Wall clock time and date at job start Tue Mar 31 2020 05:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30369 * 125.91193 * 2 1 4 4 N 1.39904 * 109.15434 * 180.26036 * 3 2 1 5 5 C 1.46505 * 125.75817 * 179.71040 * 4 3 2 6 6 C 1.34770 * 108.48464 * 359.71881 * 4 3 2 7 7 N 1.39029 * 126.42143 * 180.02562 * 6 4 3 8 8 C 1.35952 * 126.10111 * 334.96820 * 7 6 4 9 9 C 1.35267 * 107.59679 * 179.97438 * 8 7 6 10 10 C 1.39998 * 107.97646 * 0.02562 * 9 8 7 11 11 N 1.30823 * 108.37629 * 359.75655 * 10 9 8 12 12 C 1.39068 * 107.16593 * 359.97438 * 6 4 3 13 13 C 1.46986 * 126.49319 * 180.02562 * 12 6 4 14 14 O 1.21681 * 119.99902 * 89.99423 * 13 12 6 15 15 N 1.34770 * 119.99792 * 270.00043 * 13 12 6 16 16 C 1.46498 * 120.00082 * 359.97438 * 15 13 12 17 17 C 1.36988 * 119.99981 * 179.72109 * 15 13 12 18 18 H 1.07995 * 119.99823 * 331.26221 * 17 15 13 19 19 C 1.38966 * 119.99819 * 151.26151 * 17 15 13 20 20 N 1.31424 * 120.00118 * 350.35287 * 19 17 15 21 21 Si 1.86803 * 119.99731 * 170.35562 * 19 17 15 22 22 H 1.48493 * 109.47206 * 60.00007 * 21 19 17 23 23 H 1.48498 * 109.46841 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47106 * 299.99714 * 21 19 17 25 25 H 1.08992 * 109.47017 * 270.21136 * 1 2 3 26 26 H 1.08999 * 109.47308 * 30.21333 * 1 2 3 27 27 H 1.09005 * 109.46976 * 150.21576 * 1 2 3 28 28 H 1.08997 * 109.46970 * 270.00731 * 5 4 3 29 29 H 1.08996 * 109.46668 * 30.00938 * 5 4 3 30 30 H 1.09000 * 109.46654 * 150.00187 * 5 4 3 31 31 H 1.08000 * 126.20456 * 0.02562 * 8 7 6 32 32 H 1.08000 * 126.01089 * 180.02562 * 9 8 7 33 33 H 1.07996 * 125.80671 * 180.02562 * 10 9 8 34 34 H 1.09002 * 109.47694 * 263.89623 * 16 15 13 35 35 H 1.09001 * 109.47309 * 23.89911 * 16 15 13 36 36 H 1.09005 * 109.46908 * 143.89769 * 16 15 13 37 37 H 0.97005 * 119.99981 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2717 1.0559 0.0000 4 7 3.6114 0.6525 -0.0060 5 6 4.7739 1.5441 -0.0139 6 6 3.6520 -0.6946 -0.0035 7 7 4.7951 -1.4859 -0.0072 8 6 6.0180 -1.1245 -0.4784 9 6 6.8523 -2.1738 -0.2980 10 6 6.1224 -3.2083 0.2996 11 7 4.8937 -2.7963 0.4783 12 6 2.3363 -1.1449 0.0047 13 6 1.8918 -2.5459 0.0106 14 8 1.7137 -3.1233 1.0668 15 7 1.6818 -3.1911 -1.1539 16 6 1.8959 -2.4958 -2.4255 17 6 1.2732 -4.4986 -1.1485 18 1 1.5476 -5.1467 -0.3294 19 6 0.5055 -4.9909 -2.1970 20 7 0.0122 -4.1665 -3.0939 21 14 0.1746 -6.8244 -2.3317 22 1 -0.5392 -7.2892 -1.1153 23 1 -0.6635 -7.0895 -3.5285 24 1 1.4630 -7.5520 -2.4579 25 1 -0.3633 0.0038 1.0276 26 1 -0.3634 0.8880 -0.5171 27 1 -0.3633 -0.8920 -0.5105 28 1 5.0568 1.7630 -1.0435 29 1 4.5232 2.4724 0.4993 30 1 5.6064 1.0600 0.4967 31 1 6.2769 -0.1719 -0.9165 32 1 7.8976 -2.2077 -0.5675 33 1 6.5092 -4.1794 0.5712 34 1 0.9461 -2.1051 -2.7905 35 1 2.5943 -1.6723 -2.2762 36 1 2.3068 -3.1928 -3.1559 37 1 -0.5240 -4.5101 -3.8256 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116693492.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:35 Heat of formation + Delta-G solvation = 124.411671 kcal Electronic energy + Delta-G solvation = -23653.257329 eV Core-core repulsion = 20241.560150 eV Total energy + Delta-G solvation = -3411.697180 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.05841 -41.77346 -39.87507 -36.54678 -35.58153 -34.05076 -33.41591 -31.57815 -30.51218 -30.08801 -28.23724 -27.26370 -26.06253 -24.19760 -22.92983 -22.13186 -20.94317 -20.29329 -18.99173 -18.68826 -17.82484 -17.28644 -16.90399 -16.24426 -16.04511 -15.89706 -15.57500 -15.31998 -14.73086 -14.52237 -14.45149 -14.29036 -13.84864 -13.60661 -13.50975 -13.25445 -13.21991 -13.13636 -13.02274 -12.74086 -12.43615 -12.12915 -12.04360 -11.72495 -11.43944 -11.03299 -10.51763 -10.35374 -9.86089 -9.59802 -9.22863 -8.29630 -6.00667 -0.06871 0.57586 1.05776 1.38810 1.40200 1.44494 1.52187 1.72335 1.80818 2.01077 2.30681 3.03790 3.12180 3.34007 3.42483 3.75341 4.00432 4.18870 4.20239 4.25266 4.27314 4.49535 4.49955 4.61980 4.64029 4.67451 4.79919 4.85146 4.90828 4.97259 5.19441 5.26335 5.42507 5.46523 5.61449 6.11215 6.15798 6.30904 6.53399 6.61458 7.19740 7.46797 8.10022 8.72830 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.016373 B = 0.006662 C = 0.005312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.692079 B = 4201.830347 C = 5269.948006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.110 3.890 3 N -0.277 5.277 4 N -0.360 5.360 5 C 0.076 3.924 6 C 0.337 3.663 7 N -0.329 5.329 8 C 0.033 3.967 9 C -0.234 4.234 10 C 0.046 3.954 11 N -0.312 5.312 12 C -0.268 4.268 13 C 0.542 3.458 14 O -0.624 6.624 15 N -0.446 5.446 16 C 0.142 3.858 17 C -0.339 4.339 18 H 0.065 0.935 19 C 0.000 4.000 20 N -0.897 5.897 21 Si 0.990 3.010 22 H -0.276 1.276 23 H -0.267 1.267 24 H -0.268 1.268 25 H 0.089 0.911 26 H 0.107 0.893 27 H 0.058 0.942 28 H 0.111 0.889 29 H 0.117 0.883 30 H 0.102 0.898 31 H 0.220 0.780 32 H 0.201 0.799 33 H 0.216 0.784 34 H 0.055 0.945 35 H 0.035 0.965 36 H 0.041 0.959 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.841 11.815 -0.509 18.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.056 4.056 3 N -0.101 5.101 4 N -0.145 5.145 5 C -0.062 4.062 6 C 0.114 3.886 7 N -0.109 5.109 8 C -0.105 4.105 9 C -0.262 4.262 10 C -0.143 4.143 11 N -0.130 5.130 12 C -0.285 4.285 13 C 0.330 3.670 14 O -0.511 6.511 15 N -0.164 5.164 16 C -0.002 4.002 17 C -0.467 4.467 18 H 0.083 0.917 19 C -0.202 4.202 20 N -0.535 5.535 21 Si 0.813 3.187 22 H -0.201 1.201 23 H -0.191 1.191 24 H -0.193 1.193 25 H 0.108 0.892 26 H 0.125 0.875 27 H 0.077 0.923 28 H 0.130 0.870 29 H 0.135 0.865 30 H 0.121 0.879 31 H 0.236 0.764 32 H 0.218 0.782 33 H 0.232 0.768 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.581 12.670 0.200 17.856 hybrid contribution 0.442 -1.760 -0.294 1.838 sum 13.024 10.910 -0.094 16.989 Atomic orbital electron populations 1.20272 0.84571 1.03991 1.04042 1.22471 0.98080 0.88041 0.96971 1.77035 0.84903 1.20452 1.27674 1.48599 1.07354 1.01019 1.57549 1.22667 0.82850 0.94463 1.06220 1.17307 0.85618 0.83260 1.02375 1.45076 1.06293 1.10994 1.48550 1.23769 0.82934 1.03387 1.00444 1.22102 1.03058 0.91925 1.09105 1.24943 0.89966 1.02053 0.97305 1.78093 1.22377 0.91200 1.21321 1.19899 0.91424 0.95292 1.21920 1.17225 0.81672 0.84580 0.83546 1.90544 1.58612 1.69230 1.32671 1.43471 1.57683 1.10789 1.04468 1.21130 0.99335 0.94295 0.85413 1.19451 1.32316 0.86280 1.08672 0.91671 1.26155 0.94133 1.04329 0.95541 1.70021 1.32994 1.36047 1.14473 0.85062 0.78573 0.77131 0.77937 1.20122 1.19097 1.19286 0.89221 0.87461 0.92269 0.87049 0.86452 0.87931 0.76387 0.78180 0.76777 0.92700 0.94676 0.94059 0.91674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.46 10.28 71.24 0.73 -1.72 16 2 C 0.11 4.40 7.26 43.55 0.32 4.71 16 3 N -0.28 -9.51 12.48 -46.66 -0.58 -10.10 16 4 N -0.36 -10.87 3.99 -364.68 -1.46 -12.33 16 5 C 0.08 1.17 9.95 127.77 1.27 2.44 16 6 C 0.34 13.01 7.33 132.32 0.97 13.98 16 7 N -0.33 -11.69 3.78 -190.97 -0.72 -12.41 16 8 C 0.03 0.76 9.82 83.37 0.82 1.58 16 9 C -0.23 -4.83 10.80 22.01 0.24 -4.59 16 10 C 0.05 1.35 12.02 85.27 1.02 2.37 16 11 N -0.31 -12.89 11.65 -56.95 -0.66 -13.55 16 12 C -0.27 -12.48 4.05 -20.02 -0.08 -12.56 16 13 C 0.54 30.75 6.29 86.54 0.54 31.29 16 14 O -0.62 -40.66 16.87 -4.29 -0.07 -40.73 16 15 N -0.45 -25.66 2.99 -663.09 -1.99 -27.65 16 16 C 0.14 7.21 8.64 127.77 1.10 8.31 16 17 C -0.34 -20.75 9.15 84.06 0.77 -19.98 16 18 H 0.07 4.27 7.52 -2.91 -0.02 4.24 16 19 C 0.00 0.01 5.18 84.93 0.44 0.45 16 20 N -0.90 -49.83 10.89 21.67 0.24 -49.59 16 21 Si 0.99 44.51 29.56 68.60 2.03 46.54 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 23 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 25 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 26 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 27 H 0.06 2.41 8.00 -2.38 -0.02 2.39 16 28 H 0.11 1.06 8.09 -2.39 -0.02 1.04 16 29 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.10 1.24 6.41 -2.39 -0.02 1.23 16 31 H 0.22 2.67 6.42 -2.91 -0.02 2.65 16 32 H 0.20 2.20 8.06 -2.91 -0.02 2.18 16 33 H 0.22 4.75 8.06 -2.91 -0.02 4.72 16 34 H 0.05 2.86 7.18 -2.39 -0.02 2.84 16 35 H 0.03 1.62 6.41 -2.39 -0.02 1.60 16 36 H 0.04 2.13 7.69 -2.38 -0.02 2.12 16 37 H 0.27 14.15 8.31 -92.70 -0.77 13.38 16 Total: -1.00 -87.15 320.87 6.03 -81.12 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 1.10 Total: 12.41 kcal Atomic # 6 Polarization: 18.13 SS G_CDS: 8.15 Total: 26.28 kcal Atomic # 7 Polarization: -120.45 SS G_CDS: -5.17 Total: -125.62 kcal Atomic # 8 Polarization: -40.66 SS G_CDS: -0.07 Total: -40.73 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -87.15 6.03 -81.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116693492.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.534 kcal (2) G-P(sol) polarization free energy of solvation -87.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds