Wall clock time and date at job start Tue Mar 31 2020 06:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.47364 * 2 1 4 4 C 1.50696 * 109.47474 * 120.00687 * 2 1 3 5 5 H 1.07997 * 120.00742 * 119.99262 * 4 2 1 6 6 C 1.37879 * 119.99619 * 299.99754 * 4 2 1 7 7 N 1.31513 * 120.00022 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99834 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47402 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.46972 * 120.00357 * 8 6 4 11 11 H 1.48507 * 109.47169 * 239.99906 * 8 6 4 12 12 N 1.46500 * 109.46915 * 240.00115 * 2 1 3 13 13 C 1.46498 * 120.00665 * 300.00149 * 12 2 1 14 14 C 1.34779 * 120.00013 * 119.99988 * 12 2 1 15 15 O 1.21574 * 119.99888 * 359.97438 * 14 12 2 16 16 N 1.34777 * 120.00522 * 180.02562 * 14 12 2 17 17 C 1.38356 * 120.00353 * 185.89986 * 16 14 12 18 18 C 1.36708 * 120.51710 * 17.47932 * 17 16 14 19 19 C 1.39612 * 119.37667 * 180.02562 * 18 17 16 20 20 N 1.31454 * 120.37531 * 359.97299 * 19 18 17 21 21 C 1.34047 * 120.98273 * 0.03046 * 20 19 18 22 22 C 1.38825 * 132.54781 * 179.97438 * 21 20 19 23 23 C 1.38773 * 107.63309 * 180.02562 * 22 21 20 24 24 N 1.31334 * 108.97305 * 0.02562 * 23 22 21 25 25 N 1.36937 * 120.51646 * 197.50428 * 17 16 14 26 26 H 1.08994 * 109.47203 * 59.99469 * 1 2 3 27 27 H 1.09005 * 109.47200 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46900 * 299.99026 * 1 2 3 29 29 H 0.97003 * 119.99882 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.46987 * 270.00489 * 13 12 2 31 31 H 1.09007 * 109.46409 * 29.99697 * 13 12 2 32 32 H 1.08996 * 109.47620 * 149.99894 * 13 12 2 33 33 H 0.97004 * 119.99650 * 5.89502 * 16 14 12 34 34 H 1.08003 * 120.30629 * 0.04693 * 18 17 16 35 35 H 1.08000 * 119.80963 * 180.02562 * 19 18 17 36 36 H 1.07999 * 126.18469 * 359.97438 * 22 21 20 37 37 H 1.08001 * 125.51565 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4826 7 7 0.9428 0.8295 2.6034 8 14 2.3215 -1.1207 4.0078 9 1 3.1456 -2.2880 3.6036 10 1 3.1467 -0.1877 4.8164 11 1 1.1662 -1.5870 4.8160 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4282 14 6 2.7931 -0.0356 -2.0834 15 8 3.0864 1.1285 -1.8912 16 7 3.2420 -0.6707 -3.1842 17 6 4.1349 -0.0391 -4.0315 18 6 4.8398 1.0530 -3.6082 19 6 5.7343 1.6722 -4.4832 20 7 5.8985 1.2101 -5.7029 21 6 5.2150 0.1403 -6.1333 22 6 5.1982 -0.5378 -7.3445 23 6 4.2920 -1.5825 -7.2288 24 7 3.7708 -1.5641 -6.0235 25 7 4.3261 -0.4980 -5.3075 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 0.7089 1.1610 3.4845 30 1 2.4157 -2.7377 -0.9719 31 1 0.6903 -2.3001 -0.9848 32 1 1.6237 -2.2851 -2.5004 33 1 2.9389 -1.5706 -3.3823 34 1 4.7062 1.4330 -2.6061 35 1 6.2950 2.5352 -4.1559 36 1 5.7838 -0.2957 -8.2191 37 1 4.0533 -2.2948 -8.0047 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934990100.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:12 Heat of formation + Delta-G solvation = 98.481780 kcal Electronic energy + Delta-G solvation = -22743.432185 eV Core-core repulsion = 19330.610601 eV Total energy + Delta-G solvation = -3412.821584 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.46424 -41.75896 -39.01177 -37.69394 -36.77559 -34.97863 -33.47949 -31.92470 -31.09613 -29.84456 -27.91464 -27.30449 -25.77630 -24.60641 -23.63875 -22.10363 -21.19263 -20.10275 -19.04449 -18.36970 -18.33713 -17.71594 -17.31076 -17.15911 -16.54875 -16.28752 -15.70530 -15.19379 -14.97155 -14.58624 -14.44099 -14.40705 -13.88996 -13.57927 -13.52061 -13.24426 -13.09565 -12.97283 -12.72948 -12.65282 -12.34521 -12.20715 -12.10267 -11.46833 -11.20098 -11.01618 -10.74187 -10.54529 -10.43217 -9.54688 -8.71432 -8.15958 -6.31826 -0.49725 -0.08350 0.56917 1.37565 1.42239 1.46135 1.55434 1.58859 1.89722 2.39572 2.48113 2.64610 3.00519 3.13444 3.25820 3.79418 4.02797 4.16590 4.23428 4.44336 4.50209 4.62472 4.63774 4.78530 4.86920 4.91284 4.94136 4.98995 5.02006 5.27344 5.37968 5.49784 5.57220 5.61051 5.83878 6.00671 6.12384 6.37874 6.64855 6.69701 6.76579 7.17558 7.40567 8.88616 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.028939 B = 0.003864 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.303883 B = 7243.948817 C = 7581.841006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.277 3.723 3 H 0.024 0.976 4 C -0.539 4.539 5 H 0.061 0.939 6 C 0.021 3.979 7 N -0.914 5.914 8 Si 0.963 3.037 9 H -0.267 1.267 10 H -0.285 1.285 11 H -0.277 1.277 12 N -0.597 5.597 13 C 0.077 3.923 14 C 0.700 3.300 15 O -0.593 6.593 16 N -0.658 5.658 17 C 0.434 3.566 18 C -0.274 4.274 19 C 0.215 3.785 20 N -0.510 5.510 21 C 0.257 3.743 22 C -0.280 4.280 23 C 0.105 3.895 24 N -0.355 5.355 25 N -0.344 5.344 26 H 0.021 0.979 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.265 0.735 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.425 0.575 34 H 0.185 0.815 35 H 0.220 0.780 36 H 0.185 0.815 37 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.647 -5.746 -15.322 17.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.176 3.824 3 H 0.041 0.959 4 C -0.577 4.577 5 H 0.079 0.921 6 C -0.180 4.180 7 N -0.553 5.553 8 Si 0.788 3.212 9 H -0.191 1.191 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.330 5.330 13 C -0.065 4.065 14 C 0.402 3.598 15 O -0.472 6.472 16 N -0.307 5.307 17 C 0.220 3.780 18 C -0.302 4.302 19 C 0.035 3.965 20 N -0.225 5.225 21 C 0.029 3.971 22 C -0.311 4.311 23 C -0.073 4.073 24 N -0.179 5.179 25 N -0.120 5.120 26 H 0.040 0.960 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.266 0.734 34 H 0.202 0.798 35 H 0.236 0.764 36 H 0.202 0.798 37 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 5.329 -5.274 -14.904 16.684 hybrid contribution -0.115 -0.602 1.028 1.197 sum 5.214 -5.877 -13.876 15.946 Atomic orbital electron populations 1.21942 0.96881 1.00399 1.00306 1.18644 0.91586 0.92410 0.79761 0.95855 1.21550 1.32106 1.13189 0.90865 0.92055 1.25641 0.95000 0.95565 1.01763 1.70004 1.37048 1.23710 1.24494 0.85436 0.78151 0.78479 0.79092 1.19140 1.21120 1.20211 1.47581 1.49863 1.13338 1.22170 1.21856 1.03028 0.80448 1.01201 1.15802 0.79929 0.84482 0.79593 1.90761 1.62884 1.16435 1.77097 1.42412 1.45170 1.20093 1.23035 1.17537 0.89813 0.91970 0.78702 1.22531 1.02443 0.98571 1.06676 1.23819 0.90307 0.96446 0.85942 1.68330 1.25063 1.11297 1.17801 1.21392 0.90337 0.92311 0.93019 1.21363 1.11131 1.01346 0.97241 1.24542 0.91735 0.97087 0.93972 1.77691 1.25313 1.06762 1.08130 1.47310 1.31947 1.24184 1.08543 0.95980 0.93191 0.90879 0.92530 0.91837 0.89510 0.90239 0.73368 0.79798 0.76407 0.79795 0.74280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.18 8.95 71.98 0.64 -5.54 16 2 C 0.28 13.46 2.64 44.24 0.12 13.58 16 3 H 0.02 1.35 6.90 -2.39 -0.02 1.33 16 4 C -0.54 -27.56 8.37 25.60 0.21 -27.34 16 5 H 0.06 3.07 7.65 -2.91 -0.02 3.04 16 6 C 0.02 1.07 5.30 84.66 0.45 1.52 16 7 N -0.91 -50.07 11.32 21.45 0.24 -49.83 16 8 Si 0.96 41.26 29.54 68.60 2.03 43.29 16 9 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 10 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 12 N -0.60 -23.61 2.75 -844.88 -2.33 -25.94 16 13 C 0.08 2.27 9.50 127.77 1.21 3.48 16 14 C 0.70 27.61 8.13 179.05 1.46 29.06 16 15 O -0.59 -27.03 12.49 -3.95 -0.05 -27.08 16 16 N -0.66 -21.13 5.25 -321.53 -1.69 -22.82 16 17 C 0.43 14.03 7.61 131.30 1.00 15.03 16 18 C -0.27 -8.44 8.82 22.24 0.20 -8.24 16 19 C 0.22 5.40 11.25 85.08 0.96 6.36 16 20 N -0.51 -14.27 10.49 -192.94 -2.02 -16.30 16 21 C 0.26 7.42 7.92 133.13 1.05 8.48 16 22 C -0.28 -6.28 10.92 22.54 0.25 -6.03 16 23 C 0.10 2.08 11.94 84.90 1.01 3.09 16 24 N -0.35 -9.60 12.66 -57.48 -0.73 -10.33 16 25 N -0.34 -10.46 3.92 -190.32 -0.75 -11.21 16 26 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.05 2.03 6.66 -2.38 -0.02 2.01 16 28 H 0.07 3.70 6.07 -2.39 -0.01 3.69 16 29 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 30 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.09 2.53 6.43 -2.38 -0.02 2.51 16 32 H 0.08 1.80 6.28 -2.39 -0.02 1.78 16 33 H 0.43 11.68 6.51 -92.71 -0.60 11.08 16 34 H 0.19 6.40 5.27 -3.81 -0.02 6.38 16 35 H 0.22 3.48 8.06 -2.91 -0.02 3.46 16 36 H 0.18 3.08 8.06 -2.91 -0.02 3.06 16 37 H 0.24 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -67.08 311.61 3.79 -63.30 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: 0.52 Total: 23.47 kcal Atomic # 6 Polarization: 24.89 SS G_CDS: 8.56 Total: 33.44 kcal Atomic # 7 Polarization: -129.15 SS G_CDS: -7.27 Total: -136.42 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.05 Total: -27.08 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Total: -67.08 3.79 -63.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934990100.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.780 kcal (2) G-P(sol) polarization free energy of solvation -67.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds