Wall clock time and date at job start Tue Mar 31 2020 06:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46492 * 109.47283 * 2 1 4 4 C 1.46504 * 120.00267 * 270.00157 * 3 2 1 5 5 C 1.50699 * 109.47331 * 270.00166 * 4 3 2 6 6 H 1.08008 * 119.99893 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00434 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00245 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99802 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.46876 * 89.99512 * 9 7 5 11 11 H 1.48494 * 109.47136 * 209.99652 * 9 7 5 12 12 H 1.48501 * 109.47132 * 329.99814 * 9 7 5 13 13 C 1.34773 * 120.00308 * 90.00613 * 3 2 1 14 14 O 1.21574 * 120.00543 * 179.97438 * 13 3 2 15 15 N 1.34780 * 119.99925 * 359.97438 * 13 3 2 16 16 C 1.38360 * 120.00201 * 183.77933 * 15 13 3 17 17 C 1.36701 * 120.51823 * 339.80780 * 16 15 13 18 18 C 1.39607 * 119.37617 * 179.97438 * 17 16 15 19 19 N 1.31453 * 120.37968 * 359.97438 * 18 17 16 20 20 C 1.34048 * 120.97835 * 0.02562 * 19 18 17 21 21 C 1.38829 * 132.54722 * 180.02562 * 20 19 18 22 22 C 1.38774 * 107.63242 * 179.97438 * 21 20 19 23 23 N 1.31331 * 108.97347 * 359.97438 * 22 21 20 24 24 N 1.36938 * 120.51562 * 159.79360 * 16 15 13 25 25 H 1.09000 * 109.47422 * 59.99644 * 1 2 3 26 26 H 1.08997 * 109.47563 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46707 * 299.99627 * 1 2 3 28 28 H 1.09003 * 109.46707 * 240.00373 * 2 1 3 29 29 H 1.09000 * 109.47422 * 120.00356 * 2 1 3 30 30 H 1.09003 * 109.46787 * 29.99809 * 4 3 2 31 31 H 1.09003 * 109.47568 * 150.00111 * 4 3 2 32 32 H 0.97003 * 119.99484 * 180.02562 * 8 7 5 33 33 H 0.97002 * 119.99590 * 3.77167 * 15 13 3 34 34 H 1.08000 * 120.30997 * 0.02562 * 17 16 15 35 35 H 1.08006 * 119.81177 * 180.02562 * 18 17 16 36 36 H 1.07991 * 126.18135 * 359.97438 * 21 20 19 37 37 H 1.08001 * 125.51143 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3427 1.2301 -1.0963 7 6 4.1491 2.3896 -2.8780 8 7 5.3913 2.1833 -3.2574 9 14 3.0128 3.4352 -3.9292 10 1 3.1164 4.8555 -3.5079 11 1 3.4057 3.3122 -5.3559 12 1 1.6131 2.9694 -3.7592 13 6 2.2431 2.0165 1.1671 14 8 2.6488 3.1625 1.1672 15 7 2.0181 1.3813 2.3344 16 6 2.1737 2.0577 3.5313 17 6 2.9266 3.1971 3.5920 18 6 3.0671 3.8608 4.8121 19 7 2.4811 3.3961 5.8931 20 6 1.7395 2.2803 5.8504 21 6 1.0276 1.5884 6.8210 22 6 0.4409 0.4899 6.2088 23 7 0.7612 0.4891 4.9352 24 7 1.5755 1.5964 4.6735 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.5817 1.6877 -2.0284 31 1 2.0956 3.1411 -1.1384 32 1 5.7173 2.5739 -4.0834 33 1 1.7470 0.4499 2.3353 34 1 3.4075 3.5805 2.7043 35 1 3.6600 4.7619 4.8681 36 1 0.9454 1.8567 7.8638 37 1 -0.1789 -0.2455 6.7003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934990258.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:40 Heat of formation + Delta-G solvation = 116.916520 kcal Electronic energy + Delta-G solvation = -22802.380445 eV Core-core repulsion = 19390.358251 eV Total energy + Delta-G solvation = -3412.022194 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.38397 -40.42845 -37.89745 -36.19578 -35.50462 -32.95730 -32.21549 -30.82440 -30.56448 -28.92902 -27.81016 -24.65363 -23.52114 -23.31180 -22.76689 -21.16787 -19.91750 -18.84633 -17.72914 -17.26667 -17.04182 -16.55138 -16.18934 -15.57406 -15.19946 -14.65394 -14.25822 -14.06658 -13.94820 -13.65333 -13.39504 -12.89681 -12.81407 -12.51700 -12.46986 -12.17710 -11.80553 -11.61931 -11.33528 -11.17402 -10.96418 -10.63939 -10.31314 -10.17770 -9.84913 -9.67862 -9.43946 -9.26487 -8.70279 -8.11509 -7.61655 -6.19899 -4.20615 0.60450 1.00169 1.71798 2.57476 2.62560 3.21272 3.25463 3.26923 3.29666 3.59806 3.83979 3.98430 4.27413 4.28982 4.82792 4.98759 5.03053 5.12493 5.26719 5.29617 5.40626 5.43273 5.70646 5.75794 5.82444 5.91762 5.94540 6.09152 6.21080 6.31670 6.43139 6.58547 6.67764 6.98720 7.09370 7.40274 7.44999 7.72062 8.01267 8.31693 8.64839 8.82564 9.38625 10.93085 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.024667 B = 0.004354 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.828243 B = 6429.254327 C = 7168.171515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.102 3.898 3 N -0.589 5.589 4 C 0.230 3.770 5 C -0.536 4.536 6 H 0.076 0.924 7 C 0.076 3.924 8 N -0.893 5.893 9 Si 0.875 3.125 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.707 3.293 14 O -0.550 6.550 15 N -0.670 5.670 16 C 0.450 3.550 17 C -0.266 4.266 18 C 0.207 3.793 19 N -0.502 5.502 20 C 0.289 3.711 21 C -0.286 4.286 22 C 0.093 3.907 23 N -0.332 5.332 24 N -0.332 5.332 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.037 0.963 31 H 0.041 0.959 32 H 0.266 0.734 33 H 0.417 0.583 34 H 0.208 0.792 35 H 0.182 0.818 36 H 0.160 0.840 37 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.661 -3.350 13.940 17.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.022 4.022 3 N -0.322 5.322 4 C 0.110 3.890 5 C -0.574 4.574 6 H 0.094 0.906 7 C -0.127 4.127 8 N -0.531 5.531 9 Si 0.702 3.298 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.408 3.592 14 O -0.425 6.425 15 N -0.318 5.318 16 C 0.235 3.765 17 C -0.294 4.294 18 C 0.027 3.973 19 N -0.217 5.217 20 C 0.061 3.939 21 C -0.317 4.317 22 C -0.086 4.086 23 N -0.156 5.156 24 N -0.108 5.108 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.115 0.885 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.256 0.744 34 H 0.224 0.776 35 H 0.199 0.801 36 H 0.177 0.823 37 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -9.479 -2.927 13.389 16.664 hybrid contribution -0.611 -0.110 -0.612 0.872 sum -10.090 -3.037 12.777 16.562 Atomic orbital electron populations 1.22251 0.96079 1.02152 1.02555 1.21525 0.93928 0.83379 1.03351 1.47342 1.66016 1.13672 1.05203 1.19739 0.97739 0.93306 0.78250 1.21285 0.95158 1.33529 1.07476 0.90622 1.24827 0.94999 0.95681 0.97234 1.69888 1.15083 1.44584 1.23539 0.86869 0.81336 0.81655 0.79928 1.19740 1.20956 1.19069 1.15652 0.79385 0.84588 0.79545 1.90742 1.50750 1.16469 1.84546 1.42699 1.70393 1.15797 1.02955 1.17418 0.90009 0.91174 0.77899 1.22812 1.05843 0.96760 1.04026 1.23335 0.90806 0.96943 0.86233 1.68267 1.12136 1.10721 1.30550 1.20798 0.97266 0.90568 0.85306 1.20866 1.10730 1.00171 0.99978 1.23736 0.96958 0.97223 0.90643 1.77712 1.15186 1.04715 1.18026 1.47280 1.34778 1.21043 1.07706 0.91707 0.91440 0.93020 0.88521 0.92047 0.94532 0.94073 0.92379 0.74397 0.77587 0.80112 0.82256 0.78846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 10.24 37.16 0.38 -1.68 16 2 C 0.10 1.46 5.92 -4.05 -0.02 1.44 16 3 N -0.59 -11.12 2.46 -180.81 -0.44 -11.56 16 4 C 0.23 5.16 4.23 -5.19 -0.02 5.14 16 5 C -0.54 -14.41 9.94 -34.44 -0.34 -14.75 16 6 H 0.08 2.25 8.06 -52.48 -0.42 1.82 16 7 C 0.08 2.09 5.47 -17.82 -0.10 2.00 16 8 N -0.89 -26.37 13.96 55.43 0.77 -25.60 16 9 Si 0.88 20.39 27.47 -169.99 -4.67 15.72 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.27 -5.79 6.54 56.52 0.37 -5.42 16 13 C 0.71 13.47 8.18 -86.92 -0.71 12.76 16 14 O -0.55 -11.95 12.63 5.30 0.07 -11.89 16 15 N -0.67 -10.65 5.25 -15.60 -0.08 -10.74 16 16 C 0.45 7.23 7.60 -152.50 -1.16 6.07 16 17 C -0.27 -4.07 8.88 -39.63 -0.35 -4.43 16 18 C 0.21 2.69 11.25 -17.20 -0.19 2.50 16 19 N -0.50 -7.33 10.49 -12.33 -0.13 -7.46 16 20 C 0.29 4.37 7.92 -155.53 -1.23 3.14 16 21 C -0.29 -3.58 10.92 -39.16 -0.43 -4.01 16 22 C 0.09 1.06 11.94 -17.57 -0.21 0.85 16 23 N -0.33 -4.75 12.66 30.48 0.39 -4.36 16 24 N -0.33 -5.16 3.92 -11.51 -0.05 -5.21 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.10 1.42 8.07 -51.93 -0.42 1.00 16 29 H 0.06 0.76 6.31 -51.93 -0.33 0.43 16 30 H 0.04 0.78 7.13 -51.93 -0.37 0.41 16 31 H 0.04 0.98 6.85 -51.93 -0.36 0.63 16 32 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.42 5.83 6.52 -40.82 -0.27 5.57 16 34 H 0.21 3.49 5.14 -52.95 -0.27 3.22 16 35 H 0.18 1.62 8.06 -52.48 -0.42 1.20 16 36 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 37 H 0.19 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 317.05 15.07 4.78 4.78 Total: -1.00 -32.73 317.05 -7.89 -40.62 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -4.14 Total: 6.67 kcal Atomic # 6 Polarization: 13.41 SS G_CDS: -4.39 Total: 9.02 kcal Atomic # 7 Polarization: -65.39 SS G_CDS: 0.46 Total: -64.93 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.07 Total: -11.89 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.67 Total: 15.72 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.73 -7.89 -40.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934990258.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.540 kcal (2) G-P(sol) polarization free energy of solvation -32.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds