Wall clock time and date at job start Tue Mar 31 2020 06:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.47364 * 2 1 4 4 C 1.50696 * 109.47474 * 120.00687 * 2 1 3 5 5 H 1.07997 * 120.00742 * 119.99262 * 4 2 1 6 6 C 1.37879 * 119.99619 * 299.99754 * 4 2 1 7 7 N 1.31513 * 120.00022 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99834 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47402 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.46972 * 120.00357 * 8 6 4 11 11 H 1.48507 * 109.47169 * 239.99906 * 8 6 4 12 12 N 1.46500 * 109.46915 * 240.00115 * 2 1 3 13 13 C 1.46498 * 120.00665 * 300.00149 * 12 2 1 14 14 C 1.34779 * 120.00013 * 119.99988 * 12 2 1 15 15 O 1.21574 * 119.99888 * 359.97438 * 14 12 2 16 16 N 1.34777 * 120.00522 * 180.02562 * 14 12 2 17 17 C 1.38356 * 120.00353 * 185.89986 * 16 14 12 18 18 C 1.36708 * 120.51710 * 17.47932 * 17 16 14 19 19 C 1.39612 * 119.37667 * 180.02562 * 18 17 16 20 20 N 1.31454 * 120.37531 * 359.97299 * 19 18 17 21 21 C 1.34047 * 120.98273 * 0.03046 * 20 19 18 22 22 C 1.38825 * 132.54781 * 179.97438 * 21 20 19 23 23 C 1.38773 * 107.63309 * 180.02562 * 22 21 20 24 24 N 1.31334 * 108.97305 * 0.02562 * 23 22 21 25 25 N 1.36937 * 120.51646 * 197.50428 * 17 16 14 26 26 H 1.08994 * 109.47203 * 59.99469 * 1 2 3 27 27 H 1.09005 * 109.47200 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46900 * 299.99026 * 1 2 3 29 29 H 0.97003 * 119.99882 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.46987 * 270.00489 * 13 12 2 31 31 H 1.09007 * 109.46409 * 29.99697 * 13 12 2 32 32 H 1.08996 * 109.47620 * 149.99894 * 13 12 2 33 33 H 0.97004 * 119.99650 * 5.89502 * 16 14 12 34 34 H 1.08003 * 120.30629 * 0.04693 * 18 17 16 35 35 H 1.08000 * 119.80963 * 180.02562 * 19 18 17 36 36 H 1.07999 * 126.18469 * 359.97438 * 22 21 20 37 37 H 1.08001 * 125.51565 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4826 7 7 0.9428 0.8295 2.6034 8 14 2.3215 -1.1207 4.0078 9 1 3.1456 -2.2880 3.6036 10 1 3.1467 -0.1877 4.8164 11 1 1.1662 -1.5870 4.8160 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4282 14 6 2.7931 -0.0356 -2.0834 15 8 3.0864 1.1285 -1.8912 16 7 3.2420 -0.6707 -3.1842 17 6 4.1349 -0.0391 -4.0315 18 6 4.8398 1.0530 -3.6082 19 6 5.7343 1.6722 -4.4832 20 7 5.8985 1.2101 -5.7029 21 6 5.2150 0.1403 -6.1333 22 6 5.1982 -0.5378 -7.3445 23 6 4.2920 -1.5825 -7.2288 24 7 3.7708 -1.5641 -6.0235 25 7 4.3261 -0.4980 -5.3075 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 0.7089 1.1610 3.4845 30 1 2.4157 -2.7377 -0.9719 31 1 0.6903 -2.3001 -0.9848 32 1 1.6237 -2.2851 -2.5004 33 1 2.9389 -1.5706 -3.3823 34 1 4.7062 1.4330 -2.6061 35 1 6.2950 2.5352 -4.1559 36 1 5.7838 -0.2957 -8.2191 37 1 4.0533 -2.2948 -8.0047 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934990100.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:12 Heat of formation + Delta-G solvation = 116.606573 kcal Electronic energy + Delta-G solvation = -22742.646235 eV Core-core repulsion = 19330.610601 eV Total energy + Delta-G solvation = -3412.035634 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.37025 -40.34689 -37.87437 -36.23083 -35.32289 -33.24832 -32.16007 -30.78100 -29.45705 -28.72263 -26.54371 -25.36524 -24.55593 -23.51778 -22.26655 -20.79946 -19.78377 -18.76434 -17.69082 -17.16478 -16.64317 -16.48575 -16.06380 -15.62524 -15.07561 -14.77894 -14.29075 -14.15214 -13.50318 -13.36892 -13.11444 -12.86505 -12.79495 -12.50857 -11.95009 -11.73813 -11.70027 -11.30529 -11.16621 -10.94271 -10.85218 -10.39567 -10.30607 -10.11629 -9.83816 -9.52730 -9.33054 -9.21608 -8.56783 -7.97521 -7.58513 -6.20363 -4.29124 0.62327 1.00816 1.73655 2.58629 2.66997 3.18643 3.26278 3.28176 3.31087 3.62735 3.94874 4.03482 4.27953 4.30153 4.86549 5.02624 5.11669 5.27631 5.34450 5.42034 5.71562 5.78167 5.81069 5.92275 6.05505 6.10918 6.38121 6.47143 6.60137 6.65760 6.78872 6.91630 7.17983 7.37920 7.49313 7.57939 7.73323 7.86236 8.00249 8.26817 8.62535 8.79439 9.37969 10.85031 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.028939 B = 0.003864 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.303883 B = 7243.948817 C = 7581.841006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.271 3.729 3 H 0.069 0.931 4 C -0.530 4.530 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.901 3.099 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.283 1.283 12 N -0.589 5.589 13 C 0.080 3.920 14 C 0.700 3.300 15 O -0.560 6.560 16 N -0.670 5.670 17 C 0.455 3.545 18 C -0.268 4.268 19 C 0.208 3.792 20 N -0.503 5.503 21 C 0.290 3.710 22 C -0.287 4.287 23 C 0.093 3.907 24 N -0.333 5.333 25 N -0.333 5.333 26 H 0.013 0.987 27 H 0.032 0.968 28 H 0.098 0.902 29 H 0.265 0.735 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.046 0.954 33 H 0.417 0.583 34 H 0.202 0.798 35 H 0.182 0.818 36 H 0.160 0.840 37 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.993 -4.087 -13.702 15.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.171 3.829 3 H 0.087 0.913 4 C -0.569 4.569 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.728 3.272 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.209 1.209 12 N -0.322 5.322 13 C -0.063 4.063 14 C 0.402 3.598 15 O -0.437 6.437 16 N -0.319 5.319 17 C 0.239 3.761 18 C -0.296 4.296 19 C 0.028 3.972 20 N -0.219 5.219 21 C 0.062 3.938 22 C -0.318 4.318 23 C -0.085 4.085 24 N -0.157 5.157 25 N -0.109 5.109 26 H 0.032 0.968 27 H 0.051 0.949 28 H 0.116 0.884 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.256 0.744 34 H 0.219 0.781 35 H 0.198 0.802 36 H 0.178 0.822 37 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 4.665 -3.569 -13.231 14.476 hybrid contribution 0.033 -1.117 0.692 1.314 sum 4.698 -4.686 -12.539 14.187 Atomic orbital electron populations 1.22142 0.97843 0.99626 1.01205 1.19069 0.90957 0.94396 0.78450 0.91324 1.21309 1.32255 1.13256 0.90039 0.92084 1.24878 0.94799 0.94935 0.99006 1.69875 1.36050 1.22482 1.23931 0.86401 0.78637 0.79573 0.82552 1.19816 1.20787 1.20863 1.47760 1.49619 1.11811 1.23056 1.21637 1.02874 0.82980 0.98857 1.15787 0.80163 0.84834 0.79038 1.90772 1.61841 1.14891 1.76184 1.42812 1.45200 1.19965 1.23907 1.17422 0.89304 0.91267 0.78080 1.22578 1.01721 0.98359 1.06956 1.23295 0.91026 0.96014 0.86847 1.68267 1.24960 1.11206 1.17418 1.20798 0.89606 0.91459 0.91972 1.20863 1.11473 1.01983 0.97488 1.23739 0.93354 0.97146 0.94264 1.77711 1.24432 1.06688 1.06866 1.47256 1.31317 1.23537 1.08786 0.96777 0.94916 0.88363 0.92537 0.92500 0.89671 0.93515 0.74384 0.78118 0.80153 0.82247 0.78832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 8.95 37.16 0.33 -3.01 16 2 C 0.27 6.41 2.64 -69.09 -0.18 6.23 16 3 H 0.07 1.87 6.90 -51.93 -0.36 1.51 16 4 C -0.53 -13.43 8.37 -34.44 -0.29 -13.72 16 5 H 0.06 1.53 7.65 -52.49 -0.40 1.13 16 6 C 0.07 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -23.76 11.32 55.43 0.63 -23.14 16 8 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 9 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 N -0.59 -11.60 2.75 -181.02 -0.50 -12.10 16 13 C 0.08 1.24 9.50 59.85 0.57 1.81 16 14 C 0.70 13.55 8.13 -86.92 -0.71 12.84 16 15 O -0.56 -12.24 12.49 5.30 0.07 -12.17 16 16 N -0.67 -10.81 5.25 -15.60 -0.08 -10.89 16 17 C 0.45 7.36 7.61 -152.50 -1.16 6.20 16 18 C -0.27 -4.07 8.82 -39.62 -0.35 -4.42 16 19 C 0.21 2.69 11.25 -17.20 -0.19 2.50 16 20 N -0.50 -7.36 10.49 -12.33 -0.13 -7.49 16 21 C 0.29 4.42 7.92 -155.53 -1.23 3.19 16 22 C -0.29 -3.62 10.92 -39.17 -0.43 -4.05 16 23 C 0.09 1.08 11.94 -17.57 -0.21 0.87 16 24 N -0.33 -4.84 12.66 30.48 0.39 -4.46 16 25 N -0.33 -5.24 3.92 -11.51 -0.05 -5.28 16 26 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 28 H 0.10 2.43 6.07 -51.93 -0.32 2.12 16 29 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 1.31 6.43 -51.93 -0.33 0.98 16 32 H 0.05 0.58 6.28 -51.93 -0.33 0.25 16 33 H 0.42 5.92 6.51 -40.82 -0.27 5.66 16 34 H 0.20 3.34 5.27 -52.54 -0.28 3.06 16 35 H 0.18 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 37 H 0.19 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 311.61 15.07 4.70 4.70 Total: -1.00 -30.28 311.61 -7.81 -38.10 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -3.87 Total: 7.60 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: -3.94 Total: 10.06 kcal Atomic # 7 Polarization: -63.62 SS G_CDS: 0.26 Total: -63.36 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.07 Total: -12.17 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.28 -7.81 -38.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934990100.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.702 kcal (2) G-P(sol) polarization free energy of solvation -30.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds