Wall clock time and date at job start Tue Mar 31 2020 06:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35736 * 117.00032 * 2 1 4 4 C 1.39286 * 120.84530 * 0.02562 * 3 2 1 5 5 C 1.37954 * 119.09386 * 179.97438 * 4 3 2 6 6 N 1.31972 * 120.82147 * 359.97438 * 5 4 3 7 7 C 1.31951 * 121.86509 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.58818 * 180.02562 * 7 6 5 9 9 N 1.46497 * 109.47236 * 305.00061 * 8 7 6 10 10 C 1.35313 * 125.86667 * 125.29282 * 9 8 7 11 11 C 1.35349 * 106.17218 * 180.18574 * 10 9 8 12 12 C 1.50697 * 126.75364 * 179.85517 * 11 10 9 13 13 N 1.46499 * 109.47276 * 94.71254 * 12 11 10 14 14 C 1.36935 * 119.99938 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00518 * 359.72965 * 14 13 12 16 16 C 1.38817 * 119.99990 * 179.97438 * 14 13 12 17 17 N 1.31617 * 119.99869 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99909 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47028 * 60.00888 * 18 16 14 20 20 H 1.48503 * 109.46851 * 180.02562 * 18 16 14 21 21 H 1.48492 * 109.47412 * 300.00497 * 18 16 14 22 22 N 1.33774 * 106.49914 * 359.59715 * 11 10 9 23 23 N 1.28635 * 108.88067 * 0.25663 * 22 11 10 24 24 C 1.37987 * 120.81941 * 0.27335 * 7 6 5 25 25 H 1.08990 * 109.47054 * 60.00032 * 1 2 3 26 26 H 1.09003 * 109.46952 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47046 * 299.99768 * 1 2 3 28 28 H 1.08006 * 120.45598 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.58791 * 180.02562 * 5 4 3 30 30 H 1.08997 * 109.46644 * 184.99815 * 8 7 6 31 31 H 1.09004 * 109.46850 * 65.00338 * 8 7 6 32 32 H 1.08001 * 126.91913 * 0.04070 * 10 9 8 33 33 H 1.09004 * 109.47205 * 334.71228 * 12 11 10 34 34 H 1.09005 * 109.47240 * 214.71438 * 12 11 10 35 35 H 0.96999 * 119.99984 * 0.02562 * 13 12 11 36 36 H 0.96996 * 119.99743 * 179.97438 * 17 16 14 37 37 H 1.08008 * 120.45207 * 179.70412 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3040 2.3886 0.0005 5 6 1.9675 3.5981 0.0011 6 7 3.2864 3.6458 0.0016 7 6 4.0230 2.5510 0.0021 8 6 5.5257 2.6652 0.0032 9 7 5.9535 3.4922 -1.1278 10 6 6.7336 4.5952 -1.0531 11 6 6.8741 5.0443 -2.3222 12 6 7.6536 6.2539 -2.7696 13 7 9.0008 5.8444 -3.1740 14 6 9.8957 6.7800 -3.6203 15 1 9.6070 7.8190 -3.6782 16 6 11.1725 6.3921 -4.0030 17 7 11.5227 5.1250 -3.9375 18 14 12.3930 7.6682 -4.6124 19 1 12.6285 8.6760 -3.5475 20 1 13.6749 7.0022 -4.9565 21 1 11.8457 8.3405 -5.8180 22 7 6.1894 4.2000 -3.1019 23 7 5.6557 3.2917 -2.3638 24 6 3.4345 1.3029 -0.0035 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.2244 2.3566 0.0014 29 1 1.4007 4.5174 0.0019 30 1 5.9656 1.6719 -0.0860 31 1 5.8543 3.1257 0.9349 32 1 7.1570 5.0312 -0.1603 33 1 7.7219 6.9666 -1.9477 34 1 7.1469 6.7208 -3.6142 35 1 9.2589 4.9107 -3.1258 36 1 12.4146 4.8540 -4.2053 37 1 4.0432 0.4107 -0.0079 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119335141.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:32 Heat of formation + Delta-G solvation = 120.263759 kcal Electronic energy + Delta-G solvation = -21420.889084 eV Core-core repulsion = 18009.012037 eV Total energy + Delta-G solvation = -3411.877046 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.81326 -41.03796 -38.80764 -35.34112 -34.34926 -32.11555 -31.82955 -31.53293 -29.76504 -28.48537 -27.15663 -25.66878 -23.94899 -22.90139 -22.65625 -21.39019 -20.44650 -18.53441 -17.64170 -17.14229 -16.74366 -16.32856 -16.31032 -16.05071 -15.12232 -14.71001 -14.50727 -14.40102 -14.12059 -13.80999 -13.58639 -13.18937 -12.91341 -12.71135 -12.50113 -12.07297 -11.83122 -11.72664 -11.12136 -10.82468 -10.73433 -10.33781 -10.08006 -9.97366 -9.78141 -9.63820 -9.50621 -9.31048 -8.80243 -8.67537 -6.83691 -5.66859 -2.95941 0.55896 0.93642 1.98529 2.48590 2.67598 3.07268 3.40845 3.51276 3.55181 3.56727 3.70822 4.16783 4.38067 4.49526 4.53321 4.60262 4.66605 4.69652 4.77598 4.91620 4.94217 4.99200 5.30604 5.31797 5.44982 5.59337 5.60416 5.74371 5.94307 6.04724 6.27305 6.54210 6.69159 6.79046 6.87066 6.92303 7.61001 7.77469 8.50740 8.99840 9.62207 10.19138 10.55373 11.56009 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.050160 B = 0.002584 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.081486 B =10835.192157 C =11017.964754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.309 6.309 3 C 0.169 3.831 4 C -0.256 4.256 5 C 0.143 3.857 6 N -0.488 5.488 7 C 0.146 3.854 8 C 0.175 3.825 9 N -0.291 5.291 10 C -0.034 4.034 11 C -0.008 4.008 12 C 0.234 3.766 13 N -0.726 5.726 14 C -0.238 4.238 15 H 0.072 0.928 16 C -0.015 4.015 17 N -0.933 5.933 18 Si 0.910 3.090 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.286 1.286 22 N -0.254 5.254 23 N -0.093 5.093 24 C -0.181 4.181 25 H 0.060 0.940 26 H 0.105 0.895 27 H 0.059 0.941 28 H 0.141 0.859 29 H 0.161 0.839 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.188 0.812 33 H 0.037 0.963 34 H 0.038 0.962 35 H 0.385 0.615 36 H 0.255 0.745 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.803 -9.773 14.920 29.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.220 6.220 3 C 0.116 3.884 4 C -0.277 4.277 5 C -0.014 4.014 6 N -0.201 5.201 7 C 0.008 3.992 8 C 0.052 3.948 9 N -0.085 5.085 10 C -0.184 4.184 11 C -0.145 4.145 12 C 0.105 3.895 13 N -0.371 5.371 14 C -0.369 4.369 15 H 0.090 0.910 16 C -0.211 4.211 17 N -0.582 5.582 18 Si 0.740 3.260 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.212 1.212 22 N -0.122 5.122 23 N -0.072 5.072 24 C -0.202 4.202 25 H 0.078 0.922 26 H 0.123 0.877 27 H 0.077 0.923 28 H 0.159 0.841 29 H 0.178 0.822 30 H 0.134 0.866 31 H 0.143 0.857 32 H 0.205 0.795 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.219 0.781 36 H 0.065 0.935 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -23.999 -9.963 13.884 29.462 hybrid contribution 0.522 0.176 0.563 0.788 sum -23.477 -9.787 14.447 29.252 Atomic orbital electron populations 1.23168 0.77517 1.04561 1.01766 1.86078 1.22094 1.26132 1.87736 1.19224 0.92249 0.84690 0.92255 1.22278 1.01701 0.93263 1.10462 1.22550 0.89674 0.97205 0.92009 1.67470 1.07273 1.31500 1.13833 1.20750 0.95269 0.88240 0.94944 1.20746 0.89277 0.97033 0.87731 1.46940 1.34101 1.20134 1.07301 1.23363 1.01510 0.91817 1.01741 1.22406 1.01894 1.00640 0.89592 1.18927 0.85241 0.88178 0.97189 1.42312 1.07731 1.08422 1.78604 1.19198 0.92235 0.89930 1.35529 0.90964 1.24758 0.97733 0.96172 1.02397 1.69674 1.19891 1.14359 1.54246 0.86230 0.80636 0.80392 0.78694 1.21270 1.21790 1.21240 1.75075 1.09859 1.01392 1.25872 1.78239 1.20895 1.21139 0.86933 1.21187 0.92323 0.99317 1.07411 0.92154 0.87682 0.92270 0.84125 0.82153 0.86629 0.85745 0.79469 0.94488 0.94451 0.78110 0.93526 0.83499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.84 101.05 0.99 1.10 16 2 O -0.31 -2.57 10.51 -18.92 -0.20 -2.77 16 3 C 0.17 1.56 6.74 -38.82 -0.26 1.30 16 4 C -0.26 -2.07 9.11 -39.30 -0.36 -2.42 16 5 C 0.14 1.36 11.17 -17.60 -0.20 1.16 16 6 N -0.49 -5.91 10.22 -9.55 -0.10 -6.01 16 7 C 0.15 1.59 6.18 -82.63 -0.51 1.08 16 8 C 0.17 1.76 6.84 -5.19 -0.04 1.72 16 9 N -0.29 -4.45 3.39 -62.44 -0.21 -4.66 16 10 C -0.03 -0.55 11.50 -17.05 -0.20 -0.75 16 11 C -0.01 -0.15 6.61 -82.78 -0.55 -0.70 16 12 C 0.23 5.16 6.82 -5.20 -0.04 5.13 16 13 N -0.73 -19.62 5.59 -61.08 -0.34 -19.96 16 14 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 15 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 16 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 17 N -0.93 -29.29 13.06 55.49 0.72 -28.57 16 18 Si 0.91 22.94 29.55 -169.99 -5.02 17.92 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 22 N -0.25 -5.55 12.41 33.29 0.41 -5.13 16 23 N -0.09 -1.78 12.92 60.35 0.78 -1.00 16 24 C -0.18 -1.75 9.67 -39.30 -0.38 -2.13 16 25 H 0.06 0.22 7.71 -51.93 -0.40 -0.18 16 26 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.18 7.71 -51.93 -0.40 -0.22 16 28 H 0.14 0.72 6.47 -52.48 -0.34 0.38 16 29 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.12 0.88 7.87 -51.93 -0.41 0.48 16 31 H 0.12 0.87 8.07 -51.93 -0.42 0.46 16 32 H 0.19 2.36 8.06 -52.49 -0.42 1.94 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.39 11.19 7.66 -40.82 -0.31 10.88 16 36 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 37 H 0.15 1.13 7.95 -52.48 -0.42 0.72 16 LS Contribution 329.05 15.07 4.96 4.96 Total: -1.00 -37.80 329.05 -5.13 -42.93 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -4.36 Total: 4.37 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -1.77 Total: -2.07 kcal Atomic # 7 Polarization: -66.60 SS G_CDS: 1.27 Total: -65.34 kcal Atomic # 8 Polarization: -2.57 SS G_CDS: -0.20 Total: -2.77 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -37.80 -5.13 -42.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119335141.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.195 kcal (2) G-P(sol) polarization free energy of solvation -37.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds