Wall clock time and date at job start Tue Mar 31 2020 05:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38499 * 120.85625 * 2 1 4 4 N 1.32342 * 119.17532 * 179.71846 * 3 2 1 5 5 C 1.31856 * 121.02764 * 0.56870 * 4 3 2 6 6 N 1.31635 * 121.88759 * 359.70582 * 5 4 3 7 7 C 1.33096 * 120.71029 * 0.02562 * 6 5 4 8 8 C 1.48520 * 120.54565 * 179.97438 * 7 6 5 9 9 N 1.30698 * 126.40592 * 180.02562 * 8 7 6 10 10 O 1.21286 * 110.10629 * 179.97438 * 9 8 7 11 11 C 1.33672 * 110.01955 * 0.02562 * 10 9 8 12 12 C 1.50703 * 126.44373 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.46943 * 164.97634 * 12 11 10 14 14 N 1.46893 * 109.47497 * 44.96918 * 12 11 10 15 15 C 1.53005 * 109.46775 * 284.97017 * 12 11 10 16 16 C 1.53005 * 109.46684 * 185.00540 * 15 12 11 17 17 C 1.50703 * 109.46746 * 180.02562 * 16 15 12 18 18 H 1.08004 * 119.99789 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99998 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99881 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00097 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47660 * 89.99501 * 21 19 17 23 23 H 1.48506 * 109.47029 * 209.99782 * 21 19 17 24 24 H 1.48500 * 109.46973 * 329.99594 * 21 19 17 25 25 N 1.30975 * 107.10745 * 359.74674 * 11 10 9 26 26 H 1.09002 * 109.47152 * 269.72194 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.72294 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.72275 * 1 2 3 29 29 H 1.08002 * 120.41263 * 359.97349 * 3 2 1 30 30 H 1.07998 * 119.05341 * 179.72454 * 5 4 3 31 31 H 1.00900 * 111.00024 * 300.00393 * 14 12 11 32 32 H 1.00901 * 110.99737 * 63.95278 * 14 12 11 33 33 H 1.09006 * 109.46856 * 304.99984 * 15 12 11 34 34 H 1.08995 * 109.47194 * 65.00064 * 15 12 11 35 35 H 1.08999 * 109.46723 * 299.99520 * 16 15 12 36 36 H 1.08998 * 109.47209 * 59.99998 * 16 15 12 37 37 H 0.97001 * 119.99854 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2174 1.1890 0.0000 4 7 3.5402 1.1501 0.0057 5 6 4.1865 0.0008 0.0001 6 7 3.5530 -1.1531 -0.0056 7 6 2.2228 -1.1983 -0.0064 8 6 1.5119 -2.5023 -0.0133 9 7 0.2170 -2.6798 -0.0152 10 8 -0.0413 -3.8648 -0.0218 11 6 1.0883 -4.5794 -0.0242 12 6 1.1967 -6.0825 -0.0325 13 1 2.2132 -6.3720 -0.2991 14 7 0.2561 -6.6360 -1.0157 15 6 0.8597 -6.6258 1.3576 16 6 1.0902 -8.1382 1.3837 17 6 0.7577 -8.6733 2.7527 18 1 0.4165 -8.0018 3.5268 19 6 0.8899 -10.0200 3.0173 20 7 1.3058 -10.8375 2.0748 21 14 0.4771 -10.6835 4.7139 22 1 -0.9563 -11.0687 4.7596 23 1 1.3188 -11.8735 4.9983 24 1 0.7408 -9.6358 5.7327 25 7 2.0831 -3.7275 -0.0241 26 1 -0.3633 -0.0050 1.0277 27 1 -0.3633 -0.8875 -0.5181 28 1 -0.3633 0.8925 -0.5095 29 1 1.6982 2.1360 -0.0004 30 1 5.2664 0.0064 0.0005 31 1 -0.6939 -6.3813 -0.7904 32 1 0.4967 -6.3433 -1.9508 33 1 1.4997 -6.1479 2.0994 34 1 -0.1843 -6.4132 1.5875 35 1 0.4502 -8.6160 0.6419 36 1 2.1342 -8.3506 1.1538 37 1 1.3985 -11.7850 2.2608 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118103737.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:08 Heat of formation + Delta-G solvation = 90.646043 kcal Electronic energy + Delta-G solvation = -21795.111972 eV Core-core repulsion = 18381.950605 eV Total energy + Delta-G solvation = -3413.161367 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -46.84793 -42.22729 -38.18870 -37.30093 -35.42197 -35.02530 -34.78998 -32.75601 -31.98448 -29.04480 -28.20712 -27.11459 -25.80560 -24.48205 -24.11129 -22.93088 -21.69465 -19.50431 -19.35990 -18.79264 -18.34088 -17.85013 -17.25797 -16.62318 -16.26819 -16.23142 -15.60827 -15.52781 -15.40834 -14.69531 -14.38085 -14.26814 -14.03845 -13.90224 -13.51868 -13.43220 -12.99736 -12.80718 -12.59240 -12.48458 -12.24697 -12.08899 -12.06065 -11.70453 -11.52564 -11.25351 -10.99882 -10.50684 -10.47821 -10.39060 -10.01989 -8.12400 -6.21851 -0.87922 -0.22473 0.02890 1.11353 1.43766 1.44418 1.48106 1.55058 1.86813 2.41963 2.47648 2.59365 3.07666 3.21318 3.28470 3.32892 3.50919 3.63104 3.70826 3.98873 4.03941 4.24130 4.33596 4.48318 4.57477 4.66143 4.80241 4.83300 4.93304 5.05172 5.23017 5.29094 5.59744 5.69427 5.84771 5.98551 6.00571 6.31708 6.47753 6.77354 6.87034 6.96466 7.46069 8.98855 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.027175 B = 0.002971 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.122879 B = 9422.011432 C = 9650.981109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.151 4.151 3 C 0.163 3.837 4 N -0.514 5.514 5 C 0.288 3.712 6 N -0.513 5.513 7 C 0.211 3.789 8 C 0.196 3.804 9 N -0.353 5.353 10 O 0.086 5.914 11 C 0.173 3.827 12 C 0.201 3.799 13 H 0.123 0.877 14 N -0.816 5.816 15 C -0.089 4.089 16 C 0.039 3.961 17 C -0.543 4.543 18 H 0.056 0.944 19 C 0.003 3.997 20 N -0.928 5.928 21 Si 0.957 3.043 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.267 1.267 25 N -0.476 5.476 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.110 0.890 29 H 0.220 0.780 30 H 0.230 0.770 31 H 0.358 0.642 32 H 0.357 0.643 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.020 0.980 36 H -0.009 1.009 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.005 24.470 -7.044 25.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.157 4.157 3 C -0.005 4.005 4 N -0.228 5.228 5 C 0.000 4.000 6 N -0.228 5.228 7 C 0.066 3.934 8 C -0.075 4.075 9 N -0.061 5.061 10 O 0.025 5.975 11 C -0.051 4.051 12 C 0.085 3.915 13 H 0.141 0.859 14 N -0.347 5.347 15 C -0.128 4.128 16 C 0.002 3.998 17 C -0.582 4.582 18 H 0.074 0.926 19 C -0.195 4.195 20 N -0.569 5.569 21 Si 0.782 3.218 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.192 1.192 25 N -0.208 5.208 26 H 0.104 0.896 27 H 0.094 0.906 28 H 0.129 0.871 29 H 0.236 0.764 30 H 0.246 0.754 31 H 0.174 0.826 32 H 0.172 0.828 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.039 0.961 36 H 0.009 0.991 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.833 24.312 -6.860 25.275 hybrid contribution -0.915 -0.080 0.638 1.119 sum -1.748 24.232 -6.222 25.079 Atomic orbital electron populations 1.21051 0.86765 1.05383 1.04197 1.21988 1.00760 0.93102 0.99856 1.23917 0.89076 0.98780 0.88726 1.68500 1.10782 1.30820 1.12660 1.25582 1.02577 0.81108 0.90692 1.68235 1.08654 1.32877 1.13066 1.18383 0.89768 0.87996 0.97232 1.23671 0.87019 0.93349 1.03422 1.74910 1.15620 0.95596 1.19959 1.85274 1.35295 1.11938 1.64974 1.31092 0.79216 1.01101 0.93670 1.20495 1.00433 0.74512 0.96048 0.85933 1.58757 1.06532 1.64180 1.05264 1.21564 1.01315 0.98019 0.91938 1.18827 0.95495 0.89942 0.95534 1.21718 1.44414 0.93341 0.98682 0.92604 1.25857 0.95263 0.97609 1.00762 1.70093 1.47939 1.04087 1.34745 0.85569 0.78294 0.77865 0.80029 1.19773 1.20986 1.19173 1.72159 1.30361 0.98608 1.19710 0.89599 0.90573 0.87124 0.76384 0.75366 0.82638 0.82775 0.92866 0.91462 0.96136 0.99090 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.65 9.29 71.24 0.66 -0.99 16 2 C -0.15 -2.82 5.94 -19.48 -0.12 -2.94 16 3 C 0.16 2.32 11.01 84.68 0.93 3.26 16 4 N -0.51 -9.28 10.43 -200.19 -2.09 -11.37 16 5 C 0.29 5.77 12.28 180.91 2.22 8.00 16 6 N -0.51 -13.91 10.40 -189.02 -1.97 -15.87 16 7 C 0.21 5.64 6.80 42.02 0.29 5.93 16 8 C 0.20 5.90 7.82 137.35 1.07 6.98 16 9 N -0.35 -9.69 8.88 -59.27 -0.53 -10.22 16 10 O 0.09 2.36 11.27 74.59 0.84 3.21 16 11 C 0.17 5.14 7.29 88.36 0.64 5.78 16 12 C 0.20 6.18 3.29 44.17 0.15 6.32 16 13 H 0.12 3.93 8.14 -2.39 -0.02 3.91 16 14 N -0.82 -21.73 8.67 -171.80 -1.49 -23.22 16 15 C -0.09 -3.42 4.78 30.60 0.15 -3.28 16 16 C 0.04 1.96 4.86 29.85 0.15 2.11 16 17 C -0.54 -30.26 9.11 25.60 0.23 -30.02 16 18 H 0.06 3.00 7.74 -2.91 -0.02 2.98 16 19 C 0.00 0.17 5.46 84.65 0.46 0.64 16 20 N -0.93 -55.82 13.29 21.45 0.28 -55.53 16 21 Si 0.96 44.05 29.54 68.60 2.03 46.08 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 25 N -0.48 -15.78 11.57 -302.64 -3.50 -19.28 16 26 H 0.09 1.17 8.14 -2.39 -0.02 1.16 16 27 H 0.08 1.43 5.34 -2.39 -0.01 1.41 16 28 H 0.11 0.79 8.10 -2.38 -0.02 0.77 16 29 H 0.22 1.06 8.06 -2.91 -0.02 1.04 16 30 H 0.23 2.98 8.06 -2.91 -0.02 2.96 16 31 H 0.36 8.47 8.97 -89.69 -0.80 7.67 16 32 H 0.36 7.59 9.06 -89.69 -0.81 6.78 16 33 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 34 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.02 1.08 7.75 -2.39 -0.02 1.06 16 36 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 37 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -71.28 325.40 -0.07 -71.35 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -0.48 Total: 13.09 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 6.84 Total: 1.78 kcal Atomic # 7 Polarization: -126.21 SS G_CDS: -9.29 Total: -135.50 kcal Atomic # 8 Polarization: 2.36 SS G_CDS: 0.84 Total: 3.21 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -71.28 -0.07 -71.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118103737.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.996 kcal (2) G-P(sol) polarization free energy of solvation -71.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds