Wall clock time and date at job start Tue Mar 31 2020 05:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30369 * 125.91193 * 2 1 4 4 N 1.39904 * 109.15434 * 180.26036 * 3 2 1 5 5 C 1.46505 * 125.75817 * 179.71040 * 4 3 2 6 6 C 1.34770 * 108.48464 * 359.71881 * 4 3 2 7 7 N 1.39029 * 126.42143 * 180.02562 * 6 4 3 8 8 C 1.35952 * 126.10111 * 334.96820 * 7 6 4 9 9 C 1.35267 * 107.59679 * 179.97438 * 8 7 6 10 10 C 1.39998 * 107.97646 * 0.02562 * 9 8 7 11 11 N 1.30823 * 108.37629 * 359.75655 * 10 9 8 12 12 C 1.39068 * 107.16593 * 359.97438 * 6 4 3 13 13 C 1.46986 * 126.49319 * 180.02562 * 12 6 4 14 14 O 1.21681 * 119.99902 * 89.99423 * 13 12 6 15 15 N 1.34770 * 119.99792 * 270.00043 * 13 12 6 16 16 C 1.46498 * 120.00082 * 359.97438 * 15 13 12 17 17 C 1.36988 * 119.99981 * 179.72109 * 15 13 12 18 18 H 1.07995 * 119.99823 * 331.26221 * 17 15 13 19 19 C 1.38966 * 119.99819 * 151.26151 * 17 15 13 20 20 N 1.31424 * 120.00118 * 350.35287 * 19 17 15 21 21 Si 1.86803 * 119.99731 * 170.35562 * 19 17 15 22 22 H 1.48493 * 109.47206 * 60.00007 * 21 19 17 23 23 H 1.48498 * 109.46841 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47106 * 299.99714 * 21 19 17 25 25 H 1.08992 * 109.47017 * 270.21136 * 1 2 3 26 26 H 1.08999 * 109.47308 * 30.21333 * 1 2 3 27 27 H 1.09005 * 109.46976 * 150.21576 * 1 2 3 28 28 H 1.08997 * 109.46970 * 270.00731 * 5 4 3 29 29 H 1.08996 * 109.46668 * 30.00938 * 5 4 3 30 30 H 1.09000 * 109.46654 * 150.00187 * 5 4 3 31 31 H 1.08000 * 126.20456 * 0.02562 * 8 7 6 32 32 H 1.08000 * 126.01089 * 180.02562 * 9 8 7 33 33 H 1.07996 * 125.80671 * 180.02562 * 10 9 8 34 34 H 1.09002 * 109.47694 * 263.89623 * 16 15 13 35 35 H 1.09001 * 109.47309 * 23.89911 * 16 15 13 36 36 H 1.09005 * 109.46908 * 143.89769 * 16 15 13 37 37 H 0.97005 * 119.99981 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2717 1.0559 0.0000 4 7 3.6114 0.6525 -0.0060 5 6 4.7739 1.5441 -0.0139 6 6 3.6520 -0.6946 -0.0035 7 7 4.7951 -1.4859 -0.0072 8 6 6.0180 -1.1245 -0.4784 9 6 6.8523 -2.1738 -0.2980 10 6 6.1224 -3.2083 0.2996 11 7 4.8937 -2.7963 0.4783 12 6 2.3363 -1.1449 0.0047 13 6 1.8918 -2.5459 0.0106 14 8 1.7137 -3.1233 1.0668 15 7 1.6818 -3.1911 -1.1539 16 6 1.8959 -2.4958 -2.4255 17 6 1.2732 -4.4986 -1.1485 18 1 1.5476 -5.1467 -0.3294 19 6 0.5055 -4.9909 -2.1970 20 7 0.0122 -4.1665 -3.0939 21 14 0.1746 -6.8244 -2.3317 22 1 -0.5392 -7.2892 -1.1153 23 1 -0.6635 -7.0895 -3.5285 24 1 1.4630 -7.5520 -2.4579 25 1 -0.3633 0.0038 1.0276 26 1 -0.3634 0.8880 -0.5171 27 1 -0.3633 -0.8920 -0.5105 28 1 5.0568 1.7630 -1.0435 29 1 4.5232 2.4724 0.4993 30 1 5.6064 1.0600 0.4967 31 1 6.2769 -0.1719 -0.9165 32 1 7.8976 -2.2077 -0.5675 33 1 6.5092 -4.1794 0.5712 34 1 0.9461 -2.1051 -2.7905 35 1 2.5943 -1.6723 -2.2762 36 1 2.3068 -3.1928 -3.1559 37 1 -0.5240 -4.5101 -3.8256 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116693492.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:36 Heat of formation + Delta-G solvation = 150.196173 kcal Electronic energy + Delta-G solvation = -23652.139229 eV Core-core repulsion = 20241.560150 eV Total energy + Delta-G solvation = -3410.579080 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.76178 -40.50120 -37.86571 -34.45364 -34.26517 -32.68970 -31.39529 -30.38779 -29.34306 -28.64913 -26.29719 -25.75811 -24.23129 -22.91500 -21.57741 -20.72999 -19.65747 -18.73429 -17.46326 -16.72624 -16.19734 -15.91343 -15.23919 -14.79113 -14.59591 -14.31112 -14.06339 -13.65495 -13.48277 -13.32013 -13.22344 -12.65687 -12.55737 -12.17994 -12.04223 -11.99823 -11.59835 -11.23111 -11.06674 -10.84415 -10.66187 -10.49458 -10.32046 -10.19987 -10.13054 -9.16442 -8.93976 -8.66848 -8.39760 -7.77603 -7.45694 -6.18731 -3.80025 1.20454 1.82479 2.34926 2.81710 2.85793 2.92205 3.26243 3.30494 3.35552 3.92767 4.23139 4.40811 4.54937 4.71940 4.92833 4.99257 5.17434 5.19164 5.24238 5.32474 5.43833 5.61908 5.87678 5.94939 5.99880 6.03479 6.17138 6.30123 6.39908 6.45815 6.64874 6.83121 6.93534 7.31270 7.32416 7.60795 7.67633 7.87355 8.30917 8.64149 9.32415 9.55088 10.16932 10.84802 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.016373 B = 0.006662 C = 0.005312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.692079 B = 4201.830347 C = 5269.948006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.120 3.880 3 N -0.282 5.282 4 N -0.378 5.378 5 C 0.094 3.906 6 C 0.325 3.675 7 N -0.308 5.308 8 C 0.030 3.970 9 C -0.249 4.249 10 C 0.044 3.956 11 N -0.226 5.226 12 C -0.208 4.208 13 C 0.535 3.465 14 O -0.571 6.571 15 N -0.435 5.435 16 C 0.120 3.880 17 C -0.298 4.298 18 H 0.095 0.905 19 C 0.032 3.968 20 N -0.884 5.884 21 Si 0.925 3.075 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.275 1.275 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.174 0.826 32 H 0.155 0.845 33 H 0.192 0.808 34 H 0.065 0.935 35 H 0.017 0.983 36 H 0.053 0.947 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.443 10.225 0.789 15.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.046 4.046 3 N -0.105 5.105 4 N -0.164 5.164 5 C -0.048 4.048 6 C 0.105 3.895 7 N -0.087 5.087 8 C -0.111 4.111 9 C -0.278 4.278 10 C -0.145 4.145 11 N -0.043 5.043 12 C -0.225 4.225 13 C 0.321 3.679 14 O -0.454 6.454 15 N -0.153 5.153 16 C -0.025 4.025 17 C -0.427 4.427 18 H 0.112 0.888 19 C -0.171 4.171 20 N -0.524 5.524 21 Si 0.752 3.248 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.099 0.901 26 H 0.094 0.906 27 H 0.108 0.892 28 H 0.096 0.904 29 H 0.115 0.885 30 H 0.102 0.898 31 H 0.192 0.808 32 H 0.173 0.827 33 H 0.209 0.791 34 H 0.083 0.917 35 H 0.036 0.964 36 H 0.072 0.928 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.147 11.023 1.535 15.061 hybrid contribution 0.986 -1.323 -0.709 1.796 sum 11.133 9.700 0.826 14.789 Atomic orbital electron populations 1.20276 0.85458 1.04079 1.03474 1.22289 0.97187 0.88544 0.96591 1.77101 0.84155 1.21483 1.27808 1.48150 1.06510 1.01624 1.60066 1.22040 0.84608 0.94695 1.03416 1.17348 0.85815 0.81838 1.04458 1.44988 1.05436 1.11305 1.46945 1.22878 0.84946 1.01402 1.01849 1.21558 1.01415 0.93714 1.11104 1.24278 0.90843 1.00531 0.98857 1.78129 1.19312 0.89194 1.17705 1.20235 0.88895 0.97097 1.16315 1.16743 0.83374 0.83093 0.84671 1.90620 1.56588 1.67211 1.30971 1.43305 1.57620 1.10996 1.03414 1.21368 0.99685 0.94592 0.86810 1.19509 1.29870 0.85143 1.08150 0.88765 1.25382 0.95257 0.99863 0.96614 1.69951 1.33564 1.34361 1.14497 0.86022 0.78386 0.82722 0.77684 1.19754 1.21054 1.20055 0.90057 0.90613 0.89188 0.90400 0.88472 0.89780 0.80849 0.82704 0.79076 0.91668 0.96423 0.92779 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.26 10.28 36.01 0.37 -0.89 16 2 C 0.12 2.37 7.26 -82.02 -0.60 1.78 16 3 N -0.28 -5.05 12.48 33.90 0.42 -4.62 16 4 N -0.38 -6.13 3.99 -66.62 -0.27 -6.39 16 5 C 0.09 0.93 9.95 59.85 0.60 1.52 16 6 C 0.32 6.34 7.33 -152.96 -1.12 5.22 16 7 N -0.31 -5.61 3.78 -11.71 -0.04 -5.66 16 8 C 0.03 0.40 9.82 -16.78 -0.16 0.23 16 9 C -0.25 -3.03 10.80 -39.98 -0.43 -3.46 16 10 C 0.04 0.67 12.02 -17.32 -0.21 0.46 16 11 N -0.23 -4.58 11.65 30.65 0.36 -4.22 16 12 C -0.21 -4.70 4.05 -104.86 -0.42 -5.13 16 13 C 0.54 14.34 6.29 -12.72 -0.08 14.26 16 14 O -0.57 -17.31 16.87 5.21 0.09 -17.22 16 15 N -0.43 -11.87 2.99 -123.57 -0.37 -12.24 16 16 C 0.12 2.94 8.64 59.85 0.52 3.45 16 17 C -0.30 -8.66 9.15 -14.98 -0.14 -8.80 16 18 H 0.09 2.86 7.52 -52.49 -0.39 2.47 16 19 C 0.03 0.86 5.18 -17.46 -0.09 0.77 16 20 N -0.88 -24.21 10.89 55.50 0.60 -23.60 16 21 Si 0.92 21.39 29.56 -169.99 -5.03 16.37 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 23 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.09 1.72 8.00 -51.93 -0.42 1.31 16 28 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 29 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.71 6.41 -51.93 -0.33 0.38 16 31 H 0.17 1.55 6.42 -52.49 -0.34 1.22 16 32 H 0.16 1.30 8.06 -52.49 -0.42 0.87 16 33 H 0.19 2.22 8.06 -52.49 -0.42 1.80 16 34 H 0.06 1.64 7.18 -51.93 -0.37 1.27 16 35 H 0.02 0.39 6.41 -51.93 -0.33 0.06 16 36 H 0.05 1.36 7.69 -51.93 -0.40 0.96 16 37 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 320.87 15.07 4.84 4.84 Total: -1.00 -36.76 320.87 -5.42 -42.19 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -4.25 Total: 1.15 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: -1.77 Total: 9.42 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: 0.70 Total: -56.74 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: 0.09 Total: -17.22 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -36.76 -5.42 -42.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116693492.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.382 kcal (2) G-P(sol) polarization free energy of solvation -36.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds