Wall clock time and date at job start Tue Mar 31 2020 06:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47393 * 2 1 4 4 C 1.50697 * 109.46985 * 240.00399 * 2 1 3 5 5 H 1.08001 * 120.00084 * 239.99848 * 4 2 1 6 6 C 1.37881 * 120.00087 * 59.99555 * 4 2 1 7 7 N 1.31520 * 120.00003 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00195 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46910 * 60.00191 * 8 6 4 10 10 H 1.48503 * 109.47220 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47234 * 300.00231 * 8 6 4 12 12 N 1.46497 * 109.47320 * 120.00470 * 2 1 3 13 13 C 1.46492 * 120.00188 * 59.99806 * 12 2 1 14 14 C 1.34780 * 119.99952 * 239.99710 * 12 2 1 15 15 O 1.21580 * 119.99695 * 359.97438 * 14 12 2 16 16 N 1.34773 * 120.00035 * 180.02562 * 14 12 2 17 17 C 1.38363 * 119.99836 * 185.90082 * 16 14 12 18 18 C 1.36705 * 120.51896 * 17.49204 * 17 16 14 19 19 C 1.39609 * 119.37767 * 179.97438 * 18 17 16 20 20 N 1.31457 * 120.37661 * 359.97438 * 19 18 17 21 21 C 1.34045 * 120.98292 * 0.02562 * 20 19 18 22 22 C 1.38823 * 132.55515 * 179.97438 * 21 20 19 23 23 C 1.38772 * 107.63827 * 180.02562 * 22 21 20 24 24 N 1.31333 * 108.97147 * 0.02562 * 23 22 21 25 25 N 1.36932 * 120.51512 * 197.46869 * 17 16 14 26 26 H 1.09005 * 109.47025 * 299.99712 * 1 2 3 27 27 H 1.08998 * 109.47589 * 59.99568 * 1 2 3 28 28 H 1.08996 * 109.47393 * 179.97438 * 1 2 3 29 29 H 0.96997 * 119.99597 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.47415 * 269.99896 * 13 12 2 31 31 H 1.09004 * 109.47106 * 30.00081 * 13 12 2 32 32 H 1.09006 * 109.47253 * 150.00124 * 13 12 2 33 33 H 0.96990 * 120.00132 * 5.89607 * 16 14 12 34 34 H 1.07999 * 120.30961 * 0.02562 * 18 17 16 35 35 H 1.08006 * 119.81391 * 179.97438 * 19 18 17 36 36 H 1.07999 * 126.17713 * 0.02562 * 22 21 20 37 37 H 1.08006 * 125.51336 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9433 0.8304 -2.6034 8 14 2.3211 -1.1201 -4.0081 9 1 1.8255 -2.5200 -4.0079 10 1 1.8266 -0.4196 -5.2205 11 1 3.8061 -1.1207 -4.0084 12 7 2.0183 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7933 -0.0357 2.0833 15 8 3.0873 1.1281 1.8906 16 7 3.2430 -0.6713 3.1834 17 6 3.9350 0.0313 4.1539 18 6 3.8690 1.3959 4.2027 19 6 4.5764 2.0808 5.1925 20 7 5.2991 1.4210 6.0702 21 6 5.3742 0.0830 6.0361 22 6 6.0485 -0.8399 6.8239 23 6 5.7641 -2.1041 6.3274 24 7 4.9630 -1.9864 5.2933 25 7 4.6961 -0.6294 5.0808 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 0.7093 1.1619 -3.4844 30 1 0.7376 -2.1445 1.9992 31 1 1.5295 -2.5968 0.4706 32 1 2.4630 -2.5820 1.9862 33 1 3.0815 -1.6211 3.2947 34 1 3.2747 1.9390 3.4829 35 1 4.5297 3.1589 5.2373 36 1 6.6803 -0.6146 7.6704 37 1 6.1412 -3.0343 6.7262 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934990099.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:09 Heat of formation + Delta-G solvation = 97.694114 kcal Electronic energy + Delta-G solvation = -22741.869286 eV Core-core repulsion = 19329.013546 eV Total energy + Delta-G solvation = -3412.855740 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.46297 -41.75565 -39.00912 -37.68578 -36.77143 -34.97968 -33.47850 -31.92533 -31.09540 -29.84473 -27.87644 -27.31102 -25.77264 -24.60672 -23.63519 -22.11457 -21.18998 -20.11866 -19.03963 -18.45470 -18.24830 -17.64528 -17.36756 -17.13524 -16.61296 -16.26147 -15.68009 -15.17310 -15.02645 -14.57682 -14.45392 -14.24119 -13.89252 -13.57944 -13.57337 -13.21351 -13.12576 -12.91200 -12.76712 -12.67105 -12.34921 -12.21330 -12.12972 -11.45738 -11.23154 -11.01820 -10.75251 -10.53117 -10.43147 -9.54239 -8.71540 -8.16712 -6.32593 -0.49343 -0.08201 0.57324 1.38205 1.42603 1.45220 1.51669 1.58393 1.89727 2.38603 2.48536 2.65238 3.00673 3.12503 3.25933 3.79777 4.02949 4.17338 4.23494 4.44440 4.54340 4.61664 4.63997 4.80860 4.88808 4.90689 4.95274 4.99011 5.03157 5.28693 5.40349 5.49615 5.56505 5.59455 5.82889 6.02349 6.12916 6.37817 6.65010 6.69347 6.75453 7.17692 7.39606 8.87398 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.027213 B = 0.003893 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.656464 B = 7190.238072 C = 7524.528826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.278 3.722 3 H 0.023 0.977 4 C -0.544 4.544 5 H 0.060 0.940 6 C 0.022 3.978 7 N -0.912 5.912 8 Si 0.961 3.039 9 H -0.264 1.264 10 H -0.283 1.283 11 H -0.280 1.280 12 N -0.596 5.596 13 C 0.074 3.926 14 C 0.700 3.300 15 O -0.593 6.593 16 N -0.658 5.658 17 C 0.433 3.567 18 C -0.273 4.273 19 C 0.215 3.785 20 N -0.510 5.510 21 C 0.257 3.743 22 C -0.280 4.280 23 C 0.104 3.896 24 N -0.356 5.356 25 N -0.344 5.344 26 H 0.025 0.975 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.266 0.734 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.425 0.575 34 H 0.187 0.813 35 H 0.220 0.780 36 H 0.185 0.815 37 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.522 -5.313 15.913 17.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.177 3.823 3 H 0.041 0.959 4 C -0.583 4.583 5 H 0.078 0.922 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.786 3.214 9 H -0.188 1.188 10 H -0.209 1.209 11 H -0.206 1.206 12 N -0.329 5.329 13 C -0.068 4.068 14 C 0.402 3.598 15 O -0.472 6.472 16 N -0.307 5.307 17 C 0.219 3.781 18 C -0.301 4.301 19 C 0.035 3.965 20 N -0.225 5.225 21 C 0.030 3.970 22 C -0.311 4.311 23 C -0.074 4.074 24 N -0.180 5.180 25 N -0.120 5.120 26 H 0.044 0.956 27 H 0.090 0.910 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.266 0.734 34 H 0.204 0.796 35 H 0.237 0.763 36 H 0.202 0.798 37 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 4.439 -4.921 15.341 16.712 hybrid contribution 0.103 -0.694 -1.113 1.316 sum 4.541 -5.616 14.228 15.956 Atomic orbital electron populations 1.21902 0.96571 1.00356 1.00384 1.18630 0.91735 0.92341 0.79638 0.95891 1.21521 1.32303 1.13357 0.91077 0.92168 1.25623 0.94967 0.95571 1.01691 1.69986 1.36891 1.23528 1.24638 0.85571 0.78278 0.79051 0.78474 1.18831 1.20876 1.20594 1.47584 1.49425 1.13423 1.22474 1.21897 1.00875 0.80437 1.03625 1.15804 0.79851 0.84740 0.79425 1.90761 1.63012 1.16609 1.76826 1.42416 1.55452 1.14215 1.18631 1.17569 0.87840 0.89275 0.83422 1.22540 1.10546 0.90067 1.06987 1.23838 0.85133 1.02692 0.84867 1.68329 1.23356 1.03438 1.27387 1.21389 0.95647 0.89197 0.90802 1.21361 1.12471 0.89453 1.07821 1.24539 0.92017 1.00357 0.90470 1.77697 1.26791 0.89224 1.24265 1.47321 1.33312 1.08542 1.22852 0.95642 0.90981 0.93445 0.92482 0.90767 0.89771 0.90730 0.73392 0.79614 0.76318 0.79791 0.74327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.98 8.97 71.98 0.65 -5.33 16 2 C 0.28 13.49 2.64 44.24 0.12 13.60 16 3 H 0.02 1.32 6.90 -2.39 -0.02 1.31 16 4 C -0.54 -28.05 7.99 25.60 0.20 -27.85 16 5 H 0.06 3.03 7.33 -2.91 -0.02 3.01 16 6 C 0.02 1.15 5.30 84.65 0.45 1.60 16 7 N -0.91 -50.07 11.32 21.45 0.24 -49.83 16 8 Si 0.96 41.54 29.54 68.60 2.03 43.57 16 9 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 10 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 12 N -0.60 -23.58 2.75 -844.88 -2.33 -25.91 16 13 C 0.07 2.18 9.25 127.77 1.18 3.36 16 14 C 0.70 27.60 8.13 179.05 1.46 29.05 16 15 O -0.59 -27.03 12.49 -3.97 -0.05 -27.08 16 16 N -0.66 -21.15 5.25 -321.53 -1.69 -22.84 16 17 C 0.43 13.96 7.61 131.30 1.00 14.96 16 18 C -0.27 -8.27 8.82 22.24 0.20 -8.07 16 19 C 0.22 5.31 11.25 85.08 0.96 6.26 16 20 N -0.51 -14.21 10.49 -192.93 -2.02 -16.23 16 21 C 0.26 7.45 7.92 133.12 1.05 8.51 16 22 C -0.28 -6.34 10.92 22.54 0.25 -6.10 16 23 C 0.10 2.11 11.94 84.90 1.01 3.13 16 24 N -0.36 -9.78 12.66 -57.47 -0.73 -10.51 16 25 N -0.34 -10.54 3.92 -190.32 -0.75 -11.28 16 26 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 27 H 0.07 3.62 6.07 -2.39 -0.01 3.61 16 28 H 0.05 1.92 7.67 -2.39 -0.02 1.90 16 29 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.08 2.64 7.02 -2.39 -0.02 2.63 16 32 H 0.07 1.78 6.28 -2.38 -0.01 1.76 16 33 H 0.43 11.75 6.51 -92.72 -0.60 11.15 16 34 H 0.19 6.25 5.27 -3.80 -0.02 6.23 16 35 H 0.22 3.36 8.06 -2.91 -0.02 3.34 16 36 H 0.18 3.12 8.06 -2.91 -0.02 3.10 16 37 H 0.24 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -67.39 312.29 3.74 -63.65 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 0.51 Total: 23.35 kcal Atomic # 6 Polarization: 24.60 SS G_CDS: 8.52 Total: 33.12 kcal Atomic # 7 Polarization: -129.34 SS G_CDS: -7.27 Total: -136.60 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.05 Total: -27.08 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -67.39 3.74 -63.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934990099.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.346 kcal (2) G-P(sol) polarization free energy of solvation -67.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds