Wall clock time and date at job start Tue Mar 31 2020 06:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47393 * 2 1 4 4 C 1.50697 * 109.46985 * 240.00399 * 2 1 3 5 5 H 1.08001 * 120.00084 * 239.99848 * 4 2 1 6 6 C 1.37881 * 120.00087 * 59.99555 * 4 2 1 7 7 N 1.31520 * 120.00003 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00195 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46910 * 60.00191 * 8 6 4 10 10 H 1.48503 * 109.47220 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47234 * 300.00231 * 8 6 4 12 12 N 1.46497 * 109.47320 * 120.00470 * 2 1 3 13 13 C 1.46492 * 120.00188 * 59.99806 * 12 2 1 14 14 C 1.34780 * 119.99952 * 239.99710 * 12 2 1 15 15 O 1.21580 * 119.99695 * 359.97438 * 14 12 2 16 16 N 1.34773 * 120.00035 * 180.02562 * 14 12 2 17 17 C 1.38363 * 119.99836 * 185.90082 * 16 14 12 18 18 C 1.36705 * 120.51896 * 17.49204 * 17 16 14 19 19 C 1.39609 * 119.37767 * 179.97438 * 18 17 16 20 20 N 1.31457 * 120.37661 * 359.97438 * 19 18 17 21 21 C 1.34045 * 120.98292 * 0.02562 * 20 19 18 22 22 C 1.38823 * 132.55515 * 179.97438 * 21 20 19 23 23 C 1.38772 * 107.63827 * 180.02562 * 22 21 20 24 24 N 1.31333 * 108.97147 * 0.02562 * 23 22 21 25 25 N 1.36932 * 120.51512 * 197.46869 * 17 16 14 26 26 H 1.09005 * 109.47025 * 299.99712 * 1 2 3 27 27 H 1.08998 * 109.47589 * 59.99568 * 1 2 3 28 28 H 1.08996 * 109.47393 * 179.97438 * 1 2 3 29 29 H 0.96997 * 119.99597 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.47415 * 269.99896 * 13 12 2 31 31 H 1.09004 * 109.47106 * 30.00081 * 13 12 2 32 32 H 1.09006 * 109.47253 * 150.00124 * 13 12 2 33 33 H 0.96990 * 120.00132 * 5.89607 * 16 14 12 34 34 H 1.07999 * 120.30961 * 0.02562 * 18 17 16 35 35 H 1.08006 * 119.81391 * 179.97438 * 19 18 17 36 36 H 1.07999 * 126.17713 * 0.02562 * 22 21 20 37 37 H 1.08006 * 125.51336 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9433 0.8304 -2.6034 8 14 2.3211 -1.1201 -4.0081 9 1 1.8255 -2.5200 -4.0079 10 1 1.8266 -0.4196 -5.2205 11 1 3.8061 -1.1207 -4.0084 12 7 2.0183 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7933 -0.0357 2.0833 15 8 3.0873 1.1281 1.8906 16 7 3.2430 -0.6713 3.1834 17 6 3.9350 0.0313 4.1539 18 6 3.8690 1.3959 4.2027 19 6 4.5764 2.0808 5.1925 20 7 5.2991 1.4210 6.0702 21 6 5.3742 0.0830 6.0361 22 6 6.0485 -0.8399 6.8239 23 6 5.7641 -2.1041 6.3274 24 7 4.9630 -1.9864 5.2933 25 7 4.6961 -0.6294 5.0808 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 0.7093 1.1619 -3.4844 30 1 0.7376 -2.1445 1.9992 31 1 1.5295 -2.5968 0.4706 32 1 2.4630 -2.5820 1.9862 33 1 3.0815 -1.6211 3.2947 34 1 3.2747 1.9390 3.4829 35 1 4.5297 3.1589 5.2373 36 1 6.6803 -0.6146 7.6704 37 1 6.1412 -3.0343 6.7262 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934990099.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:09 Heat of formation + Delta-G solvation = 115.941930 kcal Electronic energy + Delta-G solvation = -22741.078001 eV Core-core repulsion = 19329.013546 eV Total energy + Delta-G solvation = -3412.064455 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.37004 -40.34532 -37.87444 -36.22539 -35.31983 -33.24676 -32.15838 -30.78428 -29.45923 -28.72447 -26.51106 -25.36669 -24.55684 -23.52104 -22.26294 -20.80599 -19.78347 -18.78514 -17.68827 -17.17346 -16.72552 -16.23232 -16.19521 -15.62673 -15.11314 -14.77225 -14.27419 -14.15092 -13.49401 -13.39697 -13.08304 -12.86971 -12.70460 -12.51059 -11.91033 -11.80946 -11.69686 -11.28568 -11.16502 -10.96435 -10.84042 -10.44386 -10.28709 -10.11729 -9.84201 -9.49247 -9.37258 -9.23191 -8.55631 -7.97528 -7.58880 -6.20280 -4.29181 0.62153 1.00558 1.73814 2.59208 2.66737 3.20669 3.26260 3.26645 3.30262 3.62395 3.94777 4.04033 4.27819 4.30153 4.86729 5.02434 5.11778 5.27364 5.36701 5.41917 5.71112 5.76116 5.79004 5.91949 6.08699 6.13554 6.37865 6.47158 6.59115 6.66423 6.81624 6.91622 7.17475 7.38340 7.48892 7.58253 7.73003 7.86371 8.01102 8.26418 8.62203 8.78994 9.37672 10.85048 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.027213 B = 0.003893 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.656464 B = 7190.238072 C = 7524.528826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.271 3.729 3 H 0.069 0.931 4 C -0.533 4.533 5 H 0.060 0.940 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.277 1.277 12 N -0.589 5.589 13 C 0.077 3.923 14 C 0.700 3.300 15 O -0.560 6.560 16 N -0.670 5.670 17 C 0.456 3.544 18 C -0.269 4.269 19 C 0.208 3.792 20 N -0.503 5.503 21 C 0.290 3.710 22 C -0.286 4.286 23 C 0.094 3.906 24 N -0.332 5.332 25 N -0.333 5.333 26 H 0.013 0.987 27 H 0.097 0.903 28 H 0.031 0.969 29 H 0.266 0.734 30 H 0.051 0.949 31 H 0.092 0.908 32 H 0.048 0.952 33 H 0.417 0.583 34 H 0.202 0.798 35 H 0.181 0.819 36 H 0.160 0.840 37 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.639 -3.643 14.475 15.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.172 3.828 3 H 0.086 0.914 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.202 1.202 12 N -0.322 5.322 13 C -0.067 4.067 14 C 0.402 3.598 15 O -0.437 6.437 16 N -0.319 5.319 17 C 0.240 3.760 18 C -0.297 4.297 19 C 0.028 3.972 20 N -0.218 5.218 21 C 0.061 3.939 22 C -0.318 4.318 23 C -0.085 4.085 24 N -0.156 5.156 25 N -0.109 5.109 26 H 0.032 0.968 27 H 0.116 0.884 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.111 0.889 32 H 0.066 0.934 33 H 0.256 0.744 34 H 0.218 0.782 35 H 0.198 0.802 36 H 0.178 0.822 37 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 3.546 -3.203 13.852 14.653 hybrid contribution 0.290 -1.206 -0.814 1.483 sum 3.836 -4.408 13.039 14.288 Atomic orbital electron populations 1.22117 0.97689 0.99685 1.01119 1.19054 0.90990 0.94371 0.78399 0.91359 1.21244 1.32430 1.13372 0.90156 0.92199 1.24867 0.94750 0.94927 0.98968 1.69854 1.35909 1.22347 1.24162 0.86516 0.79284 0.79567 0.81812 1.20163 1.21032 1.20201 1.47763 1.49188 1.11877 1.23366 1.21683 0.98731 0.82939 1.03321 1.15794 0.80063 0.85101 0.78877 1.90774 1.61937 1.15069 1.75890 1.42818 1.55561 1.14058 1.19436 1.17427 0.86935 0.88777 0.82864 1.22551 1.10392 0.90100 1.06687 1.23289 0.86552 1.01123 0.86251 1.68264 1.23118 1.03385 1.27070 1.20797 0.94557 0.88512 0.89984 1.20864 1.13380 0.89598 1.07927 1.23746 0.93796 0.98939 0.92017 1.77722 1.25594 0.89520 1.22768 1.47261 1.32839 1.08091 1.22726 0.96773 0.88449 0.94980 0.92411 0.93089 0.88911 0.93372 0.74371 0.78202 0.80173 0.82239 0.78817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 8.97 37.16 0.33 -2.94 16 2 C 0.27 6.43 2.64 -69.09 -0.18 6.25 16 3 H 0.07 1.86 6.90 -51.93 -0.36 1.51 16 4 C -0.53 -13.61 7.99 -34.44 -0.28 -13.89 16 5 H 0.06 1.51 7.33 -52.49 -0.38 1.12 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -23.80 11.32 55.43 0.63 -23.18 16 8 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 9 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 N -0.59 -11.60 2.75 -181.02 -0.50 -12.10 16 13 C 0.08 1.19 9.25 59.84 0.55 1.74 16 14 C 0.70 13.57 8.13 -86.92 -0.71 12.86 16 15 O -0.56 -12.26 12.49 5.30 0.07 -12.20 16 16 N -0.67 -10.82 5.25 -15.60 -0.08 -10.91 16 17 C 0.46 7.36 7.61 -152.50 -1.16 6.20 16 18 C -0.27 -4.04 8.82 -39.62 -0.35 -4.39 16 19 C 0.21 2.66 11.25 -17.20 -0.19 2.46 16 20 N -0.50 -7.34 10.49 -12.33 -0.13 -7.47 16 21 C 0.29 4.42 7.92 -155.52 -1.23 3.19 16 22 C -0.29 -3.63 10.92 -39.17 -0.43 -4.06 16 23 C 0.09 1.09 11.94 -17.57 -0.21 0.88 16 24 N -0.33 -4.88 12.66 30.48 0.39 -4.50 16 25 N -0.33 -5.26 3.92 -11.51 -0.05 -5.31 16 26 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.10 2.39 6.07 -51.93 -0.32 2.08 16 28 H 0.03 0.65 7.67 -51.93 -0.40 0.26 16 29 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.09 1.52 7.02 -51.93 -0.36 1.15 16 32 H 0.05 0.62 6.28 -51.93 -0.33 0.29 16 33 H 0.42 5.95 6.51 -40.82 -0.27 5.69 16 34 H 0.20 3.24 5.27 -52.54 -0.28 2.96 16 35 H 0.18 1.55 8.06 -52.48 -0.42 1.13 16 36 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.20 1.39 8.06 -52.48 -0.42 0.96 16 LS Contribution 312.29 15.07 4.71 4.71 Total: -1.00 -30.41 312.29 -7.87 -38.28 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -3.94 Total: 7.44 kcal Atomic # 6 Polarization: 13.94 SS G_CDS: -3.94 Total: 9.99 kcal Atomic # 7 Polarization: -63.72 SS G_CDS: 0.26 Total: -63.46 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.07 Total: -12.20 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.41 -7.87 -38.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934990099.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.224 kcal (2) G-P(sol) polarization free energy of solvation -30.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds