Wall clock time and date at job start Tue Mar 31 2020 05:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38499 * 120.85625 * 2 1 4 4 N 1.32342 * 119.17532 * 179.71846 * 3 2 1 5 5 C 1.31856 * 121.02764 * 0.56870 * 4 3 2 6 6 N 1.31635 * 121.88759 * 359.70582 * 5 4 3 7 7 C 1.33096 * 120.71029 * 0.02562 * 6 5 4 8 8 C 1.48520 * 120.54565 * 179.97438 * 7 6 5 9 9 N 1.30698 * 126.40592 * 180.02562 * 8 7 6 10 10 O 1.21286 * 110.10629 * 179.97438 * 9 8 7 11 11 C 1.33672 * 110.01955 * 0.02562 * 10 9 8 12 12 C 1.50703 * 126.44373 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.46943 * 164.97634 * 12 11 10 14 14 N 1.46893 * 109.47497 * 44.96918 * 12 11 10 15 15 C 1.53005 * 109.46775 * 284.97017 * 12 11 10 16 16 C 1.53005 * 109.46684 * 185.00540 * 15 12 11 17 17 C 1.50703 * 109.46746 * 180.02562 * 16 15 12 18 18 H 1.08004 * 119.99789 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99998 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99881 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00097 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47660 * 89.99501 * 21 19 17 23 23 H 1.48506 * 109.47029 * 209.99782 * 21 19 17 24 24 H 1.48500 * 109.46973 * 329.99594 * 21 19 17 25 25 N 1.30975 * 107.10745 * 359.74674 * 11 10 9 26 26 H 1.09002 * 109.47152 * 269.72194 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.72294 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.72275 * 1 2 3 29 29 H 1.08002 * 120.41263 * 359.97349 * 3 2 1 30 30 H 1.07998 * 119.05341 * 179.72454 * 5 4 3 31 31 H 1.00900 * 111.00024 * 300.00393 * 14 12 11 32 32 H 1.00901 * 110.99737 * 63.95278 * 14 12 11 33 33 H 1.09006 * 109.46856 * 304.99984 * 15 12 11 34 34 H 1.08995 * 109.47194 * 65.00064 * 15 12 11 35 35 H 1.08999 * 109.46723 * 299.99520 * 16 15 12 36 36 H 1.08998 * 109.47209 * 59.99998 * 16 15 12 37 37 H 0.97001 * 119.99854 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2174 1.1890 0.0000 4 7 3.5402 1.1501 0.0057 5 6 4.1865 0.0008 0.0001 6 7 3.5530 -1.1531 -0.0056 7 6 2.2228 -1.1983 -0.0064 8 6 1.5119 -2.5023 -0.0133 9 7 0.2170 -2.6798 -0.0152 10 8 -0.0413 -3.8648 -0.0218 11 6 1.0883 -4.5794 -0.0242 12 6 1.1967 -6.0825 -0.0325 13 1 2.2132 -6.3720 -0.2991 14 7 0.2561 -6.6360 -1.0157 15 6 0.8597 -6.6258 1.3576 16 6 1.0902 -8.1382 1.3837 17 6 0.7577 -8.6733 2.7527 18 1 0.4165 -8.0018 3.5268 19 6 0.8899 -10.0200 3.0173 20 7 1.3058 -10.8375 2.0748 21 14 0.4771 -10.6835 4.7139 22 1 -0.9563 -11.0687 4.7596 23 1 1.3188 -11.8735 4.9983 24 1 0.7408 -9.6358 5.7327 25 7 2.0831 -3.7275 -0.0241 26 1 -0.3633 -0.0050 1.0277 27 1 -0.3633 -0.8875 -0.5181 28 1 -0.3633 0.8925 -0.5095 29 1 1.6982 2.1360 -0.0004 30 1 5.2664 0.0064 0.0005 31 1 -0.6939 -6.3813 -0.7904 32 1 0.4967 -6.3433 -1.9508 33 1 1.4997 -6.1479 2.0994 34 1 -0.1843 -6.4132 1.5875 35 1 0.4502 -8.6160 0.6419 36 1 2.1342 -8.3506 1.1538 37 1 1.3985 -11.7850 2.2608 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118103737.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:09 Heat of formation + Delta-G solvation = 114.507576 kcal Electronic energy + Delta-G solvation = -21794.077259 eV Core-core repulsion = 18381.950605 eV Total energy + Delta-G solvation = -3412.126653 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.71419 -41.43473 -36.83878 -36.22115 -34.43279 -34.02678 -33.06115 -31.57199 -30.31830 -28.29314 -26.58060 -26.18897 -24.24898 -23.43259 -23.19742 -21.53426 -20.23063 -18.47221 -18.21057 -17.90521 -16.90244 -16.30046 -16.00064 -15.44298 -15.26591 -14.86359 -14.53605 -14.34145 -14.12432 -14.00592 -13.42519 -13.19766 -12.51504 -12.38952 -12.26415 -12.05021 -11.80144 -11.32079 -11.18192 -11.12646 -10.92126 -10.75469 -10.59067 -10.23785 -9.88114 -9.68829 -9.62833 -9.40468 -9.05784 -8.89584 -8.29831 -5.96757 -3.99050 0.04298 0.51951 1.14276 2.20123 2.64089 2.85897 3.33915 3.40403 3.40566 3.43314 3.47122 3.74719 4.11802 4.20093 4.36108 4.48488 4.64013 4.66720 4.88813 5.05661 5.23738 5.31718 5.35195 5.39627 5.53595 5.69352 5.70515 5.76218 6.02089 6.35928 6.48267 6.51823 6.96181 7.09901 7.45071 7.61792 7.72616 7.89484 7.95073 8.06863 8.43534 9.08143 9.64403 11.14170 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.027175 B = 0.002971 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.122879 B = 9422.011432 C = 9650.981109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.155 4.155 3 C 0.151 3.849 4 N -0.510 5.510 5 C 0.292 3.708 6 N -0.478 5.478 7 C 0.248 3.752 8 C 0.203 3.797 9 N -0.361 5.361 10 O 0.082 5.918 11 C 0.167 3.833 12 C 0.185 3.815 13 H 0.128 0.872 14 N -0.811 5.811 15 C -0.102 4.102 16 C 0.032 3.968 17 C -0.524 4.524 18 H 0.053 0.947 19 C 0.059 3.941 20 N -0.892 5.892 21 Si 0.890 3.110 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.275 1.275 25 N -0.450 5.450 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.176 0.824 30 H 0.205 0.795 31 H 0.349 0.651 32 H 0.341 0.659 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.038 0.962 36 H 0.017 0.983 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.098 22.275 -7.452 23.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.162 4.162 3 C -0.016 4.016 4 N -0.223 5.223 5 C 0.004 3.996 6 N -0.192 5.192 7 C 0.101 3.899 8 C -0.067 4.067 9 N -0.069 5.069 10 O 0.021 5.979 11 C -0.056 4.056 12 C 0.069 3.931 13 H 0.146 0.854 14 N -0.340 5.340 15 C -0.141 4.141 16 C -0.005 4.005 17 C -0.562 4.562 18 H 0.071 0.929 19 C -0.143 4.143 20 N -0.531 5.531 21 Si 0.718 3.282 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.200 1.200 25 N -0.182 5.182 26 H 0.100 0.900 27 H 0.113 0.887 28 H 0.095 0.905 29 H 0.193 0.807 30 H 0.222 0.778 31 H 0.164 0.836 32 H 0.154 0.846 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.035 0.965 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.090 22.112 -7.256 23.272 hybrid contribution -1.199 0.497 0.806 1.528 sum -1.109 22.609 -6.450 23.537 Atomic orbital electron populations 1.21016 0.88193 1.04673 1.03840 1.21716 0.99776 0.93739 1.00930 1.23195 0.89538 0.97799 0.91061 1.68390 1.09951 1.31286 1.12684 1.25057 1.01460 0.81629 0.91444 1.68289 1.08147 1.31240 1.11568 1.18145 0.89222 0.87676 0.94853 1.23263 0.86753 0.92949 1.03759 1.74875 1.16043 0.95927 1.20064 1.85279 1.35735 1.11816 1.65080 1.31432 0.79033 1.01604 0.93529 1.20963 1.00279 0.74154 0.97657 0.85428 1.58805 1.06281 1.64225 1.04649 1.21867 1.00935 1.01662 0.89642 1.19022 0.97718 0.86462 0.97327 1.21236 1.44794 0.92863 0.97304 0.92907 1.24978 0.95352 0.97145 0.96785 1.69968 1.46770 1.03762 1.32581 0.86639 0.78278 0.78542 0.84787 1.20701 1.21257 1.19995 1.72180 1.29473 0.97622 1.18951 0.89990 0.88655 0.90546 0.80673 0.77818 0.83631 0.84608 0.92225 0.92311 0.94411 0.96495 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 9.29 36.01 0.33 -0.66 16 2 C -0.16 -1.60 5.94 -104.02 -0.62 -2.22 16 3 C 0.15 1.31 11.01 -17.24 -0.19 1.12 16 4 N -0.51 -5.17 10.43 -14.63 -0.15 -5.32 16 5 C 0.29 3.09 12.28 -92.24 -1.13 1.95 16 6 N -0.48 -6.52 10.40 -11.10 -0.12 -6.63 16 7 C 0.25 3.36 6.80 -82.58 -0.56 2.80 16 8 C 0.20 3.07 7.82 -156.15 -1.22 1.85 16 9 N -0.36 -5.05 8.88 30.95 0.27 -4.78 16 10 O 0.08 1.15 11.27 18.03 0.20 1.35 16 11 C 0.17 2.50 7.29 -12.99 -0.09 2.40 16 12 C 0.18 2.83 3.29 -68.86 -0.23 2.60 16 13 H 0.13 2.00 8.14 -51.93 -0.42 1.58 16 14 N -0.81 -10.94 8.67 -5.65 -0.05 -10.99 16 15 C -0.10 -1.94 4.78 -26.73 -0.13 -2.07 16 16 C 0.03 0.78 4.86 -27.88 -0.14 0.64 16 17 C -0.52 -14.43 9.11 -34.44 -0.31 -14.75 16 18 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 21 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 25 N -0.45 -7.39 11.57 -9.90 -0.11 -7.50 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.10 0.97 5.34 -51.93 -0.28 0.69 16 28 H 0.08 0.42 8.10 -51.93 -0.42 0.00 16 29 H 0.18 0.85 8.06 -52.49 -0.42 0.43 16 30 H 0.21 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.35 4.27 8.97 -39.29 -0.35 3.92 16 32 H 0.34 3.74 9.06 -39.29 -0.36 3.39 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.04 0.97 7.75 -51.93 -0.40 0.57 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 325.40 15.07 4.90 4.90 Total: -1.00 -32.60 325.40 -8.03 -40.63 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -4.31 Total: 2.32 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -4.38 Total: -4.77 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: 0.58 Total: -60.88 kcal Atomic # 8 Polarization: 1.15 SS G_CDS: 0.20 Total: 1.35 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.60 -8.03 -40.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118103737.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.135 kcal (2) G-P(sol) polarization free energy of solvation -32.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds