Wall clock time and date at job start Tue Mar 31 2020 06:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35736 * 117.00032 * 2 1 4 4 C 1.39286 * 120.84530 * 0.02562 * 3 2 1 5 5 C 1.37954 * 119.09386 * 179.97438 * 4 3 2 6 6 N 1.31972 * 120.82147 * 359.97438 * 5 4 3 7 7 C 1.31951 * 121.86509 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.58818 * 180.02562 * 7 6 5 9 9 N 1.46497 * 109.47236 * 305.00061 * 8 7 6 10 10 C 1.35313 * 125.86667 * 125.29282 * 9 8 7 11 11 C 1.35349 * 106.17218 * 180.18574 * 10 9 8 12 12 C 1.50697 * 126.75364 * 179.85517 * 11 10 9 13 13 N 1.46499 * 109.47276 * 94.71254 * 12 11 10 14 14 C 1.36935 * 119.99938 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00518 * 359.72965 * 14 13 12 16 16 C 1.38817 * 119.99990 * 179.97438 * 14 13 12 17 17 N 1.31617 * 119.99869 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99909 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47028 * 60.00888 * 18 16 14 20 20 H 1.48503 * 109.46851 * 180.02562 * 18 16 14 21 21 H 1.48492 * 109.47412 * 300.00497 * 18 16 14 22 22 N 1.33774 * 106.49914 * 359.59715 * 11 10 9 23 23 N 1.28635 * 108.88067 * 0.25663 * 22 11 10 24 24 C 1.37987 * 120.81941 * 0.27335 * 7 6 5 25 25 H 1.08990 * 109.47054 * 60.00032 * 1 2 3 26 26 H 1.09003 * 109.46952 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47046 * 299.99768 * 1 2 3 28 28 H 1.08006 * 120.45598 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.58791 * 180.02562 * 5 4 3 30 30 H 1.08997 * 109.46644 * 184.99815 * 8 7 6 31 31 H 1.09004 * 109.46850 * 65.00338 * 8 7 6 32 32 H 1.08001 * 126.91913 * 0.04070 * 10 9 8 33 33 H 1.09004 * 109.47205 * 334.71228 * 12 11 10 34 34 H 1.09005 * 109.47240 * 214.71438 * 12 11 10 35 35 H 0.96999 * 119.99984 * 0.02562 * 13 12 11 36 36 H 0.96996 * 119.99743 * 179.97438 * 17 16 14 37 37 H 1.08008 * 120.45207 * 179.70412 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3040 2.3886 0.0005 5 6 1.9675 3.5981 0.0011 6 7 3.2864 3.6458 0.0016 7 6 4.0230 2.5510 0.0021 8 6 5.5257 2.6652 0.0032 9 7 5.9535 3.4922 -1.1278 10 6 6.7336 4.5952 -1.0531 11 6 6.8741 5.0443 -2.3222 12 6 7.6536 6.2539 -2.7696 13 7 9.0008 5.8444 -3.1740 14 6 9.8957 6.7800 -3.6203 15 1 9.6070 7.8190 -3.6782 16 6 11.1725 6.3921 -4.0030 17 7 11.5227 5.1250 -3.9375 18 14 12.3930 7.6682 -4.6124 19 1 12.6285 8.6760 -3.5475 20 1 13.6749 7.0022 -4.9565 21 1 11.8457 8.3405 -5.8180 22 7 6.1894 4.2000 -3.1019 23 7 5.6557 3.2917 -2.3638 24 6 3.4345 1.3029 -0.0035 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.2244 2.3566 0.0014 29 1 1.4007 4.5174 0.0019 30 1 5.9656 1.6719 -0.0860 31 1 5.8543 3.1257 0.9349 32 1 7.1570 5.0312 -0.1603 33 1 7.7219 6.9666 -1.9477 34 1 7.1469 6.7208 -3.6142 35 1 9.2589 4.9107 -3.1258 36 1 12.4146 4.8540 -4.2053 37 1 4.0432 0.4107 -0.0079 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119335141.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:32 Heat of formation + Delta-G solvation = 91.527109 kcal Electronic energy + Delta-G solvation = -21422.135198 eV Core-core repulsion = 18009.012037 eV Total energy + Delta-G solvation = -3413.123161 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.16198 -41.69525 -39.42655 -36.92089 -35.81799 -33.66982 -32.83948 -32.44233 -31.52870 -29.14045 -27.88456 -27.48754 -24.74833 -24.62265 -23.73751 -22.63498 -21.73215 -19.44259 -19.07521 -18.42426 -17.70121 -17.39900 -16.85861 -16.75951 -16.58790 -15.85176 -15.80657 -15.65950 -15.19936 -14.97315 -14.73336 -14.49290 -14.29378 -13.89694 -13.46264 -13.19844 -12.97145 -12.71081 -12.55303 -12.48088 -12.27581 -12.10716 -11.86471 -11.75929 -11.08822 -10.92329 -10.63605 -10.25295 -10.10956 -9.95362 -8.99483 -7.90676 -5.21097 -0.14199 0.24605 0.70746 1.48352 1.51986 1.55505 1.56677 1.62239 2.09980 2.61866 2.69204 2.99478 3.40751 3.49335 3.57394 3.75777 3.84693 3.99181 4.05097 4.15584 4.24343 4.27017 4.32115 4.33734 4.34637 4.59160 4.65404 4.68917 4.75108 4.90544 4.97055 5.20193 5.22493 5.38690 5.52790 5.71762 6.14256 6.28871 6.89993 7.35506 7.58670 8.07139 8.33859 9.33198 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.050160 B = 0.002584 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.081486 B =10835.192157 C =11017.964754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.325 6.325 3 C 0.160 3.840 4 C -0.248 4.248 5 C 0.128 3.872 6 N -0.522 5.522 7 C 0.130 3.870 8 C 0.162 3.838 9 N -0.274 5.274 10 C -0.011 4.011 11 C -0.041 4.041 12 C 0.238 3.762 13 N -0.739 5.739 14 C -0.244 4.244 15 H 0.084 0.916 16 C -0.079 4.079 17 N -0.973 5.973 18 Si 0.981 3.019 19 H -0.271 1.271 20 H -0.297 1.297 21 H -0.279 1.279 22 N -0.301 5.301 23 N -0.110 5.110 24 C -0.190 4.190 25 H 0.066 0.934 26 H 0.123 0.877 27 H 0.074 0.926 28 H 0.170 0.830 29 H 0.180 0.820 30 H 0.141 0.859 31 H 0.159 0.841 32 H 0.228 0.772 33 H 0.062 0.938 34 H 0.026 0.974 35 H 0.371 0.629 36 H 0.251 0.749 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.881 -9.511 16.584 31.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.236 6.236 3 C 0.106 3.894 4 C -0.269 4.269 5 C -0.029 4.029 6 N -0.235 5.235 7 C -0.007 4.007 8 C 0.042 3.958 9 N -0.068 5.068 10 C -0.163 4.163 11 C -0.179 4.179 12 C 0.110 3.890 13 N -0.381 5.381 14 C -0.376 4.376 15 H 0.102 0.898 16 C -0.271 4.271 17 N -0.624 5.624 18 Si 0.809 3.191 19 H -0.197 1.197 20 H -0.224 1.224 21 H -0.206 1.206 22 N -0.168 5.168 23 N -0.089 5.089 24 C -0.211 4.211 25 H 0.085 0.915 26 H 0.141 0.859 27 H 0.092 0.908 28 H 0.187 0.813 29 H 0.197 0.803 30 H 0.158 0.842 31 H 0.177 0.823 32 H 0.244 0.756 33 H 0.080 0.920 34 H 0.043 0.957 35 H 0.202 0.798 36 H 0.059 0.941 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -25.146 -9.700 15.568 31.125 hybrid contribution 0.651 0.005 0.148 0.667 sum -24.495 -9.695 15.715 30.676 Atomic orbital electron populations 1.23479 0.75518 1.06192 1.02773 1.86065 1.24213 1.25777 1.87546 1.19417 0.92453 0.85457 0.92106 1.22549 1.03129 0.92342 1.08838 1.22962 0.89285 0.98654 0.91973 1.67435 1.08594 1.32393 1.15120 1.20825 0.95455 0.88519 0.95928 1.21360 0.89394 0.97958 0.87085 1.47304 1.32368 1.19747 1.07362 1.23820 0.99901 0.91063 1.01517 1.22254 1.03403 1.01004 0.91264 1.18932 0.83097 0.89622 0.97360 1.42513 1.09411 1.07436 1.78773 1.19674 0.92700 0.90786 1.34405 0.89826 1.25669 0.99855 0.98229 1.03371 1.69855 1.20069 1.16525 1.55961 0.85103 0.77616 0.77930 0.78433 1.19680 1.22351 1.20557 1.74999 1.11426 1.02670 1.27750 1.78120 1.21440 1.20918 0.88453 1.21392 0.93083 0.99454 1.07172 0.91537 0.85912 0.90789 0.81274 0.80282 0.84156 0.82341 0.75563 0.91998 0.95658 0.79803 0.94070 0.82196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.84 113.37 1.12 1.21 16 2 O -0.32 -4.88 10.51 -90.60 -0.95 -5.83 16 3 C 0.16 2.72 6.74 22.76 0.15 2.87 16 4 C -0.25 -3.55 9.11 22.45 0.20 -3.35 16 5 C 0.13 2.27 11.17 84.60 0.95 3.21 16 6 N -0.52 -12.06 10.22 -184.12 -1.88 -13.94 16 7 C 0.13 2.66 6.18 42.48 0.26 2.92 16 8 C 0.16 2.90 6.84 85.63 0.59 3.49 16 9 N -0.27 -8.01 3.39 -351.47 -1.19 -9.20 16 10 C -0.01 -0.34 11.50 83.49 0.96 0.62 16 11 C -0.04 -1.65 6.61 41.59 0.28 -1.37 16 12 C 0.24 10.51 6.82 85.63 0.58 11.09 16 13 N -0.74 -40.31 5.59 -347.17 -1.94 -42.25 16 14 C -0.24 -14.12 9.99 84.04 0.84 -13.28 16 15 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 16 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 17 N -0.97 -62.09 13.06 21.65 0.28 -61.80 16 18 Si 0.98 47.24 29.55 68.60 2.03 49.27 16 19 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 20 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 21 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 22 N -0.30 -13.39 12.41 -48.60 -0.60 -14.00 16 23 N -0.11 -4.21 12.92 37.02 0.48 -3.74 16 24 C -0.19 -3.43 9.67 22.45 0.22 -3.22 16 25 H 0.07 0.35 7.71 -2.39 -0.02 0.33 16 26 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 27 H 0.07 0.25 7.71 -2.39 -0.02 0.24 16 28 H 0.17 1.27 6.47 -2.91 -0.02 1.26 16 29 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 30 H 0.14 1.81 7.87 -2.39 -0.02 1.79 16 31 H 0.16 1.70 8.07 -2.39 -0.02 1.68 16 32 H 0.23 4.93 8.06 -2.91 -0.02 4.91 16 33 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 34 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.37 22.05 7.66 -92.71 -0.71 21.34 16 36 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 37 H 0.16 2.27 7.95 -2.91 -0.02 2.24 16 Total: -1.00 -83.38 329.05 3.22 -80.16 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: 0.40 Total: 21.39 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 6.61 Total: -0.06 kcal Atomic # 7 Polarization: -140.07 SS G_CDS: -4.86 Total: -144.92 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.95 Total: -5.83 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -83.38 3.22 -80.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119335141.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.686 kcal (2) G-P(sol) polarization free energy of solvation -83.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds