 hybrid contribution 1.531 -0.272 -0.268 1.578 sum -7.267 6.824 -11.710 15.379 Atomic orbital electron populations 1.21667 0.96889 0.99136 1.00329 1.21843 0.93780 0.99151 1.01513 1.18441 0.93668 0.88933 0.79701 0.96746 1.21549 0.91219 1.39178 1.06771 0.91047 1.25661 1.02909 0.94343 0.95053 1.70025 1.36865 1.38104 1.09819 0.85372 0.79520 0.77732 0.78150 1.18722 1.21009 1.20650 1.45569 1.13011 1.57698 1.19041 1.15824 0.83605 0.78550 0.81702 1.90798 1.51687 1.64287 1.39048 1.42310 1.19191 1.53243 1.15986 1.17547 0.86495 0.90834 0.82978 1.22556 1.00377 1.08143 0.98969 1.23837 0.90088 0.86776 0.95939 1.68329 1.32664 1.24585 0.97094 1.21362 0.84011 0.94934 0.96701 1.21346 1.06426 1.16474 0.87045 1.24516 0.89624 0.91616 1.01742 1.77700 1.26211 1.30518 0.83487 1.47327 1.18475 1.40847 1.05328 0.94395 0.93931 0.94577 0.94248 0.90532 0.92487 0.76088 0.73596 0.79348 0.76463 0.79921 0.74465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.16 8.51 71.98 0.61 -4.55 16 2 C -0.12 -5.68 5.45 30.60 0.17 -5.51 16 3 C 0.30 13.84 2.24 44.25 0.10 13.94 16 4 H 0.01 0.80 7.58 -2.39 -0.02 0.78 16 5 C -0.55 -27.06 8.73 25.60 0.22 -26.84 16 6 H 0.07 3.32 7.74 -2.91 -0.02 3.30 16 7 C 0.02 1.07 5.29 84.65 0.45 1.52 16 8 N -0.91 -49.07 11.29 21.45 0.24 -48.83 16 9 Si 0.97 40.14 29.54 68.60 2.03 42.17 16 10 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 11 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 12 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 13 N -0.70 -26.17 5.03 -461.42 -2.32 -28.49 16 14 C 0.70 25.26 6.98 179.05 1.25 26.51 16 15 O -0.58 -23.72 10.30 -3.97 -0.04 -23.76 16 16 N -0.66 -19.64 5.38 -321.53 -1.73 -21.37 16 17 C 0.44 13.31 7.61 131.29 1.00 14.31 16 18 C -0.27 -7.81 8.81 22.24 0.20 -7.62 16 19 C 0.21 5.08 11.25 85.08 0.96 6.04 16 20 N -0.51 -13.93 10.49 -192.94 -2.02 -15.95 16 21 C 0.26 7.31 7.92 133.12 1.05 8.36 16 22 C -0.28 -6.31 10.92 22.53 0.25 -6.06 16 23 C 0.10 2.06 11.94 84.89 1.01 3.07 16 24 N -0.35 -9.55 12.66 -57.48 -0.73 -10.28 16 25 N -0.34 -10.17 3.92 -190.33 -0.75 -10.92 16 26 H 0.04 1.55 5.64 -2.39 -0.01 1.53 16 27 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 28 H 0.04 1.61 7.84 -2.39 -0.02 1.59 16 29 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.08 3.96 5.95 -2.38 -0.01 3.95 16 31 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 32 H 0.40 12.77 8.56 -92.71 -0.79 11.98 16 33 H 0.43 10.85 8.84 -92.71 -0.82 10.03 16 34 H 0.19 5.97 5.27 -3.79 -0.02 5.95 16 35 H 0.22 3.20 8.06 -2.91 -0.02 3.18 16 36 H 0.18 3.08 8.06 -2.91 -0.02 3.06 16 37 H 0.24 2.28 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -63.62 311.77 1.47 -62.16 By element: Atomic # 1 Polarization: 32.56 SS G_CDS: -0.48 Total: 32.08 kcal Atomic # 6 Polarization: 15.91 SS G_CDS: 7.27 Total: 23.18 kcal Atomic # 7 Polarization: -128.52 SS G_CDS: -7.30 Total: -135.83 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.04 Total: -23.76 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -63.62 1.47 -62.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934986679.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.800 kcal (2) G-P(sol) polarization free energy of solvation -63.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds