Wall clock time and date at job start Tue Mar 31 2020 05:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38499 * 120.85625 * 2 1 4 4 N 1.32342 * 119.17532 * 179.71846 * 3 2 1 5 5 C 1.31856 * 121.02764 * 0.56870 * 4 3 2 6 6 N 1.31635 * 121.88759 * 359.70582 * 5 4 3 7 7 C 1.33096 * 120.71029 * 0.02562 * 6 5 4 8 8 C 1.48520 * 120.54565 * 179.97438 * 7 6 5 9 9 N 1.30698 * 126.40592 * 180.02562 * 8 7 6 10 10 O 1.21286 * 110.10629 * 179.97438 * 9 8 7 11 11 C 1.33672 * 110.01955 * 0.02562 * 10 9 8 12 12 C 1.50703 * 126.44373 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.46873 * 194.97474 * 12 11 10 14 14 N 1.46898 * 109.47096 * 314.96987 * 12 11 10 15 15 C 1.52996 * 109.47492 * 74.97072 * 12 11 10 16 16 C 1.53002 * 109.47194 * 174.99722 * 15 12 11 17 17 C 1.50690 * 109.47097 * 180.02562 * 16 15 12 18 18 H 1.08001 * 120.00083 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00221 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99986 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00382 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46826 * 89.99878 * 21 19 17 23 23 H 1.48496 * 109.47111 * 209.99715 * 21 19 17 24 24 H 1.48494 * 109.46923 * 329.99880 * 21 19 17 25 25 N 1.30975 * 107.10745 * 359.74674 * 11 10 9 26 26 H 1.09002 * 109.47152 * 269.72194 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.72294 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.72275 * 1 2 3 29 29 H 1.08002 * 120.41263 * 359.97349 * 3 2 1 30 30 H 1.07998 * 119.05341 * 179.72454 * 5 4 3 31 31 H 1.00900 * 111.00332 * 60.00146 * 14 12 11 32 32 H 1.00897 * 111.00249 * 183.95806 * 14 12 11 33 33 H 1.08997 * 109.47064 * 294.99684 * 15 12 11 34 34 H 1.08999 * 109.46769 * 55.00012 * 15 12 11 35 35 H 1.08997 * 109.47084 * 299.99950 * 16 15 12 36 36 H 1.08994 * 109.46687 * 60.00155 * 16 15 12 37 37 H 0.96998 * 120.00502 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2174 1.1890 0.0000 4 7 3.5402 1.1501 0.0057 5 6 4.1865 0.0008 0.0001 6 7 3.5530 -1.1531 -0.0056 7 6 2.2228 -1.1983 -0.0064 8 6 1.5119 -2.5023 -0.0133 9 7 0.2170 -2.6798 -0.0152 10 8 -0.0413 -3.8648 -0.0218 11 6 1.0883 -4.5794 -0.0242 12 6 1.1967 -6.0825 -0.0325 13 1 2.2127 -6.3750 0.2329 14 7 0.2542 -6.6468 0.9429 15 6 0.8623 -6.6104 -1.4290 16 6 1.0927 -8.1223 -1.4715 17 6 0.7640 -8.6421 -2.8472 18 1 0.4242 -7.9621 -3.6144 19 6 0.8959 -9.9858 -3.1263 20 7 1.3092 -10.8139 -2.1919 21 14 0.4876 -10.6303 -4.8315 22 1 1.7049 -10.5883 -5.6810 23 1 0.0038 -12.0304 -4.7287 24 1 -0.5702 -9.7844 -5.4401 25 7 2.0831 -3.7275 -0.0241 26 1 -0.3633 -0.0050 1.0277 27 1 -0.3633 -0.8875 -0.5181 28 1 -0.3633 0.8925 -0.5095 29 1 1.6982 2.1360 -0.0004 30 1 5.2664 0.0064 0.0005 31 1 -0.6954 -6.3897 0.7187 32 1 0.3529 -7.6492 1.0029 33 1 -0.1814 -6.3953 -1.6584 34 1 1.5036 -6.1243 -2.1643 35 1 2.1364 -8.3374 -1.2421 36 1 0.4515 -8.6083 -0.7363 37 1 1.4023 -11.7593 -2.3882 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118103741.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:12 Heat of formation + Delta-G solvation = 111.990244 kcal Electronic energy + Delta-G solvation = -21796.048372 eV Core-core repulsion = 18383.812559 eV Total energy + Delta-G solvation = -3412.235813 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.61141 -41.37772 -36.93708 -36.14915 -34.40587 -33.99367 -33.10089 -31.60324 -30.10398 -28.23684 -26.69532 -26.11505 -24.34834 -23.35938 -23.19285 -21.56654 -20.31837 -18.40356 -18.08461 -17.85136 -16.94600 -16.49896 -15.92038 -15.38935 -14.89119 -14.80442 -14.54786 -14.22277 -14.00405 -13.56908 -13.48883 -13.34295 -13.11551 -12.31703 -12.26467 -12.22552 -11.80265 -11.26891 -11.21103 -11.08654 -11.02308 -10.90994 -10.67101 -10.21488 -10.07233 -9.66969 -9.63063 -9.50245 -9.31687 -8.59113 -8.47069 -6.12981 -4.16326 0.11257 0.57485 1.25429 2.28979 2.74656 2.92150 3.25472 3.32383 3.35045 3.46304 3.50539 3.79700 4.17771 4.21704 4.36530 4.41751 4.73479 4.88514 4.95796 5.10653 5.23612 5.29274 5.36084 5.39190 5.54802 5.64802 5.78054 5.82536 6.07964 6.22564 6.36692 6.53984 6.73454 7.14674 7.41212 7.53531 7.58065 7.67330 7.83575 8.04732 8.24583 8.89083 9.49032 10.97954 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.027260 B = 0.002970 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.894855 B = 9424.035820 C = 9653.125467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.155 4.155 3 C 0.151 3.849 4 N -0.511 5.511 5 C 0.291 3.709 6 N -0.478 5.478 7 C 0.250 3.750 8 C 0.204 3.796 9 N -0.361 5.361 10 O 0.087 5.913 11 C 0.222 3.778 12 C 0.179 3.821 13 H 0.126 0.874 14 N -0.839 5.839 15 C -0.143 4.143 16 C 0.025 3.975 17 C -0.525 4.525 18 H 0.055 0.945 19 C 0.060 3.940 20 N -0.892 5.892 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.274 1.274 25 N -0.452 5.452 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.176 0.824 30 H 0.205 0.795 31 H 0.344 0.656 32 H 0.368 0.632 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.023 0.977 36 H 0.020 0.980 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.258 20.386 6.222 21.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.162 4.162 3 C -0.016 4.016 4 N -0.224 5.224 5 C 0.004 3.996 6 N -0.193 5.193 7 C 0.103 3.897 8 C -0.067 4.067 9 N -0.070 5.070 10 O 0.026 5.974 11 C 0.001 3.999 12 C 0.065 3.935 13 H 0.144 0.856 14 N -0.373 5.373 15 C -0.183 4.183 16 C -0.012 4.012 17 C -0.564 4.564 18 H 0.074 0.926 19 C -0.142 4.142 20 N -0.531 5.531 21 Si 0.721 3.279 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.199 1.199 25 N -0.184 5.184 26 H 0.099 0.901 27 H 0.114 0.886 28 H 0.094 0.906 29 H 0.193 0.807 30 H 0.221 0.779 31 H 0.157 0.843 32 H 0.185 0.815 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.041 0.959 36 H 0.039 0.961 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.070 21.383 6.814 22.443 hybrid contribution -1.353 -1.097 -1.786 2.495 sum -1.283 20.286 5.028 20.939 Atomic orbital electron populations 1.21017 0.88189 1.04767 1.03751 1.21712 0.99784 0.93721 1.00943 1.23185 0.89535 0.97789 0.91122 1.68384 1.09958 1.31295 1.12773 1.25045 1.01437 0.81652 0.91502 1.68290 1.08182 1.31208 1.11577 1.18141 0.89186 0.87689 0.94687 1.23180 0.86779 0.92792 1.03930 1.74873 1.15995 0.95964 1.20118 1.85281 1.35586 1.11698 1.64870 1.29233 0.78971 0.99114 0.92561 1.20308 1.00438 0.78127 0.94591 0.85622 1.58976 1.09051 1.19118 1.50173 1.22554 1.01426 1.01512 0.92851 1.19102 0.97635 0.86711 0.97737 1.21132 1.45363 0.92994 0.96870 0.92625 1.24998 0.95050 0.97033 0.97139 1.69937 1.46465 1.03764 1.32920 0.86572 0.78727 0.78175 0.84431 1.20570 1.21120 1.19868 1.72131 1.29127 0.97648 1.19542 0.90052 0.88554 0.90574 0.80712 0.77867 0.84328 0.81468 0.92111 0.91891 0.95915 0.96134 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 9.29 36.01 0.33 -0.71 16 2 C -0.16 -1.66 5.94 -104.02 -0.62 -2.28 16 3 C 0.15 1.35 11.01 -17.24 -0.19 1.16 16 4 N -0.51 -5.33 10.43 -14.63 -0.15 -5.48 16 5 C 0.29 3.17 12.28 -92.24 -1.13 2.04 16 6 N -0.48 -6.70 10.40 -11.10 -0.12 -6.82 16 7 C 0.25 3.50 6.80 -82.58 -0.56 2.94 16 8 C 0.20 3.20 7.82 -156.15 -1.22 1.98 16 9 N -0.36 -5.32 8.88 30.95 0.27 -5.04 16 10 O 0.09 1.30 11.27 18.03 0.20 1.51 16 11 C 0.22 3.53 7.30 -12.99 -0.09 3.44 16 12 C 0.18 2.80 3.35 -68.87 -0.23 2.57 16 13 H 0.13 2.00 8.14 -51.93 -0.42 1.58 16 14 N -0.84 -11.74 9.17 -5.65 -0.05 -11.79 16 15 C -0.14 -2.62 4.78 -26.73 -0.13 -2.75 16 16 C 0.03 0.58 4.74 -27.89 -0.13 0.45 16 17 C -0.53 -13.96 9.11 -34.45 -0.31 -14.27 16 18 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -25.36 13.29 55.43 0.74 -24.63 16 21 Si 0.89 20.89 29.54 -169.99 -5.02 15.86 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 N -0.45 -7.78 11.57 -9.90 -0.11 -7.89 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.10 1.04 5.34 -51.93 -0.28 0.76 16 28 H 0.08 0.46 8.10 -51.93 -0.42 0.04 16 29 H 0.18 0.90 8.06 -52.49 -0.42 0.48 16 30 H 0.20 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.34 4.38 8.97 -39.29 -0.35 4.03 16 32 H 0.37 5.22 7.55 -39.29 -0.30 4.92 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.02 0.47 6.87 -51.93 -0.36 0.12 16 37 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 323.45 15.07 4.87 4.87 Total: -1.00 -30.95 323.45 -7.96 -38.91 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -4.20 Total: 4.40 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -4.39 Total: -3.90 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: 0.58 Total: -61.65 kcal Atomic # 8 Polarization: 1.30 SS G_CDS: 0.20 Total: 1.51 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.95 -7.96 -38.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118103741.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.901 kcal (2) G-P(sol) polarization free energy of solvation -30.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds