Wall clock time and date at job start Tue Mar 31 2020 05:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38499 * 120.85625 * 2 1 4 4 N 1.32342 * 119.17532 * 179.71846 * 3 2 1 5 5 C 1.31856 * 121.02764 * 0.56870 * 4 3 2 6 6 N 1.31635 * 121.88759 * 359.70582 * 5 4 3 7 7 C 1.33096 * 120.71029 * 0.02562 * 6 5 4 8 8 C 1.48520 * 120.54565 * 179.97438 * 7 6 5 9 9 N 1.30698 * 126.40592 * 180.02562 * 8 7 6 10 10 O 1.21286 * 110.10629 * 179.97438 * 9 8 7 11 11 C 1.33672 * 110.01955 * 0.02562 * 10 9 8 12 12 C 1.50703 * 126.44373 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.46873 * 194.97474 * 12 11 10 14 14 N 1.46898 * 109.47096 * 314.96987 * 12 11 10 15 15 C 1.52996 * 109.47492 * 74.97072 * 12 11 10 16 16 C 1.53002 * 109.47194 * 174.99722 * 15 12 11 17 17 C 1.50690 * 109.47097 * 180.02562 * 16 15 12 18 18 H 1.08001 * 120.00083 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00221 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99986 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00382 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46826 * 89.99878 * 21 19 17 23 23 H 1.48496 * 109.47111 * 209.99715 * 21 19 17 24 24 H 1.48494 * 109.46923 * 329.99880 * 21 19 17 25 25 N 1.30975 * 107.10745 * 359.74674 * 11 10 9 26 26 H 1.09002 * 109.47152 * 269.72194 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.72294 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.72275 * 1 2 3 29 29 H 1.08002 * 120.41263 * 359.97349 * 3 2 1 30 30 H 1.07998 * 119.05341 * 179.72454 * 5 4 3 31 31 H 1.00900 * 111.00332 * 60.00146 * 14 12 11 32 32 H 1.00897 * 111.00249 * 183.95806 * 14 12 11 33 33 H 1.08997 * 109.47064 * 294.99684 * 15 12 11 34 34 H 1.08999 * 109.46769 * 55.00012 * 15 12 11 35 35 H 1.08997 * 109.47084 * 299.99950 * 16 15 12 36 36 H 1.08994 * 109.46687 * 60.00155 * 16 15 12 37 37 H 0.96998 * 120.00502 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2174 1.1890 0.0000 4 7 3.5402 1.1501 0.0057 5 6 4.1865 0.0008 0.0001 6 7 3.5530 -1.1531 -0.0056 7 6 2.2228 -1.1983 -0.0064 8 6 1.5119 -2.5023 -0.0133 9 7 0.2170 -2.6798 -0.0152 10 8 -0.0413 -3.8648 -0.0218 11 6 1.0883 -4.5794 -0.0242 12 6 1.1967 -6.0825 -0.0325 13 1 2.2127 -6.3750 0.2329 14 7 0.2542 -6.6468 0.9429 15 6 0.8623 -6.6104 -1.4290 16 6 1.0927 -8.1223 -1.4715 17 6 0.7640 -8.6421 -2.8472 18 1 0.4242 -7.9621 -3.6144 19 6 0.8959 -9.9858 -3.1263 20 7 1.3092 -10.8139 -2.1919 21 14 0.4876 -10.6303 -4.8315 22 1 1.7049 -10.5883 -5.6810 23 1 0.0038 -12.0304 -4.7287 24 1 -0.5702 -9.7844 -5.4401 25 7 2.0831 -3.7275 -0.0241 26 1 -0.3633 -0.0050 1.0277 27 1 -0.3633 -0.8875 -0.5181 28 1 -0.3633 0.8925 -0.5095 29 1 1.6982 2.1360 -0.0004 30 1 5.2664 0.0064 0.0005 31 1 -0.6954 -6.3897 0.7187 32 1 0.3529 -7.6492 1.0029 33 1 -0.1814 -6.3953 -1.6584 34 1 1.5036 -6.1243 -2.1643 35 1 2.1364 -8.3374 -1.2421 36 1 0.4515 -8.6083 -0.7363 37 1 1.4023 -11.7593 -2.3882 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118103741.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:11 Heat of formation + Delta-G solvation = 89.823218 kcal Electronic energy + Delta-G solvation = -21797.009607 eV Core-core repulsion = 18383.812559 eV Total energy + Delta-G solvation = -3413.197047 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -46.80167 -42.20227 -38.33024 -37.27912 -35.43949 -35.00773 -34.78375 -32.81422 -31.73956 -29.02437 -28.23617 -27.08379 -25.96469 -24.45848 -24.10301 -22.95759 -21.73568 -19.47738 -19.29020 -18.82248 -18.44626 -17.84229 -17.31234 -16.46743 -16.23869 -15.99652 -15.57308 -15.43240 -15.11745 -14.87756 -14.63189 -14.36860 -14.07823 -13.96043 -13.55091 -13.40714 -13.06860 -12.91345 -12.75171 -12.51034 -12.18641 -12.11095 -12.06359 -11.80423 -11.55568 -11.33664 -11.15197 -10.54712 -10.47969 -10.36845 -9.84865 -8.20601 -6.30147 -0.84654 -0.19768 0.07780 1.15064 1.40943 1.41916 1.51385 1.53423 1.88537 2.38906 2.43418 2.61895 3.09658 3.13855 3.28240 3.33803 3.64394 3.67964 3.73551 3.98255 4.03778 4.17612 4.32217 4.50322 4.58362 4.66306 4.74309 4.80752 4.86473 5.05109 5.08143 5.32190 5.47866 5.66418 5.71898 5.81343 5.94765 6.21790 6.42481 6.80552 6.84974 6.89858 7.38860 8.90221 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.027260 B = 0.002970 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.894855 B = 9424.035820 C = 9653.125467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.150 4.150 3 C 0.163 3.837 4 N -0.514 5.514 5 C 0.287 3.713 6 N -0.514 5.514 7 C 0.212 3.788 8 C 0.197 3.803 9 N -0.353 5.353 10 O 0.088 5.912 11 C 0.222 3.778 12 C 0.193 3.807 13 H 0.122 0.878 14 N -0.832 5.832 15 C -0.127 4.127 16 C 0.030 3.970 17 C -0.545 4.545 18 H 0.055 0.945 19 C 0.007 3.993 20 N -0.925 5.925 21 Si 0.956 3.044 22 H -0.277 1.277 23 H -0.281 1.281 24 H -0.266 1.266 25 N -0.478 5.478 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.109 0.891 29 H 0.220 0.780 30 H 0.230 0.770 31 H 0.354 0.646 32 H 0.368 0.632 33 H 0.069 0.931 34 H 0.052 0.948 35 H -0.001 1.001 36 H 0.018 0.982 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.133 22.519 5.892 23.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.157 4.157 3 C -0.005 4.005 4 N -0.228 5.228 5 C 0.000 4.000 6 N -0.229 5.229 7 C 0.067 3.933 8 C -0.073 4.073 9 N -0.061 5.061 10 O 0.028 5.972 11 C 0.001 3.999 12 C 0.079 3.921 13 H 0.139 0.861 14 N -0.366 5.366 15 C -0.168 4.168 16 C -0.007 4.007 17 C -0.583 4.583 18 H 0.073 0.927 19 C -0.192 4.192 20 N -0.565 5.565 21 Si 0.782 3.218 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.190 1.190 25 N -0.211 5.211 26 H 0.107 0.893 27 H 0.092 0.908 28 H 0.128 0.872 29 H 0.236 0.764 30 H 0.246 0.754 31 H 0.167 0.833 32 H 0.185 0.815 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.018 0.982 36 H 0.036 0.964 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.825 23.515 6.487 24.407 hybrid contribution -1.073 -1.639 -1.657 2.565 sum -1.897 21.877 4.830 22.484 Atomic orbital electron populations 1.21052 0.86762 1.05287 1.04300 1.21986 1.00772 0.93073 0.99837 1.23914 0.89070 0.98754 0.88739 1.68497 1.10778 1.30806 1.12697 1.25579 1.02569 0.81105 0.90722 1.68232 1.08659 1.32894 1.13071 1.18369 0.89760 0.87941 0.97195 1.23620 0.87033 0.93226 1.03444 1.74908 1.15606 0.95554 1.20074 1.85273 1.35196 1.11903 1.64863 1.29038 0.79212 0.98884 0.92793 1.19990 1.00648 0.78288 0.93161 0.86067 1.58955 1.09418 1.19017 1.49207 1.22294 1.01685 0.98325 0.94467 1.18965 0.95940 0.89683 0.96126 1.21599 1.44952 0.93356 0.98386 0.92678 1.25816 0.95050 0.97463 1.00825 1.70042 1.47594 1.04038 1.34824 0.85578 0.78630 0.77653 0.79985 1.20269 1.20685 1.19012 1.72108 1.30020 0.98665 1.20287 0.89297 0.90753 0.87216 0.76355 0.75361 0.83260 0.81472 0.91265 0.92884 0.98250 0.96383 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 9.29 71.24 0.66 -1.08 16 2 C -0.15 -2.93 5.94 -19.48 -0.12 -3.04 16 3 C 0.16 2.42 11.01 84.68 0.93 3.35 16 4 N -0.51 -9.55 10.43 -200.19 -2.09 -11.64 16 5 C 0.29 5.94 12.28 180.91 2.22 8.16 16 6 N -0.51 -14.32 10.40 -189.02 -1.97 -16.28 16 7 C 0.21 5.87 6.80 42.02 0.29 6.16 16 8 C 0.20 6.22 7.82 137.35 1.07 7.30 16 9 N -0.35 -10.27 8.88 -59.27 -0.53 -10.80 16 10 O 0.09 2.61 11.27 74.59 0.84 3.45 16 11 C 0.22 7.07 7.30 88.36 0.65 7.71 16 12 C 0.19 6.07 3.35 44.17 0.15 6.22 16 13 H 0.12 3.95 8.14 -2.39 -0.02 3.93 16 14 N -0.83 -22.93 9.17 -171.80 -1.58 -24.50 16 15 C -0.13 -4.69 4.78 30.59 0.15 -4.55 16 16 C 0.03 1.41 4.74 29.85 0.14 1.55 16 17 C -0.54 -29.15 9.11 25.60 0.23 -28.92 16 18 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 19 C 0.01 0.39 5.46 84.65 0.46 0.85 16 20 N -0.93 -53.18 13.29 21.45 0.28 -52.89 16 21 Si 0.96 42.77 29.54 68.60 2.03 44.80 16 22 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 24 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 25 N -0.48 -16.68 11.57 -302.64 -3.50 -20.18 16 26 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.07 1.50 5.34 -2.39 -0.01 1.49 16 28 H 0.11 0.88 8.10 -2.38 -0.02 0.86 16 29 H 0.22 1.16 8.06 -2.91 -0.02 1.14 16 30 H 0.23 3.10 8.06 -2.91 -0.02 3.07 16 31 H 0.35 8.69 8.97 -89.69 -0.80 7.89 16 32 H 0.37 10.39 7.55 -89.70 -0.68 9.71 16 33 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.00 -0.05 8.14 -2.39 -0.02 -0.06 16 36 H 0.02 0.84 6.87 -2.39 -0.02 0.83 16 37 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -67.18 323.45 -0.02 -67.20 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -0.35 Total: 17.13 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 6.84 Total: 3.71 kcal Atomic # 7 Polarization: -126.92 SS G_CDS: -9.37 Total: -136.29 kcal Atomic # 8 Polarization: 2.61 SS G_CDS: 0.84 Total: 3.45 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -67.18 -0.02 -67.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118103741.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.025 kcal (2) G-P(sol) polarization free energy of solvation -67.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds