Wall clock time and date at job start Tue Mar 31 2020 06:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46492 * 109.47283 * 2 1 4 4 C 1.46504 * 120.00267 * 270.00157 * 3 2 1 5 5 C 1.50699 * 109.47331 * 270.00166 * 4 3 2 6 6 H 1.08008 * 119.99893 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00434 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00245 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99802 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.46876 * 89.99512 * 9 7 5 11 11 H 1.48494 * 109.47136 * 209.99652 * 9 7 5 12 12 H 1.48501 * 109.47132 * 329.99814 * 9 7 5 13 13 C 1.34773 * 120.00308 * 90.00613 * 3 2 1 14 14 O 1.21574 * 120.00543 * 179.97438 * 13 3 2 15 15 N 1.34780 * 119.99925 * 359.97438 * 13 3 2 16 16 C 1.38360 * 120.00201 * 183.77933 * 15 13 3 17 17 C 1.36701 * 120.51823 * 339.80780 * 16 15 13 18 18 C 1.39607 * 119.37617 * 179.97438 * 17 16 15 19 19 N 1.31453 * 120.37968 * 359.97438 * 18 17 16 20 20 C 1.34048 * 120.97835 * 0.02562 * 19 18 17 21 21 C 1.38829 * 132.54722 * 180.02562 * 20 19 18 22 22 C 1.38774 * 107.63242 * 179.97438 * 21 20 19 23 23 N 1.31331 * 108.97347 * 359.97438 * 22 21 20 24 24 N 1.36938 * 120.51562 * 159.79360 * 16 15 13 25 25 H 1.09000 * 109.47422 * 59.99644 * 1 2 3 26 26 H 1.08997 * 109.47563 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46707 * 299.99627 * 1 2 3 28 28 H 1.09003 * 109.46707 * 240.00373 * 2 1 3 29 29 H 1.09000 * 109.47422 * 120.00356 * 2 1 3 30 30 H 1.09003 * 109.46787 * 29.99809 * 4 3 2 31 31 H 1.09003 * 109.47568 * 150.00111 * 4 3 2 32 32 H 0.97003 * 119.99484 * 180.02562 * 8 7 5 33 33 H 0.97002 * 119.99590 * 3.77167 * 15 13 3 34 34 H 1.08000 * 120.30997 * 0.02562 * 17 16 15 35 35 H 1.08006 * 119.81177 * 180.02562 * 18 17 16 36 36 H 1.07991 * 126.18135 * 359.97438 * 21 20 19 37 37 H 1.08001 * 125.51143 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3427 1.2301 -1.0963 7 6 4.1491 2.3896 -2.8780 8 7 5.3913 2.1833 -3.2574 9 14 3.0128 3.4352 -3.9292 10 1 3.1164 4.8555 -3.5079 11 1 3.4057 3.3122 -5.3559 12 1 1.6131 2.9694 -3.7592 13 6 2.2431 2.0165 1.1671 14 8 2.6488 3.1625 1.1672 15 7 2.0181 1.3813 2.3344 16 6 2.1737 2.0577 3.5313 17 6 2.9266 3.1971 3.5920 18 6 3.0671 3.8608 4.8121 19 7 2.4811 3.3961 5.8931 20 6 1.7395 2.2803 5.8504 21 6 1.0276 1.5884 6.8210 22 6 0.4409 0.4899 6.2088 23 7 0.7612 0.4891 4.9352 24 7 1.5755 1.5964 4.6735 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.5817 1.6877 -2.0284 31 1 2.0956 3.1411 -1.1384 32 1 5.7173 2.5739 -4.0834 33 1 1.7470 0.4499 2.3353 34 1 3.4075 3.5805 2.7043 35 1 3.6600 4.7619 4.8681 36 1 0.9454 1.8567 7.8638 37 1 -0.1789 -0.2455 6.7003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934990258.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:39 Heat of formation + Delta-G solvation = 95.920794 kcal Electronic energy + Delta-G solvation = -22803.290888 eV Core-core repulsion = 19390.358251 eV Total energy + Delta-G solvation = -3412.932637 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.47308 -41.80441 -39.00839 -37.54623 -36.89063 -34.87836 -33.49309 -31.99129 -31.86667 -30.09336 -29.42786 -25.95783 -24.62764 -24.56929 -24.27453 -22.35568 -21.24199 -20.11208 -19.17218 -18.96424 -18.36365 -17.72478 -17.35697 -16.99244 -16.58885 -16.26944 -15.52880 -15.46497 -15.09750 -14.85298 -14.55083 -14.41538 -14.03380 -13.88995 -13.60745 -13.55545 -13.26974 -13.00480 -12.70599 -12.47106 -12.39831 -12.12417 -12.03756 -11.74245 -11.42800 -11.02009 -10.81645 -10.69683 -10.47134 -9.65389 -8.72862 -8.32526 -6.38687 -0.51367 -0.08790 0.55509 1.33510 1.39088 1.40499 1.48203 1.58703 1.88326 2.32437 2.46058 2.52805 2.99287 3.02672 3.25397 3.76320 3.90529 4.03028 4.21573 4.22828 4.36056 4.45010 4.61097 4.62548 4.78763 4.83126 4.85566 4.91114 4.94986 4.99669 5.24961 5.31002 5.42536 5.51280 5.55721 5.69411 6.21877 6.36384 6.60975 6.63149 6.65108 7.13554 7.28023 8.84097 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.024667 B = 0.004354 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.828243 B = 6429.254327 C = 7168.171515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.095 3.905 3 N -0.596 5.596 4 C 0.240 3.760 5 C -0.538 4.538 6 H 0.031 0.969 7 C 0.016 3.984 8 N -0.944 5.944 9 Si 0.945 3.055 10 H -0.274 1.274 11 H -0.279 1.279 12 H -0.236 1.236 13 C 0.705 3.295 14 O -0.584 6.584 15 N -0.658 5.658 16 C 0.431 3.569 17 C -0.274 4.274 18 C 0.214 3.786 19 N -0.509 5.509 20 C 0.255 3.745 21 C -0.279 4.279 22 C 0.105 3.895 23 N -0.352 5.352 24 N -0.343 5.343 25 H 0.058 0.942 26 H 0.097 0.903 27 H 0.047 0.953 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.030 0.970 32 H 0.268 0.732 33 H 0.425 0.575 34 H 0.189 0.811 35 H 0.219 0.781 36 H 0.185 0.815 37 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.200 -3.860 15.200 19.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.027 4.027 3 N -0.329 5.329 4 C 0.118 3.882 5 C -0.577 4.577 6 H 0.049 0.951 7 C -0.183 4.183 8 N -0.584 5.584 9 Si 0.768 3.232 10 H -0.199 1.199 11 H -0.205 1.205 12 H -0.159 1.159 13 C 0.406 3.594 14 O -0.462 6.462 15 N -0.307 5.307 16 C 0.217 3.783 17 C -0.302 4.302 18 C 0.033 3.967 19 N -0.223 5.223 20 C 0.028 3.972 21 C -0.310 4.310 22 C -0.074 4.074 23 N -0.176 5.176 24 N -0.119 5.119 25 H 0.077 0.923 26 H 0.116 0.884 27 H 0.066 0.934 28 H 0.110 0.890 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.266 0.734 34 H 0.206 0.794 35 H 0.235 0.765 36 H 0.202 0.798 37 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -12.056 -3.494 14.703 19.332 hybrid contribution 0.212 -0.044 -0.807 0.835 sum -11.845 -3.538 13.896 18.599 Atomic orbital electron populations 1.22164 0.93696 1.03984 1.02059 1.21814 0.95792 0.80987 1.04116 1.47306 1.66224 1.15248 1.04123 1.19409 0.95211 0.93231 0.80314 1.21512 0.96904 1.32399 1.06872 0.95100 1.25781 0.96584 0.97075 0.98828 1.70046 1.17449 1.46400 1.24456 0.85763 0.80538 0.79211 0.77732 1.19948 1.20454 1.15887 1.15745 0.79034 0.84317 0.80281 1.90730 1.52132 1.18058 1.85302 1.42335 1.70207 1.15948 1.02200 1.17522 0.90888 0.91744 0.78163 1.22726 1.06029 0.97145 1.04346 1.23829 0.90401 0.97529 0.84935 1.68326 1.12338 1.10854 1.30816 1.21391 0.98506 0.91355 0.85945 1.21366 1.09249 0.99680 1.00698 1.24544 0.95998 0.97321 0.89502 1.77695 1.15488 1.04656 1.19808 1.47327 1.35503 1.21684 1.07367 0.92267 0.88387 0.93383 0.88957 0.90173 0.92326 0.95232 0.92249 0.73426 0.79444 0.76501 0.79822 0.74255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 10.24 71.98 0.74 -2.76 16 2 C 0.10 2.63 5.92 86.38 0.51 3.14 16 3 N -0.60 -22.57 2.46 -844.21 -2.07 -24.65 16 4 C 0.24 10.78 4.23 85.63 0.36 11.14 16 5 C -0.54 -29.81 9.94 25.60 0.25 -29.55 16 6 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16 7 C 0.02 0.89 5.47 84.65 0.46 1.35 16 8 N -0.94 -57.55 13.96 21.45 0.30 -57.25 16 9 Si 0.94 41.97 27.47 68.60 1.88 43.85 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 12 H -0.24 -9.25 6.54 99.48 0.65 -8.60 16 13 C 0.70 27.41 8.18 179.05 1.46 28.87 16 14 O -0.58 -26.35 12.63 -3.95 -0.05 -26.40 16 15 N -0.66 -21.07 5.25 -321.53 -1.69 -22.76 16 16 C 0.43 13.94 7.60 131.30 1.00 14.94 16 17 C -0.27 -8.58 8.88 22.24 0.20 -8.38 16 18 C 0.21 5.45 11.25 85.08 0.96 6.41 16 19 N -0.51 -14.32 10.49 -192.94 -2.02 -16.34 16 20 C 0.26 7.37 7.92 133.13 1.05 8.42 16 21 C -0.28 -6.21 10.92 22.54 0.25 -5.96 16 22 C 0.10 2.04 11.94 84.90 1.01 3.05 16 23 N -0.35 -9.37 12.66 -57.48 -0.73 -10.10 16 24 N -0.34 -10.36 3.92 -190.32 -0.75 -11.11 16 25 H 0.06 1.36 8.14 -2.39 -0.02 1.35 16 26 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.09 2.64 8.07 -2.39 -0.02 2.62 16 29 H 0.08 1.89 6.31 -2.39 -0.02 1.88 16 30 H 0.06 2.39 7.13 -2.39 -0.02 2.37 16 31 H 0.03 1.41 6.85 -2.39 -0.02 1.39 16 32 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 33 H 0.43 11.71 6.52 -92.71 -0.60 11.10 16 34 H 0.19 6.70 5.14 -10.24 -0.05 6.64 16 35 H 0.22 3.61 8.06 -2.91 -0.02 3.58 16 36 H 0.18 3.06 8.06 -2.92 -0.02 3.03 16 37 H 0.24 2.11 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -74.08 317.05 3.55 -70.53 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: 0.42 Total: 23.53 kcal Atomic # 6 Polarization: 22.42 SS G_CDS: 8.26 Total: 30.68 kcal Atomic # 7 Polarization: -135.24 SS G_CDS: -6.96 Total: -142.20 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.05 Total: -26.40 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 1.88 Total: 43.85 kcal Total: -74.08 3.55 -70.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934990258.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.453 kcal (2) G-P(sol) polarization free energy of solvation -74.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds